Wall clock time and date at job start Tue Mar 31 2020 23:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.78210 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24424 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.34775 * 125.64993 * 178.90064 * 5 4 2 7 7 O 1.21286 * 120.00271 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99749 * 359.97196 * 6 5 4 9 9 S 1.81001 * 109.46889 * 180.02562 * 8 6 5 10 10 C 1.76203 * 99.99862 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99657 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00093 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99881 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00022 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47323 * 59.99746 * 14 12 10 16 16 H 1.48500 * 109.46965 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46968 * 299.99607 * 14 12 10 18 18 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 19 19 C 1.54914 * 104.82992 * 24.12623 * 18 5 4 20 20 H 1.09000 * 111.00339 * 81.07133 * 19 18 5 21 21 N 1.46906 * 111.00138 * 204.91985 * 19 18 5 22 22 C 1.46904 * 110.99383 * 273.54550 * 21 19 18 23 23 C 1.50709 * 109.46565 * 180.02562 * 22 21 19 24 24 N 1.30511 * 126.34567 * 90.02447 * 23 22 21 25 25 N 1.28598 * 109.67500 * 179.97438 * 24 23 22 26 26 C 1.30524 * 109.67203 * 0.02562 * 25 24 23 27 27 N 1.35495 * 126.34380 * 269.71209 * 23 22 21 28 28 C 1.46505 * 126.97982 * 0.03959 * 27 23 22 29 29 H 1.08999 * 109.47052 * 298.21297 * 1 2 3 30 30 H 1.08993 * 109.46847 * 58.21272 * 1 2 3 31 31 H 1.09005 * 109.46970 * 178.21386 * 1 2 3 32 32 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 33 33 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 34 34 H 1.08998 * 109.47418 * 300.00009 * 8 6 5 35 35 H 1.08995 * 109.46873 * 60.00330 * 8 6 5 36 36 H 0.96993 * 119.99756 * 179.97438 * 13 12 10 37 37 H 1.08999 * 110.36956 * 142.96999 * 18 5 4 38 38 H 1.09001 * 110.36709 * 265.18192 * 18 5 4 39 39 H 1.00894 * 111.00184 * 37.50009 * 21 19 18 40 40 H 1.08990 * 109.47445 * 299.99831 * 22 21 19 41 41 H 1.09000 * 109.47295 * 60.00909 * 22 21 19 42 42 H 1.07994 * 126.35164 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.47221 * 90.00201 * 28 27 23 44 44 H 1.09003 * 109.46643 * 210.00146 * 28 27 23 45 45 H 1.08995 * 109.47117 * 329.99791 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8897 -3.1457 1.4941 7 8 3.0954 -4.2354 1.0028 8 6 3.2103 -2.9012 2.9462 9 16 3.8832 -4.4136 3.6784 10 6 4.1598 -3.8583 5.3276 11 1 3.9178 -2.8425 5.6030 12 6 4.6897 -4.7260 6.2724 13 7 4.9851 -5.9641 5.9365 14 14 4.9836 -4.1371 8.0206 15 1 3.6969 -3.6985 8.6181 16 1 5.5520 -5.2465 8.8277 17 1 5.9362 -2.9980 8.0056 18 6 2.0157 -2.2547 -0.6849 19 6 2.0792 -0.8000 -1.2138 20 1 3.1058 -0.5103 -1.4381 21 7 1.2172 -0.6299 -2.3912 22 6 1.9309 -0.9924 -3.6229 23 6 1.0171 -0.8048 -4.8066 24 7 0.8809 0.2836 -5.5138 25 7 0.0175 0.0885 -6.4467 26 6 -0.4366 -1.1332 -6.3767 27 7 0.1891 -1.7368 -5.3374 28 6 0.0048 -3.1158 -4.8783 29 1 -0.3633 0.4858 0.9056 30 1 -0.3633 0.5413 -0.8735 31 1 -0.3633 -1.0272 -0.0320 32 1 1.3264 -0.8256 1.9977 33 1 2.9854 -0.3193 1.5792 34 1 3.9460 -2.1009 3.0261 35 1 2.3019 -2.6139 3.4755 36 1 5.3557 -6.5703 6.5967 37 1 2.7337 -2.8822 -1.2130 38 1 1.0085 -2.6566 -0.7952 39 1 0.3659 -1.1631 -2.2962 40 1 2.8072 -0.3543 -3.7363 41 1 2.2450 -2.0347 -3.5675 42 1 -1.1716 -1.5812 -7.0289 43 1 -0.7925 -3.1480 -4.1359 44 1 -0.2616 -3.7481 -5.7253 45 1 0.9314 -3.4772 -4.4324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733837268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:01 Heat of formation + Delta-G solvation = 30.009041 kcal Electronic energy + Delta-G solvation = -26545.125108 eV Core-core repulsion = 22724.562234 eV Total energy + Delta-G solvation = -3820.562874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.07935 -41.29837 -39.25812 -36.61817 -35.76360 -34.59234 -33.57794 -31.93382 -31.24214 -28.99578 -28.40437 -27.68522 -27.47014 -26.30271 -23.89167 -23.32586 -21.84412 -20.86700 -20.69773 -19.59503 -18.28434 -17.97435 -17.63910 -17.16267 -17.08149 -16.88485 -16.33454 -16.03203 -15.86251 -15.65485 -15.27977 -15.12937 -14.57561 -14.35256 -14.26324 -14.08482 -14.02493 -13.70577 -13.41401 -13.38411 -13.26561 -13.17908 -13.03821 -12.87112 -12.63413 -12.54184 -12.12901 -11.81967 -11.75719 -11.60574 -11.33172 -11.13398 -11.10869 -10.98816 -10.35841 -10.29995 -9.78456 -9.51929 -8.68610 -8.35294 -6.13846 0.80275 1.23081 1.43744 1.44293 1.53606 1.54323 1.58516 1.85002 2.06204 2.26908 2.96634 2.98816 3.21520 3.33262 3.45719 3.57881 3.73984 3.84828 3.88666 3.94511 4.02878 4.13552 4.19399 4.26243 4.31087 4.43916 4.44693 4.56339 4.66024 4.67133 4.69630 4.71978 4.77355 4.92567 4.93356 5.09065 5.16739 5.25837 5.33144 5.40986 5.48677 5.74928 5.95401 6.17330 6.18933 6.34393 7.05883 7.08417 7.74856 8.73607 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.001970 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.450928 B =14210.076423 C =14834.015071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 H 0.111 0.889 4 C 0.094 3.906 5 N -0.611 5.611 6 C 0.548 3.452 7 O -0.566 6.566 8 C -0.121 4.121 9 S -0.149 6.149 10 C -0.547 4.547 11 H 0.083 0.917 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.262 1.262 18 C 0.078 3.922 19 C 0.094 3.906 20 H 0.107 0.893 21 N -0.658 5.658 22 C 0.147 3.853 23 C 0.176 3.824 24 N -0.325 5.325 25 N -0.352 5.352 26 C 0.163 3.837 27 N -0.471 5.471 28 C 0.060 3.940 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.349 0.651 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.258 0.742 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 11.097 -20.329 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.129 0.871 4 C -0.029 4.029 5 N -0.346 5.346 6 C 0.336 3.664 7 O -0.445 6.445 8 C -0.272 4.272 9 S 0.078 5.922 10 C -0.694 4.694 11 H 0.101 0.899 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.047 4.047 19 C -0.017 4.017 20 H 0.125 0.875 21 N -0.290 5.290 22 C 0.016 3.984 23 C -0.093 4.093 24 N -0.165 5.165 25 N -0.191 5.191 26 C -0.126 4.126 27 N -0.162 5.162 28 C -0.081 4.081 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.169 0.831 40 H 0.126 0.874 41 H 0.090 0.910 42 H 0.274 0.726 43 H 0.116 0.884 44 H 0.138 0.862 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.078 11.344 -21.529 27.168 hybrid contribution -0.157 -1.237 1.972 2.333 sum -12.235 10.107 -19.557 25.186 Atomic orbital electron populations 1.21675 0.93360 1.01576 1.02761 1.22219 0.97148 0.99633 0.90873 0.87069 1.22492 1.01511 0.80401 0.98469 1.48234 1.62880 1.12189 1.11291 1.19734 0.76201 0.83119 0.87371 1.90684 1.54268 1.25459 1.74047 1.23305 1.05188 1.03865 0.94839 1.85537 1.82209 1.14865 1.09607 1.23154 1.49599 1.01155 0.95525 0.89934 1.26127 0.94138 0.94545 1.04311 1.70173 1.41606 1.06157 1.36753 0.85010 0.79131 0.78044 0.75873 1.18629 1.20403 1.18651 1.23116 1.00695 0.99711 0.81135 1.22769 0.98064 0.91192 0.89659 0.87505 1.60471 1.07364 1.61393 0.99764 1.20314 0.93509 1.01649 0.82899 1.24880 0.97858 0.86370 1.00227 1.74171 1.15061 1.22747 1.04529 1.74192 1.10431 1.16282 1.18154 1.27215 1.01163 0.90996 0.93200 1.46470 1.31085 1.14153 1.24470 1.22524 1.05258 0.76623 1.03739 0.91900 0.91068 0.93526 0.90404 0.90141 0.87591 0.87690 0.91975 0.91565 0.90924 0.83117 0.87367 0.90981 0.72609 0.88415 0.86224 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.11 71.98 0.58 -0.99 16 2 C -0.08 -0.97 3.58 -9.52 -0.03 -1.00 16 3 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.09 1.62 6.06 86.73 0.53 2.14 16 5 N -0.61 -15.18 3.33 -811.77 -2.70 -17.88 16 6 C 0.55 20.04 7.87 87.66 0.69 20.73 16 7 O -0.57 -25.73 16.12 -3.05 -0.05 -25.78 16 8 C -0.12 -4.77 5.35 71.24 0.38 -4.39 16 9 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 10 C -0.55 -30.89 9.50 67.95 0.65 -30.24 16 11 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 12 C 0.01 0.77 5.49 84.86 0.47 1.24 16 13 N -0.91 -55.40 13.22 21.65 0.29 -55.12 16 14 Si 1.00 43.03 29.55 68.60 2.03 45.05 16 15 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 18 C 0.08 1.43 6.17 86.86 0.54 1.97 16 19 C 0.09 1.18 3.12 46.40 0.14 1.33 16 20 H 0.11 1.32 7.92 -2.39 -0.02 1.30 16 21 N -0.66 -7.44 5.43 -487.92 -2.65 -10.09 16 22 C 0.15 1.71 5.91 85.56 0.51 2.21 16 23 C 0.18 2.86 7.54 137.98 1.04 3.90 16 24 N -0.32 -7.93 12.21 -50.15 -0.61 -8.54 16 25 N -0.35 -8.09 12.21 -59.99 -0.73 -8.82 16 26 C 0.16 2.06 12.74 180.11 2.30 4.35 16 27 N -0.47 -4.93 3.15 -542.07 -1.71 -6.64 16 28 C 0.06 0.11 11.04 127.77 1.41 1.52 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.85 7.64 -2.39 -0.02 0.83 16 31 H 0.05 0.59 7.46 -2.38 -0.02 0.57 16 32 H 0.08 1.32 7.84 -2.39 -0.02 1.30 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 35 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 37 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 38 H 0.07 1.21 7.40 -2.39 -0.02 1.19 16 39 H 0.35 3.46 7.64 -89.70 -0.69 2.77 16 40 H 0.11 1.36 8.09 -2.39 -0.02 1.34 16 41 H 0.07 0.58 7.21 -2.39 -0.02 0.57 16 42 H 0.26 0.63 8.06 -2.91 -0.02 0.61 16 43 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.10 0.13 7.19 -2.39 -0.02 0.11 16 Total: -1.00 -86.56 387.20 2.21 -84.35 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.32 Total: 10.07 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 9.19 Total: 2.76 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -8.12 Total: -107.08 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -86.56 2.21 -84.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733837268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.363 kcal (2) G-P(sol) polarization free energy of solvation -86.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds