Wall clock time and date at job start Tue Mar 31 2020 23:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46839 * 270.00176 * 3 2 1 5 5 H 1.48500 * 109.47182 * 29.99525 * 3 2 1 6 6 H 1.48500 * 109.47529 * 149.99934 * 3 2 1 7 7 C 1.38813 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99851 * 174.35216 * 7 2 1 9 9 N 1.36934 * 119.99730 * 354.35360 * 7 2 1 10 10 C 1.46930 * 120.62923 * 145.40607 * 9 7 2 11 11 C 1.53197 * 108.89006 * 126.29408 * 10 9 7 12 12 C 1.53349 * 109.14953 * 54.58417 * 11 10 9 13 13 C 1.52994 * 109.41788 * 178.67235 * 12 11 10 14 14 N 1.46504 * 109.47356 * 295.12247 * 13 12 11 15 15 C 1.34776 * 120.00250 * 180.02562 * 14 13 12 16 16 O 1.21584 * 120.00016 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99648 * 179.97438 * 15 14 13 18 18 C 1.40057 * 119.99693 * 185.64974 * 17 15 14 19 19 C 1.38853 * 120.03191 * 34.58294 * 18 17 15 20 20 C 1.38137 * 119.99781 * 180.02562 * 19 18 17 21 21 C 1.38425 * 120.06831 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.96637 * 179.97438 * 21 20 19 23 23 C 1.38668 * 120.06871 * 0.02562 * 21 20 19 24 24 F 1.35104 * 120.00147 * 179.97438 * 23 21 20 25 25 C 1.38329 * 120.00018 * 359.68271 * 23 21 20 26 26 C 1.53048 * 109.60355 * 298.70576 * 12 11 10 27 27 C 1.46927 * 120.63352 * 325.37728 * 9 7 2 28 28 H 0.96993 * 120.00544 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58738 * 246.15445 * 10 9 7 30 30 H 1.08997 * 109.58619 * 6.43667 * 10 9 7 31 31 H 1.09007 * 109.49279 * 174.65336 * 11 10 9 32 32 H 1.08995 * 109.49874 * 294.75257 * 11 10 9 33 33 H 1.08999 * 109.42811 * 58.74227 * 12 11 10 34 34 H 1.09000 * 109.47316 * 55.12301 * 13 12 11 35 35 H 1.09000 * 109.47351 * 175.12255 * 13 12 11 36 36 H 0.97002 * 119.99128 * 359.97438 * 14 13 12 37 37 H 0.96997 * 119.99859 * 5.65230 * 17 15 14 38 38 H 1.07997 * 120.00681 * 0.02562 * 19 18 17 39 39 H 1.07994 * 119.96930 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.03606 * 180.30042 * 25 23 21 41 41 H 1.09002 * 109.49294 * 301.42495 * 26 12 11 42 42 H 1.09002 * 109.51941 * 181.34523 * 26 12 11 43 43 H 1.09001 * 109.58635 * 353.42618 * 27 9 7 44 44 H 1.08999 * 109.58302 * 113.70094 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0863 -1.2043 -0.0915 9 7 1.3306 -2.3851 0.1177 10 6 1.7970 -3.5891 -0.5835 11 6 1.9533 -4.7253 0.4322 12 6 0.6327 -4.9077 1.1900 13 6 0.7716 -6.0632 2.1831 14 7 0.9776 -7.3150 1.4503 15 6 1.1262 -8.4732 2.1233 16 8 1.0889 -8.4794 3.3385 17 7 1.3152 -9.6248 1.4490 18 6 1.3513 -10.8427 2.1395 19 6 0.5490 -11.0321 3.2568 20 6 0.5855 -12.2335 3.9377 21 6 1.4218 -13.2493 3.5077 22 9 1.4563 -14.4232 4.1754 23 6 2.2250 -13.0628 2.3928 24 9 3.0411 -14.0549 1.9746 25 6 2.1863 -11.8631 1.7053 26 6 0.2938 -3.6220 1.9479 27 6 0.1214 -2.4747 0.9476 28 1 -0.4850 0.8399 -0.0004 29 1 1.0690 -3.8749 -1.3425 30 1 2.7580 -3.3872 -1.0566 31 1 2.2072 -5.6478 -0.0902 32 1 2.7458 -4.4762 1.1377 33 1 -0.1642 -5.1320 0.4810 34 1 1.6246 -5.8802 2.8366 35 1 -0.1357 -6.1382 2.7825 36 1 1.0063 -7.3101 0.4807 37 1 1.4263 -9.6100 0.4855 38 1 -0.1036 -10.2403 3.5936 39 1 -0.0390 -12.3804 4.8064 40 1 2.8080 -11.7189 0.8341 41 1 1.1020 -3.3835 2.6393 42 1 -0.6327 -3.7611 2.5051 43 1 -0.0220 -1.5383 1.4867 44 1 -0.7437 -2.6672 0.3130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152969408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:35 Heat of formation + Delta-G solvation = -94.384526 kcal Electronic energy + Delta-G solvation = -28272.081771 eV Core-core repulsion = 23859.991650 eV Total energy + Delta-G solvation = -4412.090121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.50518 -49.58309 -41.78227 -39.88987 -39.13976 -36.44741 -35.74073 -34.46267 -32.51570 -31.92821 -31.39572 -30.18410 -28.21351 -25.80785 -24.48514 -24.11135 -23.65632 -22.56674 -21.94370 -20.74844 -19.77148 -19.32833 -18.65131 -18.60371 -17.90474 -17.34558 -17.18736 -16.87478 -16.55016 -16.10181 -16.00835 -15.71589 -15.52236 -15.45439 -15.25347 -15.06338 -14.94689 -14.75189 -14.14528 -13.97673 -13.89689 -13.81985 -13.49845 -13.29134 -12.93728 -12.76321 -12.59024 -12.43555 -12.27141 -11.99088 -11.82380 -11.59156 -11.52706 -11.30048 -11.12255 -11.06270 -10.53527 -10.16420 -10.05846 -9.17222 -8.53403 -7.85166 -5.39273 -0.18485 -0.05404 1.41638 1.46818 1.47686 1.56645 1.89975 2.43900 2.51049 2.78233 3.08634 3.30532 3.31297 3.57274 3.76498 3.87599 3.89727 3.98427 4.01355 4.13284 4.25583 4.56263 4.59289 4.68874 4.74367 4.76712 4.79269 4.84779 4.99244 5.01482 5.03729 5.07236 5.17511 5.26471 5.33184 5.35228 5.40534 5.49690 5.60359 5.68876 5.74926 5.84999 5.87545 6.46352 6.91148 7.20323 7.40246 7.90449 8.42678 9.19711 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.038143 B = 0.001717 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.903487 B =16299.936970 C =16695.545250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.061 0.939 9 N -0.613 5.613 10 C 0.139 3.861 11 C -0.114 4.114 12 C -0.077 4.077 13 C 0.155 3.845 14 N -0.720 5.720 15 C 0.703 3.297 16 O -0.611 6.611 17 N -0.671 5.671 18 C 0.190 3.810 19 C -0.110 4.110 20 C -0.097 4.097 21 C 0.032 3.968 22 F -0.140 7.140 23 C 0.078 3.922 24 F -0.134 7.134 25 C -0.146 4.146 26 C -0.123 4.123 27 C 0.178 3.822 28 H 0.250 0.750 29 H 0.018 0.982 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.414 0.586 37 H 0.429 0.571 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.176 0.824 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.049 0.951 44 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 -25.794 2.180 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.079 0.921 9 N -0.337 5.337 10 C 0.014 3.986 11 C -0.153 4.153 12 C -0.096 4.096 13 C 0.031 3.969 14 N -0.375 5.375 15 C 0.403 3.597 16 O -0.490 6.490 17 N -0.320 5.320 18 C 0.093 3.907 19 C -0.131 4.131 20 C -0.116 4.116 21 C 0.011 3.989 22 F -0.119 7.119 23 C 0.058 3.942 24 F -0.113 7.113 25 C -0.167 4.167 26 C -0.163 4.163 27 C 0.053 3.947 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.251 0.749 37 H 0.269 0.731 38 H 0.161 0.839 39 H 0.185 0.815 40 H 0.193 0.807 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 0.895 -25.619 3.228 25.837 hybrid contribution 0.465 0.934 -0.827 1.331 sum 1.360 -24.685 2.401 24.839 Atomic orbital electron populations 1.70101 1.06561 1.25731 1.55631 1.25987 0.96256 1.01483 1.00615 0.85300 0.78059 0.79675 0.77554 1.21087 1.21988 1.19579 1.19441 0.90426 0.84885 1.44590 0.92141 1.44255 1.29744 1.06533 1.53195 1.21091 0.97196 0.87058 0.93302 1.21991 0.96491 0.98523 0.98290 1.21196 0.98483 0.93079 0.96845 1.21185 1.01255 0.80736 0.93763 1.45004 1.76362 1.05279 1.10841 1.15977 0.77760 0.80817 0.85125 1.90953 1.58764 1.86128 1.13168 1.42402 1.75408 1.02514 1.11688 1.17232 0.94431 0.85088 0.93969 1.21178 0.99069 0.97151 0.95689 1.21110 0.98268 0.90906 1.01354 1.17847 1.02455 0.84204 0.94406 1.91497 1.95732 1.45192 1.79440 1.17440 0.93803 0.87418 0.95579 1.91524 1.70404 1.59816 1.89527 1.20818 1.00982 0.91038 1.03893 1.21988 1.00848 0.95255 0.98188 1.20563 0.87109 0.96100 0.90978 0.94127 0.96367 0.93280 0.89412 0.93303 0.90254 0.92531 0.91592 0.74851 0.73102 0.83868 0.81537 0.80690 0.93273 0.91208 0.93278 0.98346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.30 11.02 21.65 0.24 -54.06 16 2 C -0.05 -2.63 5.14 84.86 0.44 -2.20 16 3 Si 0.97 44.26 29.56 68.60 2.03 46.28 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.26 -14.16 9.56 84.03 0.80 -13.35 16 8 H 0.06 3.20 7.83 -2.91 -0.02 3.17 16 9 N -0.61 -29.47 2.98 -699.11 -2.08 -31.55 16 10 C 0.14 5.19 6.51 86.36 0.56 5.75 16 11 C -0.11 -3.12 5.27 30.78 0.16 -2.96 16 12 C -0.08 -2.00 2.19 -10.66 -0.02 -2.03 16 13 C 0.15 3.44 5.06 86.38 0.44 3.87 16 14 N -0.72 -11.98 5.28 -478.54 -2.53 -14.50 16 15 C 0.70 13.62 8.29 179.05 1.48 15.11 16 16 O -0.61 -16.98 14.13 -3.98 -0.06 -17.04 16 17 N -0.67 -8.32 5.35 -317.14 -1.70 -10.01 16 18 C 0.19 2.80 6.25 38.11 0.24 3.04 16 19 C -0.11 -1.86 8.65 22.39 0.19 -1.66 16 20 C -0.10 -1.48 10.02 22.29 0.22 -1.26 16 21 C 0.03 0.56 7.30 22.42 0.16 0.73 16 22 F -0.14 -2.81 17.18 44.97 0.77 -2.04 16 23 C 0.08 1.31 7.30 22.39 0.16 1.48 16 24 F -0.13 -2.52 17.18 44.97 0.77 -1.75 16 25 C -0.15 -1.85 9.94 22.43 0.22 -1.63 16 26 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 27 C 0.18 8.18 5.22 86.36 0.45 8.63 16 28 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 31 H 0.09 1.70 7.16 -2.38 -0.02 1.69 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.41 4.48 7.67 -92.71 -0.71 3.77 16 37 H 0.43 2.08 8.84 -92.71 -0.82 1.26 16 38 H 0.14 2.75 6.52 -2.91 -0.02 2.73 16 39 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 2.62 6.20 -2.39 -0.01 2.61 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -69.85 367.77 2.66 -67.19 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.48 Total: 7.97 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.68 Total: 9.51 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -6.07 Total: -110.13 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.06 Total: -17.04 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 1.55 Total: -3.79 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -69.85 2.66 -67.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152969408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.195 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds