Wall clock time and date at job start Tue Mar 31 2020 23:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46955 * 2 1 4 4 C 1.35624 * 125.67563 * 260.75479 * 3 2 1 5 5 C 1.35522 * 108.85244 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 126.07571 * 179.73934 * 5 4 3 7 7 C 1.39886 * 107.85020 * 0.02562 * 5 4 3 8 8 C 1.37630 * 125.67548 * 80.76027 * 3 2 1 9 9 C 1.46669 * 126.22406 * 359.97438 * 8 3 2 10 10 O 1.21697 * 119.99925 * 6.55698 * 9 8 3 11 11 N 1.34783 * 120.00147 * 186.55416 * 9 8 3 12 12 C 1.47421 * 125.64689 * 2.97815 * 11 9 8 13 13 C 1.55126 * 104.72047 * 155.81524 * 12 11 9 14 14 C 1.55150 * 101.48745 * 37.29491 * 13 12 11 15 15 C 1.47023 * 125.64746 * 183.28265 * 11 9 8 16 16 H 1.09000 * 109.88078 * 300.44108 * 15 11 9 17 17 C 1.53006 * 109.88049 * 61.61003 * 15 11 9 18 18 N 1.46501 * 109.47020 * 297.56980 * 17 15 11 19 19 C 1.46501 * 119.99999 * 282.93117 * 18 17 15 20 20 C 1.36932 * 119.99632 * 102.93283 * 18 17 15 21 21 H 1.08005 * 120.00168 * 316.33274 * 20 18 17 22 22 C 1.38812 * 120.00263 * 136.33907 * 20 18 17 23 23 N 1.31626 * 119.99355 * 355.59256 * 22 20 18 24 24 Si 1.86801 * 120.00609 * 175.59100 * 22 20 18 25 25 H 1.48500 * 109.46813 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46909 * 119.99705 * 24 22 20 27 27 H 1.48499 * 109.46979 * 240.00027 * 24 22 20 28 28 H 1.09000 * 109.47176 * 185.01654 * 1 2 3 29 29 H 1.08996 * 109.46995 * 305.01624 * 1 2 3 30 30 H 1.08999 * 109.47101 * 65.01675 * 1 2 3 31 31 H 1.08999 * 109.47074 * 240.00064 * 2 1 3 32 32 H 1.08993 * 109.47202 * 120.00105 * 2 1 3 33 33 H 1.08001 * 125.57789 * 359.97438 * 4 3 2 34 34 H 1.07997 * 126.45706 * 180.02562 * 7 5 4 35 35 H 1.08994 * 110.37066 * 274.74749 * 12 11 9 36 36 H 1.09008 * 110.36503 * 37.07047 * 12 11 9 37 37 H 1.09006 * 111.19536 * 279.19023 * 13 12 11 38 38 H 1.08998 * 110.93606 * 155.29301 * 13 12 11 39 39 H 1.09003 * 110.72169 * 205.97130 * 14 13 12 40 40 H 1.09003 * 110.72147 * 82.69767 * 14 13 12 41 41 H 1.08995 * 109.46840 * 57.57346 * 17 15 11 42 42 H 1.09000 * 109.46724 * 177.57058 * 17 15 11 43 43 H 1.08998 * 109.46751 * 93.34424 * 19 18 17 44 44 H 1.08997 * 109.46916 * 213.34045 * 19 18 17 45 45 H 1.08995 * 109.47032 * 333.34389 * 19 18 17 46 46 H 0.97002 * 119.99591 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4488 2.0680 -1.0874 5 6 2.8223 3.3118 -0.7002 6 17 3.4485 4.5590 -1.7327 7 6 2.6197 3.4101 0.6804 8 6 2.1165 2.1978 1.1035 9 6 1.7531 1.8430 2.4794 10 8 1.4316 0.7005 2.7485 11 7 1.7753 2.7822 3.4459 12 6 2.0836 4.2103 3.2492 13 6 1.3927 4.9300 4.4371 14 6 1.6176 3.9134 5.5873 15 6 1.5021 2.5509 4.8719 16 1 0.4959 2.1509 4.9964 17 6 2.5290 1.5728 5.4464 18 7 2.4078 0.2815 4.7651 19 6 1.3128 -0.6287 5.1099 20 6 3.3180 -0.0746 3.8061 21 1 3.6311 0.6457 3.0647 22 6 3.8383 -1.3614 3.7867 23 7 3.5238 -2.2128 4.7400 24 14 4.9847 -1.8848 2.4078 25 1 5.1781 -0.7515 1.4679 26 1 6.2959 -2.2841 2.9790 27 1 4.3907 -3.0349 1.6801 28 1 -0.3633 -1.0237 0.0899 29 1 -0.3633 0.5897 0.8416 30 1 -0.3633 0.4340 -0.9315 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.4884 1.6858 -2.0968 34 1 2.8184 4.2732 1.2984 35 1 3.1609 4.3734 3.2785 36 1 1.6717 4.5605 2.3026 37 1 0.3294 5.0746 4.2457 38 1 1.8811 5.8800 4.6541 39 1 0.8446 4.0157 6.3490 40 1 2.6089 4.0373 6.0233 41 1 3.5327 1.9702 5.2962 42 1 2.3467 1.4396 6.5128 43 1 0.4735 -0.4591 4.4355 44 1 1.6535 -1.6596 5.0139 45 1 0.9970 -0.4445 6.1367 46 1 3.8876 -3.1119 4.7266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755199708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:42 Heat of formation + Delta-G solvation = 72.074229 kcal Electronic energy + Delta-G solvation = -29839.846368 eV Core-core repulsion = 25986.771121 eV Total energy + Delta-G solvation = -3853.075248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.25693 -39.24975 -36.65842 -36.19451 -34.98762 -33.84866 -31.62751 -31.15002 -29.44892 -28.88598 -28.45514 -25.71993 -25.12580 -23.70440 -23.05670 -21.58558 -20.97032 -20.48301 -19.56177 -18.46777 -16.90113 -16.75495 -15.94061 -15.61493 -15.14226 -14.75481 -14.68848 -14.13848 -13.92569 -13.64256 -13.52938 -13.17610 -13.01876 -12.90101 -12.81298 -12.51334 -12.39645 -11.99576 -11.95491 -11.84557 -11.57336 -11.28731 -11.17354 -10.99566 -10.88753 -10.82381 -10.66812 -10.57089 -10.46145 -10.31955 -9.94657 -9.77903 -9.72612 -8.87252 -8.46354 -8.41777 -7.91812 -7.79747 -6.11433 -5.45497 -3.19786 1.89624 2.30645 2.71403 3.06722 3.36287 3.45535 3.47555 3.79100 4.11936 4.56459 4.80996 4.81912 4.93183 5.03932 5.13874 5.25847 5.30715 5.40025 5.54382 5.56084 5.60243 5.64814 5.75529 5.80746 5.87580 5.89039 6.00402 6.06518 6.15338 6.18897 6.23029 6.28479 6.31956 6.40055 6.61328 6.70752 6.97043 7.04420 7.08304 7.16459 7.35474 7.56056 7.88786 8.10871 8.30463 8.80132 9.14196 9.44056 10.02360 10.64643 11.41773 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.006069 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.003068 B = 4612.153027 C = 6238.236020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 N -0.396 5.396 4 C 0.013 3.987 5 C -0.122 4.122 6 Cl -0.065 7.065 7 C -0.168 4.168 8 C 0.005 3.995 9 C 0.567 3.433 10 O -0.443 6.443 11 N -0.601 5.601 12 C 0.091 3.909 13 C -0.133 4.133 14 C -0.127 4.127 15 C 0.122 3.878 16 H 0.063 0.937 17 C 0.140 3.860 18 N -0.572 5.572 19 C 0.128 3.872 20 C -0.192 4.192 21 H 0.047 0.953 22 C 0.003 3.997 23 N -0.898 5.898 24 Si 0.886 3.114 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.033 0.967 43 H -0.006 1.006 44 H 0.090 0.910 45 H -0.004 1.004 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 12.863 -7.151 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.027 4.027 3 N -0.069 5.069 4 C -0.123 4.123 5 C -0.155 4.155 6 Cl -0.037 7.037 7 C -0.193 4.193 8 C -0.111 4.111 9 C 0.353 3.647 10 O -0.313 6.313 11 N -0.339 5.339 12 C -0.032 4.032 13 C -0.171 4.171 14 C -0.166 4.166 15 C 0.016 3.984 16 H 0.081 0.919 17 C 0.011 3.989 18 N -0.292 5.292 19 C -0.017 4.017 20 C -0.323 4.323 21 H 0.064 0.936 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.717 3.283 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.139 0.861 33 H 0.186 0.814 34 H 0.176 0.824 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.012 0.988 44 H 0.107 0.893 45 H 0.015 0.985 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.683 11.620 -7.116 14.763 hybrid contribution 0.869 -0.115 -1.044 1.363 sum -4.814 11.504 -8.160 14.904 Atomic orbital electron populations 1.22006 0.93971 1.03250 1.02144 1.22170 0.95921 0.78892 1.05724 1.43994 1.45561 1.11702 1.05639 1.21535 1.06207 0.91993 0.92550 1.19858 1.12446 0.91167 0.91993 1.98287 1.86265 1.52167 1.66968 1.21693 1.06340 0.98037 0.93218 1.20405 1.10415 0.90815 0.89447 1.16140 0.82121 0.84665 0.81738 1.91038 1.42805 1.16897 1.80520 1.47735 1.71798 1.07066 1.07322 1.22670 0.99453 0.82291 0.98816 1.22790 1.00880 0.98068 0.95338 1.22662 1.02403 0.94209 0.97338 1.22444 1.00856 0.95281 0.79782 0.91930 1.21200 0.95877 0.87797 0.94020 1.43387 1.28540 1.14509 1.42796 1.21141 0.88867 0.99055 0.92621 1.18796 1.13724 0.95792 1.03997 0.93555 1.25340 0.98526 0.98556 0.97072 1.69753 1.46120 1.05636 1.32853 0.86454 0.81352 0.78215 0.82322 1.20407 1.21766 1.21805 0.90672 0.91351 0.92977 0.89723 0.86147 0.81376 0.82354 0.91869 0.90217 0.91079 0.90524 0.90827 0.90678 0.93014 0.94854 0.98815 0.89264 0.98516 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 10.14 37.16 0.38 -1.78 16 2 C 0.09 1.46 6.11 -4.04 -0.02 1.44 16 3 N -0.40 -6.56 2.77 -112.83 -0.31 -6.87 16 4 C 0.01 0.19 11.34 -16.85 -0.19 0.00 16 5 C -0.12 -1.80 6.66 -39.94 -0.27 -2.07 16 6 Cl -0.07 -0.84 29.30 -51.86 -1.52 -2.36 16 7 C -0.17 -2.64 9.15 -39.09 -0.36 -3.00 16 8 C 0.00 0.08 6.83 -81.98 -0.56 -0.47 16 9 C 0.57 11.29 5.60 -12.85 -0.07 11.22 16 10 O -0.44 -10.16 8.03 5.19 0.04 -10.12 16 11 N -0.60 -10.48 3.06 -164.41 -0.50 -10.99 16 12 C 0.09 1.20 5.15 -2.41 -0.01 1.19 16 13 C -0.13 -1.42 7.10 -24.47 -0.17 -1.60 16 14 C -0.13 -1.59 6.47 -24.90 -0.16 -1.75 16 15 C 0.12 2.10 3.19 -66.95 -0.21 1.89 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.14 2.92 5.23 -4.04 -0.02 2.90 16 18 N -0.57 -14.41 1.59 -181.12 -0.29 -14.70 16 19 C 0.13 3.26 9.68 59.85 0.58 3.84 16 20 C -0.19 -5.25 6.41 -15.06 -0.10 -5.35 16 21 H 0.05 1.32 6.10 -52.48 -0.32 1.00 16 22 C 0.00 0.07 5.30 -17.43 -0.09 -0.02 16 23 N -0.90 -26.56 10.91 55.49 0.61 -25.95 16 24 Si 0.89 22.34 29.56 -169.99 -5.02 17.32 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.10 7.74 -51.93 -0.40 0.69 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 32 H 0.12 2.38 6.73 -51.93 -0.35 2.03 16 33 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.16 2.19 4.71 -52.49 -0.25 1.94 16 35 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 36 H 0.08 0.98 5.62 -51.92 -0.29 0.69 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 41 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 42 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 43 H -0.01 -0.16 6.96 -51.93 -0.36 -0.52 16 44 H 0.09 2.56 5.27 -51.93 -0.27 2.29 16 45 H 0.00 -0.09 8.00 -51.93 -0.42 -0.51 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -31.75 367.13 -9.58 -41.33 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.82 Total: 0.35 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.29 Total: 6.44 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.50 Total: -58.51 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.04 Total: -10.12 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.52 Total: -2.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.75 -9.58 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755199708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.408 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds