Wall clock time and date at job start Tue Mar 31 2020 23:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46839 * 270.00176 * 3 2 1 5 5 H 1.48500 * 109.47182 * 29.99525 * 3 2 1 6 6 H 1.48500 * 109.47529 * 149.99934 * 3 2 1 7 7 C 1.38813 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99851 * 174.35216 * 7 2 1 9 9 N 1.36934 * 119.99730 * 354.35360 * 7 2 1 10 10 C 1.46930 * 120.62923 * 145.40607 * 9 7 2 11 11 C 1.53197 * 108.89006 * 126.29408 * 10 9 7 12 12 C 1.53349 * 109.14953 * 54.58417 * 11 10 9 13 13 C 1.52994 * 109.41788 * 178.67235 * 12 11 10 14 14 N 1.46504 * 109.47356 * 295.12247 * 13 12 11 15 15 C 1.34776 * 120.00250 * 180.02562 * 14 13 12 16 16 O 1.21584 * 120.00016 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99648 * 179.97438 * 15 14 13 18 18 C 1.40057 * 119.99693 * 185.64974 * 17 15 14 19 19 C 1.38853 * 120.03191 * 34.58294 * 18 17 15 20 20 C 1.38137 * 119.99781 * 180.02562 * 19 18 17 21 21 C 1.38425 * 120.06831 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.96637 * 179.97438 * 21 20 19 23 23 C 1.38668 * 120.06871 * 0.02562 * 21 20 19 24 24 F 1.35104 * 120.00147 * 179.97438 * 23 21 20 25 25 C 1.38329 * 120.00018 * 359.68271 * 23 21 20 26 26 C 1.53048 * 109.60355 * 298.70576 * 12 11 10 27 27 C 1.46927 * 120.63352 * 325.37728 * 9 7 2 28 28 H 0.96993 * 120.00544 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58738 * 246.15445 * 10 9 7 30 30 H 1.08997 * 109.58619 * 6.43667 * 10 9 7 31 31 H 1.09007 * 109.49279 * 174.65336 * 11 10 9 32 32 H 1.08995 * 109.49874 * 294.75257 * 11 10 9 33 33 H 1.08999 * 109.42811 * 58.74227 * 12 11 10 34 34 H 1.09000 * 109.47316 * 55.12301 * 13 12 11 35 35 H 1.09000 * 109.47351 * 175.12255 * 13 12 11 36 36 H 0.97002 * 119.99128 * 359.97438 * 14 13 12 37 37 H 0.96997 * 119.99859 * 5.65230 * 17 15 14 38 38 H 1.07997 * 120.00681 * 0.02562 * 19 18 17 39 39 H 1.07994 * 119.96930 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.03606 * 180.30042 * 25 23 21 41 41 H 1.09002 * 109.49294 * 301.42495 * 26 12 11 42 42 H 1.09002 * 109.51941 * 181.34523 * 26 12 11 43 43 H 1.09001 * 109.58635 * 353.42618 * 27 9 7 44 44 H 1.08999 * 109.58302 * 113.70094 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0863 -1.2043 -0.0915 9 7 1.3306 -2.3851 0.1177 10 6 1.7970 -3.5891 -0.5835 11 6 1.9533 -4.7253 0.4322 12 6 0.6327 -4.9077 1.1900 13 6 0.7716 -6.0632 2.1831 14 7 0.9776 -7.3150 1.4503 15 6 1.1262 -8.4732 2.1233 16 8 1.0889 -8.4794 3.3385 17 7 1.3152 -9.6248 1.4490 18 6 1.3513 -10.8427 2.1395 19 6 0.5490 -11.0321 3.2568 20 6 0.5855 -12.2335 3.9377 21 6 1.4218 -13.2493 3.5077 22 9 1.4563 -14.4232 4.1754 23 6 2.2250 -13.0628 2.3928 24 9 3.0411 -14.0549 1.9746 25 6 2.1863 -11.8631 1.7053 26 6 0.2938 -3.6220 1.9479 27 6 0.1214 -2.4747 0.9476 28 1 -0.4850 0.8399 -0.0004 29 1 1.0690 -3.8749 -1.3425 30 1 2.7580 -3.3872 -1.0566 31 1 2.2072 -5.6478 -0.0902 32 1 2.7458 -4.4762 1.1377 33 1 -0.1642 -5.1320 0.4810 34 1 1.6246 -5.8802 2.8366 35 1 -0.1357 -6.1382 2.7825 36 1 1.0063 -7.3101 0.4807 37 1 1.4263 -9.6100 0.4855 38 1 -0.1036 -10.2403 3.5936 39 1 -0.0390 -12.3804 4.8064 40 1 2.8080 -11.7189 0.8341 41 1 1.1020 -3.3835 2.6393 42 1 -0.6327 -3.7611 2.5051 43 1 -0.0220 -1.5383 1.4867 44 1 -0.7437 -2.6672 0.3130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152969408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:36 Heat of formation + Delta-G solvation = -75.454822 kcal Electronic energy + Delta-G solvation = -28271.260918 eV Core-core repulsion = 23859.991650 eV Total energy + Delta-G solvation = -4411.269268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.77404 -48.84341 -40.99353 -39.00587 -37.85292 -35.19985 -34.91364 -32.93613 -31.29415 -30.88710 -29.88937 -29.30266 -26.79233 -24.26201 -23.81618 -23.14656 -22.24700 -21.22899 -21.02479 -19.37853 -18.89843 -18.52903 -17.93510 -17.20626 -16.76740 -16.61326 -16.39781 -15.73712 -15.26145 -15.19996 -14.95910 -14.80942 -14.51647 -14.41101 -14.13437 -13.75600 -13.54812 -13.39595 -13.21584 -13.17811 -12.70741 -12.41637 -12.38082 -11.94957 -11.77883 -11.38784 -10.97282 -10.80208 -10.69578 -10.59502 -10.46708 -10.28395 -10.23755 -9.98353 -9.62119 -9.51859 -9.45491 -9.20069 -8.51919 -8.47773 -6.60415 -5.82767 -3.34366 0.50905 0.58277 2.18168 2.68960 3.14118 3.33910 3.40791 3.42194 3.45234 3.81332 3.98673 4.18750 4.44762 4.55239 4.61664 4.89120 5.01920 5.14517 5.29724 5.31121 5.38821 5.40521 5.54504 5.64043 5.71149 5.78689 5.83796 5.95166 5.96678 6.05828 6.26840 6.28693 6.38467 6.42301 6.50944 6.56529 6.64860 6.71038 6.77499 6.93429 7.35391 7.59506 7.67122 7.75627 8.20026 8.46826 9.19974 9.79815 10.39455 11.25172 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.001717 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.903487 B =16299.936970 C =16695.545250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.127 4.127 12 C -0.090 4.090 13 C 0.140 3.860 14 N -0.730 5.730 15 C 0.702 3.298 16 O -0.572 6.572 17 N -0.688 5.688 18 C 0.197 3.803 19 C -0.102 4.102 20 C -0.102 4.102 21 C 0.045 3.955 22 F -0.131 7.131 23 C 0.090 3.910 24 F -0.127 7.127 25 C -0.161 4.161 26 C -0.133 4.133 27 C 0.173 3.827 28 H 0.254 0.746 29 H 0.016 0.984 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.411 0.589 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -24.185 2.797 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.167 4.167 12 C -0.109 4.109 13 C 0.016 3.984 14 N -0.384 5.384 15 C 0.402 3.598 16 O -0.449 6.449 17 N -0.336 5.336 18 C 0.100 3.900 19 C -0.122 4.122 20 C -0.122 4.122 21 C 0.024 3.976 22 F -0.110 7.110 23 C 0.069 3.931 24 F -0.106 7.106 25 C -0.183 4.183 26 C -0.173 4.173 27 C 0.047 3.953 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.247 0.753 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.062 -23.963 3.902 24.279 hybrid contribution 0.718 0.479 -0.992 1.315 sum 0.781 -23.484 2.910 23.676 Atomic orbital electron populations 1.69934 1.05298 1.25539 1.54107 1.25273 0.95480 0.98427 1.00034 0.86273 0.79108 0.83507 0.77724 1.21312 1.21569 1.20425 1.19134 0.90126 0.83473 1.45715 0.92042 1.43967 1.29690 1.05820 1.52046 1.20900 0.97613 0.87379 0.92270 1.22138 0.96477 0.98615 0.99426 1.21382 0.98637 0.94064 0.96799 1.21564 1.01640 0.80597 0.94558 1.45290 1.76635 1.06286 1.10234 1.15917 0.78102 0.80150 0.85594 1.90965 1.57124 1.85497 1.11283 1.42671 1.76329 1.03733 1.10883 1.17147 0.94226 0.84721 0.93894 1.21161 0.98758 0.97159 0.95147 1.20982 0.98547 0.91573 1.01065 1.17642 1.01779 0.84191 0.94015 1.91523 1.95612 1.44642 1.79180 1.17250 0.93643 0.86976 0.95258 1.91542 1.70158 1.59414 1.89439 1.20677 1.01602 0.92268 1.03707 1.22200 1.00125 0.95564 0.99432 1.20778 0.87950 0.95853 0.90730 0.93542 0.96653 0.92934 0.93597 0.92171 0.91248 0.91438 0.91578 0.76612 0.75297 0.82908 0.83228 0.83316 0.92388 0.93026 0.89329 0.96429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.02 55.49 0.61 -24.93 16 2 C 0.01 0.18 5.14 -17.43 -0.09 0.09 16 3 Si 0.90 21.22 29.56 -169.99 -5.02 16.20 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.25 -6.78 9.56 -15.06 -0.14 -6.92 16 8 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 9 N -0.59 -14.14 2.98 -172.32 -0.51 -14.66 16 10 C 0.14 2.80 6.51 -3.71 -0.02 2.78 16 11 C -0.13 -1.92 5.27 -26.45 -0.14 -2.06 16 12 C -0.09 -1.28 2.19 -90.42 -0.20 -1.47 16 13 C 0.14 1.74 5.06 -4.04 -0.02 1.72 16 14 N -0.73 -7.33 5.28 -65.23 -0.34 -7.67 16 15 C 0.70 7.77 8.29 -86.92 -0.72 7.05 16 16 O -0.57 -8.46 14.13 5.29 0.07 -8.38 16 17 N -0.69 -5.36 5.35 -14.21 -0.08 -5.43 16 18 C 0.20 1.69 6.25 -83.66 -0.52 1.17 16 19 C -0.10 -0.93 8.65 -39.39 -0.34 -1.27 16 20 C -0.10 -0.84 10.02 -39.55 -0.40 -1.24 16 21 C 0.04 0.42 7.30 -39.35 -0.29 0.13 16 22 F -0.13 -1.36 17.18 2.25 0.04 -1.32 16 23 C 0.09 0.82 7.30 -39.39 -0.29 0.54 16 24 F -0.13 -1.28 17.18 2.25 0.04 -1.24 16 25 C -0.16 -1.23 9.94 -39.34 -0.39 -1.62 16 26 C -0.13 -2.31 5.36 -26.61 -0.14 -2.46 16 27 C 0.17 3.89 5.22 -3.71 -0.02 3.87 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 31 H 0.05 0.55 7.16 -51.92 -0.37 0.18 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.05 7.67 -40.82 -0.31 2.74 16 37 H 0.41 1.83 8.84 -40.82 -0.36 1.47 16 38 H 0.15 1.54 6.52 -52.49 -0.34 1.20 16 39 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.09 2.28 6.20 -51.93 -0.32 1.96 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -31.32 367.77 -9.27 -40.60 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.90 Total: 0.99 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.72 Total: 0.31 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.32 Total: -52.69 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.38 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.08 Total: -2.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.32 -9.27 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152969408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.858 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds