Wall clock time and date at job start Tue Mar 31 2020 23:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46955 * 2 1 4 4 C 1.35624 * 125.67563 * 260.75479 * 3 2 1 5 5 C 1.35522 * 108.85244 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 126.07571 * 179.73934 * 5 4 3 7 7 C 1.39886 * 107.85020 * 0.02562 * 5 4 3 8 8 C 1.37630 * 125.67548 * 80.76027 * 3 2 1 9 9 C 1.46669 * 126.22406 * 359.97438 * 8 3 2 10 10 O 1.21697 * 119.99925 * 6.55698 * 9 8 3 11 11 N 1.34783 * 120.00147 * 186.55416 * 9 8 3 12 12 C 1.47421 * 125.64689 * 2.97815 * 11 9 8 13 13 C 1.55126 * 104.72047 * 155.81524 * 12 11 9 14 14 C 1.55150 * 101.48745 * 37.29491 * 13 12 11 15 15 C 1.47023 * 125.64746 * 183.28265 * 11 9 8 16 16 H 1.09000 * 109.88078 * 300.44108 * 15 11 9 17 17 C 1.53006 * 109.88049 * 61.61003 * 15 11 9 18 18 N 1.46501 * 109.47020 * 297.56980 * 17 15 11 19 19 C 1.46501 * 119.99999 * 282.93117 * 18 17 15 20 20 C 1.36932 * 119.99632 * 102.93283 * 18 17 15 21 21 H 1.08005 * 120.00168 * 316.33274 * 20 18 17 22 22 C 1.38812 * 120.00263 * 136.33907 * 20 18 17 23 23 N 1.31626 * 119.99355 * 355.59256 * 22 20 18 24 24 Si 1.86801 * 120.00609 * 175.59100 * 22 20 18 25 25 H 1.48500 * 109.46813 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46909 * 119.99705 * 24 22 20 27 27 H 1.48499 * 109.46979 * 240.00027 * 24 22 20 28 28 H 1.09000 * 109.47176 * 185.01654 * 1 2 3 29 29 H 1.08996 * 109.46995 * 305.01624 * 1 2 3 30 30 H 1.08999 * 109.47101 * 65.01675 * 1 2 3 31 31 H 1.08999 * 109.47074 * 240.00064 * 2 1 3 32 32 H 1.08993 * 109.47202 * 120.00105 * 2 1 3 33 33 H 1.08001 * 125.57789 * 359.97438 * 4 3 2 34 34 H 1.07997 * 126.45706 * 180.02562 * 7 5 4 35 35 H 1.08994 * 110.37066 * 274.74749 * 12 11 9 36 36 H 1.09008 * 110.36503 * 37.07047 * 12 11 9 37 37 H 1.09006 * 111.19536 * 279.19023 * 13 12 11 38 38 H 1.08998 * 110.93606 * 155.29301 * 13 12 11 39 39 H 1.09003 * 110.72169 * 205.97130 * 14 13 12 40 40 H 1.09003 * 110.72147 * 82.69767 * 14 13 12 41 41 H 1.08995 * 109.46840 * 57.57346 * 17 15 11 42 42 H 1.09000 * 109.46724 * 177.57058 * 17 15 11 43 43 H 1.08998 * 109.46751 * 93.34424 * 19 18 17 44 44 H 1.08997 * 109.46916 * 213.34045 * 19 18 17 45 45 H 1.08995 * 109.47032 * 333.34389 * 19 18 17 46 46 H 0.97002 * 119.99591 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4488 2.0680 -1.0874 5 6 2.8223 3.3118 -0.7002 6 17 3.4485 4.5590 -1.7327 7 6 2.6197 3.4101 0.6804 8 6 2.1165 2.1978 1.1035 9 6 1.7531 1.8430 2.4794 10 8 1.4316 0.7005 2.7485 11 7 1.7753 2.7822 3.4459 12 6 2.0836 4.2103 3.2492 13 6 1.3927 4.9300 4.4371 14 6 1.6176 3.9134 5.5873 15 6 1.5021 2.5509 4.8719 16 1 0.4959 2.1509 4.9964 17 6 2.5290 1.5728 5.4464 18 7 2.4078 0.2815 4.7651 19 6 1.3128 -0.6287 5.1099 20 6 3.3180 -0.0746 3.8061 21 1 3.6311 0.6457 3.0647 22 6 3.8383 -1.3614 3.7867 23 7 3.5238 -2.2128 4.7400 24 14 4.9847 -1.8848 2.4078 25 1 5.1781 -0.7515 1.4679 26 1 6.2959 -2.2841 2.9790 27 1 4.3907 -3.0349 1.6801 28 1 -0.3633 -1.0237 0.0899 29 1 -0.3633 0.5897 0.8416 30 1 -0.3633 0.4340 -0.9315 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.4884 1.6858 -2.0968 34 1 2.8184 4.2732 1.2984 35 1 3.1609 4.3734 3.2785 36 1 1.6717 4.5605 2.3026 37 1 0.3294 5.0746 4.2457 38 1 1.8811 5.8800 4.6541 39 1 0.8446 4.0157 6.3490 40 1 2.6089 4.0373 6.0233 41 1 3.5327 1.9702 5.2962 42 1 2.3467 1.4396 6.5128 43 1 0.4735 -0.4591 4.4355 44 1 1.6535 -1.6596 5.0139 45 1 0.9970 -0.4445 6.1367 46 1 3.8876 -3.1119 4.7266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755199708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:41 Heat of formation + Delta-G solvation = 55.056911 kcal Electronic energy + Delta-G solvation = -29840.584295 eV Core-core repulsion = 25986.771121 eV Total energy + Delta-G solvation = -3853.813174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49483 -40.60264 -38.01360 -37.30803 -36.89541 -35.05358 -33.45724 -32.49831 -30.88719 -30.12016 -29.74799 -27.81095 -26.66739 -25.06707 -24.31555 -23.10279 -22.25808 -21.79581 -20.87483 -19.80633 -18.83923 -18.03102 -17.31232 -17.00885 -16.80466 -16.28795 -16.01155 -15.52117 -15.36993 -15.12766 -14.93959 -14.82862 -14.36747 -14.16645 -14.12188 -13.62479 -13.59158 -13.48706 -13.37320 -13.20762 -13.00612 -12.97210 -12.87861 -12.44771 -12.29969 -12.28593 -12.15398 -11.93328 -11.82173 -11.77619 -11.67576 -11.54824 -11.45040 -10.56314 -10.33479 -9.64141 -9.38838 -9.10454 -8.15476 -7.52487 -5.34226 0.61569 1.17118 1.33266 1.36275 1.44698 1.54355 1.84776 2.48876 2.52180 2.69237 3.44981 3.62845 3.75846 3.78992 3.95483 3.99277 4.08208 4.14898 4.21089 4.26806 4.37884 4.39398 4.56523 4.58498 4.67023 4.73805 4.77672 4.88940 4.90305 4.98882 5.00497 5.04645 5.08080 5.12221 5.20795 5.29639 5.41824 5.48168 5.54263 5.67840 5.82847 5.88278 5.94787 6.16452 6.65649 6.92124 7.33025 7.69627 7.99955 8.56238 9.28804 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.006069 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.003068 B = 4612.153027 C = 6238.236020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 N -0.405 5.405 4 C 0.026 3.974 5 C -0.134 4.134 6 Cl -0.045 7.045 7 C -0.154 4.154 8 C -0.037 4.037 9 C 0.562 3.438 10 O -0.491 6.491 11 N -0.607 5.607 12 C 0.084 3.916 13 C -0.117 4.117 14 C -0.118 4.118 15 C 0.126 3.874 16 H 0.043 0.957 17 C 0.139 3.861 18 N -0.584 5.584 19 C 0.144 3.856 20 C -0.170 4.170 21 H 0.034 0.966 22 C -0.054 4.054 23 N -0.932 5.932 24 Si 0.941 3.059 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.291 1.291 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.203 0.797 34 H 0.175 0.825 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.040 0.960 43 H -0.016 1.016 44 H 0.059 0.941 45 H 0.008 0.992 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 15.938 -8.706 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 N -0.078 5.078 4 C -0.110 4.110 5 C -0.167 4.167 6 Cl -0.017 7.017 7 C -0.180 4.180 8 C -0.151 4.151 9 C 0.350 3.650 10 O -0.365 6.365 11 N -0.344 5.344 12 C -0.038 4.038 13 C -0.155 4.155 14 C -0.156 4.156 15 C 0.020 3.980 16 H 0.061 0.939 17 C 0.011 3.989 18 N -0.305 5.305 19 C -0.001 4.001 20 C -0.302 4.302 21 H 0.052 0.948 22 C -0.247 4.247 23 N -0.581 5.581 24 Si 0.772 3.228 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.218 1.218 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.220 0.780 34 H 0.192 0.808 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.003 0.997 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.597 14.776 -8.661 18.019 hybrid contribution 0.786 -0.897 -0.649 1.358 sum -4.811 13.880 -9.310 17.392 Atomic orbital electron populations 1.21891 0.92765 1.03356 1.02067 1.22114 0.96924 0.78766 1.04824 1.44149 1.45815 1.11857 1.05968 1.22149 1.03953 0.91676 0.93252 1.19968 1.12778 0.91983 0.91980 1.98295 1.85976 1.51233 1.66161 1.21936 1.04526 0.97527 0.93998 1.20327 1.13381 0.92313 0.89120 1.16643 0.80796 0.84566 0.82982 1.91012 1.45289 1.18711 1.81506 1.47934 1.70762 1.08740 1.06953 1.22931 1.00200 0.79945 1.00740 1.22794 1.01491 0.98493 0.92741 1.22638 1.03688 0.91315 0.97962 1.22252 0.98085 0.97184 0.80447 0.93917 1.21365 0.96654 0.86524 0.94310 1.43513 1.28112 1.16006 1.42836 1.20823 0.88648 0.97701 0.92969 1.18726 1.12490 0.95375 1.03614 0.94850 1.25881 1.00597 0.99008 0.99256 1.69904 1.47914 1.05608 1.34665 0.85573 0.79479 0.77611 0.80171 1.20360 1.22060 1.21752 0.89984 0.94322 0.90407 0.86632 0.90870 0.78044 0.80758 0.91378 0.89177 0.90318 0.87116 0.88758 0.89905 0.93953 0.94228 0.99750 0.92269 0.97288 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 10.14 71.98 0.73 -3.22 16 2 C 0.09 2.96 6.11 86.38 0.53 3.48 16 3 N -0.40 -13.07 2.77 -510.89 -1.41 -14.48 16 4 C 0.03 0.69 11.34 83.48 0.95 1.64 16 5 C -0.13 -3.63 6.66 22.04 0.15 -3.49 16 6 Cl -0.05 -1.02 29.30 -2.72 -0.08 -1.10 16 7 C -0.15 -4.58 9.15 22.59 0.21 -4.37 16 8 C -0.04 -1.31 6.83 40.36 0.28 -1.04 16 9 C 0.56 22.89 5.60 86.44 0.48 23.37 16 10 O -0.49 -23.71 8.03 -4.34 -0.03 -23.74 16 11 N -0.61 -20.94 3.06 -792.27 -2.43 -23.37 16 12 C 0.08 2.00 5.15 86.93 0.45 2.45 16 13 C -0.12 -2.06 7.10 32.06 0.23 -1.83 16 14 C -0.12 -2.59 6.47 31.78 0.21 -2.38 16 15 C 0.13 4.27 3.19 45.34 0.14 4.42 16 16 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 17 C 0.14 5.86 5.23 86.38 0.45 6.31 16 18 N -0.58 -30.45 1.59 -726.94 -1.16 -31.61 16 19 C 0.14 7.69 9.68 127.77 1.24 8.92 16 20 C -0.17 -9.64 6.41 84.03 0.54 -9.10 16 21 H 0.03 1.97 6.10 -2.91 -0.02 1.96 16 22 C -0.05 -3.17 5.30 84.86 0.45 -2.72 16 23 N -0.93 -57.53 10.91 21.65 0.24 -57.29 16 24 Si 0.94 47.72 29.56 68.60 2.03 49.75 16 25 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.28 7.74 -2.39 -0.02 1.26 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.12 2.80 8.11 -2.39 -0.02 2.78 16 32 H 0.07 3.05 6.73 -2.39 -0.02 3.03 16 33 H 0.20 3.78 8.06 -2.91 -0.02 3.75 16 34 H 0.18 4.39 4.71 -2.91 -0.01 4.38 16 35 H 0.07 1.59 7.87 -2.39 -0.02 1.57 16 36 H 0.09 1.98 5.62 -2.38 -0.01 1.96 16 37 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 1.74 7.85 -2.39 -0.02 1.72 16 41 H 0.04 1.84 7.94 -2.39 -0.02 1.82 16 42 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 43 H -0.02 -0.85 6.96 -2.39 -0.02 -0.86 16 44 H 0.06 3.59 5.27 -2.39 -0.01 3.57 16 45 H 0.01 0.42 8.00 -2.39 -0.02 0.40 16 46 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -73.21 367.13 5.16 -68.05 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.99 Total: 11.36 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 7.02 Total: 22.44 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -4.76 Total: -126.75 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.03 Total: -23.74 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -73.21 5.16 -68.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755199708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.102 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds