Wall clock time and date at job start Tue Mar 31 2020 23:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.78210 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24424 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.34775 * 125.64993 * 178.90064 * 5 4 2 7 7 O 1.21286 * 120.00271 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99749 * 359.97196 * 6 5 4 9 9 S 1.81001 * 109.46889 * 180.02562 * 8 6 5 10 10 C 1.76203 * 99.99862 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99657 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00093 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99881 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00022 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47323 * 59.99746 * 14 12 10 16 16 H 1.48500 * 109.46965 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46968 * 299.99607 * 14 12 10 18 18 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 19 19 C 1.54914 * 104.82992 * 24.12623 * 18 5 4 20 20 H 1.09000 * 111.00339 * 81.07133 * 19 18 5 21 21 N 1.46906 * 111.00138 * 204.91985 * 19 18 5 22 22 C 1.46904 * 110.99383 * 273.54550 * 21 19 18 23 23 C 1.50709 * 109.46565 * 180.02562 * 22 21 19 24 24 N 1.30511 * 126.34567 * 90.02447 * 23 22 21 25 25 N 1.28598 * 109.67500 * 179.97438 * 24 23 22 26 26 C 1.30524 * 109.67203 * 0.02562 * 25 24 23 27 27 N 1.35495 * 126.34380 * 269.71209 * 23 22 21 28 28 C 1.46505 * 126.97982 * 0.03959 * 27 23 22 29 29 H 1.08999 * 109.47052 * 298.21297 * 1 2 3 30 30 H 1.08993 * 109.46847 * 58.21272 * 1 2 3 31 31 H 1.09005 * 109.46970 * 178.21386 * 1 2 3 32 32 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 33 33 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 34 34 H 1.08998 * 109.47418 * 300.00009 * 8 6 5 35 35 H 1.08995 * 109.46873 * 60.00330 * 8 6 5 36 36 H 0.96993 * 119.99756 * 179.97438 * 13 12 10 37 37 H 1.08999 * 110.36956 * 142.96999 * 18 5 4 38 38 H 1.09001 * 110.36709 * 265.18192 * 18 5 4 39 39 H 1.00894 * 111.00184 * 37.50009 * 21 19 18 40 40 H 1.08990 * 109.47445 * 299.99831 * 22 21 19 41 41 H 1.09000 * 109.47295 * 60.00909 * 22 21 19 42 42 H 1.07994 * 126.35164 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.47221 * 90.00201 * 28 27 23 44 44 H 1.09003 * 109.46643 * 210.00146 * 28 27 23 45 45 H 1.08995 * 109.47117 * 329.99791 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8897 -3.1457 1.4941 7 8 3.0954 -4.2354 1.0028 8 6 3.2103 -2.9012 2.9462 9 16 3.8832 -4.4136 3.6784 10 6 4.1598 -3.8583 5.3276 11 1 3.9178 -2.8425 5.6030 12 6 4.6897 -4.7260 6.2724 13 7 4.9851 -5.9641 5.9365 14 14 4.9836 -4.1371 8.0206 15 1 3.6969 -3.6985 8.6181 16 1 5.5520 -5.2465 8.8277 17 1 5.9362 -2.9980 8.0056 18 6 2.0157 -2.2547 -0.6849 19 6 2.0792 -0.8000 -1.2138 20 1 3.1058 -0.5103 -1.4381 21 7 1.2172 -0.6299 -2.3912 22 6 1.9309 -0.9924 -3.6229 23 6 1.0171 -0.8048 -4.8066 24 7 0.8809 0.2836 -5.5138 25 7 0.0175 0.0885 -6.4467 26 6 -0.4366 -1.1332 -6.3767 27 7 0.1891 -1.7368 -5.3374 28 6 0.0048 -3.1158 -4.8783 29 1 -0.3633 0.4858 0.9056 30 1 -0.3633 0.5413 -0.8735 31 1 -0.3633 -1.0272 -0.0320 32 1 1.3264 -0.8256 1.9977 33 1 2.9854 -0.3193 1.5792 34 1 3.9460 -2.1009 3.0261 35 1 2.3019 -2.6139 3.4755 36 1 5.3557 -6.5703 6.5967 37 1 2.7337 -2.8822 -1.2130 38 1 1.0085 -2.6566 -0.7952 39 1 0.3659 -1.1631 -2.2962 40 1 2.8072 -0.3543 -3.7363 41 1 2.2450 -2.0347 -3.5675 42 1 -1.1716 -1.5812 -7.0289 43 1 -0.7925 -3.1480 -4.1359 44 1 -0.2616 -3.7481 -5.7253 45 1 0.9314 -3.4772 -4.4324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733837268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:02 Heat of formation + Delta-G solvation = 55.860788 kcal Electronic energy + Delta-G solvation = -26544.004092 eV Core-core repulsion = 22724.562234 eV Total energy + Delta-G solvation = -3819.441858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.49413 -40.27993 -38.09811 -35.91299 -35.18296 -32.66876 -32.45982 -31.25341 -29.97021 -28.29612 -27.82095 -26.73192 -25.73429 -25.39771 -23.03907 -22.75491 -21.29604 -20.09457 -19.45323 -17.91776 -17.56040 -17.03704 -16.78876 -16.34626 -16.19685 -15.54571 -14.99256 -14.88435 -14.82508 -14.62847 -14.40940 -13.98739 -13.92409 -13.67913 -13.34433 -13.12781 -12.99877 -12.83114 -12.72347 -12.53733 -12.25755 -11.91173 -11.86630 -11.43701 -11.18762 -11.07723 -11.06563 -10.95822 -10.80205 -10.71626 -10.64031 -9.87063 -9.70769 -9.51847 -9.09173 -9.00770 -8.58976 -8.28957 -6.54838 -6.25001 -3.96222 1.33340 1.99414 2.49175 2.80760 2.96785 3.21172 3.22373 3.26566 3.48517 3.64245 3.87872 4.03321 4.10894 4.16865 4.18906 4.30082 4.43417 4.46272 4.62264 4.74316 4.81715 4.93078 4.96088 4.99394 5.10166 5.18764 5.25193 5.36973 5.39489 5.43323 5.48809 5.58259 5.60451 5.71315 5.73642 5.83843 5.88749 6.06902 6.09096 6.24229 6.33867 6.43404 6.70353 7.55271 7.57129 8.31704 8.37201 8.45844 9.20222 10.82379 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.001970 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.450928 B =14210.076423 C =14834.015071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.096 0.904 4 C 0.102 3.898 5 N -0.622 5.622 6 C 0.549 3.451 7 O -0.517 6.517 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.081 3.919 19 C 0.079 3.921 20 H 0.102 0.898 21 N -0.661 5.661 22 C 0.144 3.856 23 C 0.177 3.823 24 N -0.274 5.274 25 N -0.298 5.298 26 C 0.150 3.850 27 N -0.476 5.476 28 C 0.067 3.933 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.344 0.656 40 H 0.112 0.888 41 H 0.054 0.946 42 H 0.218 0.782 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 9.730 -20.541 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.114 0.886 4 C -0.021 4.021 5 N -0.359 5.359 6 C 0.338 3.662 7 O -0.391 6.391 8 C -0.297 4.297 9 S 0.165 5.835 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.045 4.045 19 C -0.032 4.032 20 H 0.120 0.880 21 N -0.293 5.293 22 C 0.013 3.987 23 C -0.090 4.090 24 N -0.115 5.115 25 N -0.138 5.138 26 C -0.138 4.138 27 N -0.168 5.168 28 C -0.076 4.076 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.163 0.837 40 H 0.130 0.870 41 H 0.072 0.928 42 H 0.235 0.765 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.911 9.928 -21.712 26.249 hybrid contribution -0.411 -0.841 2.174 2.367 sum -11.322 9.087 -19.538 24.341 Atomic orbital electron populations 1.21719 0.93864 1.01795 1.02486 1.22231 0.96886 0.99410 0.92288 0.88619 1.22183 1.00733 0.82108 0.97108 1.48344 1.65277 1.12088 1.10238 1.20074 0.75655 0.82749 0.87724 1.90705 1.51681 1.23330 1.73418 1.23503 1.04687 1.07711 0.93793 1.85379 1.80991 1.08900 1.08206 1.22811 1.49595 1.00643 0.95323 0.90943 1.24996 0.94719 0.94555 0.99302 1.70006 1.40569 1.04649 1.35069 0.86215 0.78700 0.78362 0.82187 1.19916 1.20795 1.19903 1.22864 1.00497 0.97836 0.83263 1.22900 0.97565 0.93261 0.89457 0.87971 1.60491 1.07345 1.61298 1.00120 1.20289 0.94072 1.00690 0.83649 1.24673 0.97648 0.86473 1.00232 1.74293 1.13562 1.20507 1.03166 1.74311 1.08903 1.13632 1.16906 1.26478 1.01842 0.92061 0.93394 1.46270 1.32148 1.13203 1.25142 1.22195 1.04536 0.78515 1.02334 0.92336 0.91149 0.93093 0.90961 0.90995 0.89209 0.89267 0.92108 0.90596 0.92038 0.83709 0.86991 0.92776 0.76528 0.89610 0.88591 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.11 37.16 0.30 -0.71 16 2 C -0.09 -0.67 3.58 -88.65 -0.32 -0.99 16 3 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.10 1.02 6.06 -3.07 -0.02 1.00 16 5 N -0.62 -8.21 3.33 -170.51 -0.57 -8.78 16 6 C 0.55 10.14 7.87 -10.98 -0.09 10.06 16 7 O -0.52 -11.51 16.12 5.55 0.09 -11.42 16 8 C -0.15 -2.92 5.35 36.01 0.19 -2.73 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 14 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 C 0.08 0.81 6.17 -2.53 -0.02 0.80 16 19 C 0.08 0.59 3.12 -65.42 -0.20 0.39 16 20 H 0.10 0.76 7.92 -51.93 -0.41 0.35 16 21 N -0.66 -4.44 5.43 -105.57 -0.57 -5.02 16 22 C 0.14 0.95 5.91 -4.97 -0.03 0.92 16 23 C 0.18 1.53 7.54 -154.99 -1.17 0.36 16 24 N -0.27 -3.35 12.21 32.80 0.40 -2.95 16 25 N -0.30 -3.45 12.21 29.69 0.36 -3.09 16 26 C 0.15 1.07 12.74 -89.94 -1.15 -0.08 16 27 N -0.48 -2.94 3.15 -122.69 -0.39 -3.33 16 28 C 0.07 0.15 11.04 59.85 0.66 0.81 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.51 7.64 -51.93 -0.40 0.12 16 31 H 0.05 0.39 7.46 -51.93 -0.39 0.00 16 32 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 38 H 0.06 0.58 7.40 -51.93 -0.38 0.19 16 39 H 0.34 2.12 7.64 -39.30 -0.30 1.82 16 40 H 0.11 0.76 8.09 -51.93 -0.42 0.34 16 41 H 0.05 0.27 7.21 -51.93 -0.37 -0.10 16 42 H 0.22 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 45 H 0.09 0.18 7.19 -51.93 -0.37 -0.19 16 LS Contribution 387.20 15.07 5.84 5.84 Total: -1.00 -37.96 387.20 -9.77 -47.74 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.80 Total: -3.14 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.63 Total: -2.97 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.03 Total: -48.31 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.96 -9.77 -47.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733837268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.596 kcal (2) G-P(sol) polarization free energy of solvation -37.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds