Wall clock time and date at job start Tue Mar 31 2020 22:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34752 * 116.99823 * 2 1 4 4 O 1.21500 * 119.99826 * 0.02562 * 3 2 1 5 5 C 1.47478 * 119.99845 * 179.97438 * 3 2 1 6 6 C 1.39760 * 120.07507 * 359.97438 * 5 3 2 7 7 C 1.37765 * 119.99484 * 180.02562 * 6 5 3 8 8 C 1.38847 * 120.15608 * 359.71467 * 7 6 5 9 9 O 1.35789 * 119.92588 * 180.29791 * 8 7 6 10 10 C 1.42901 * 117.00032 * 0.26506 * 9 8 7 11 11 C 1.52997 * 109.47243 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46957 * 304.99499 * 11 10 9 13 13 O 1.42894 * 109.47393 * 64.99657 * 11 10 9 14 14 C 1.53005 * 109.46998 * 184.99956 * 11 10 9 15 15 N 1.46501 * 109.46944 * 179.97438 * 14 11 10 16 16 C 1.46496 * 120.00051 * 90.00006 * 15 14 11 17 17 C 1.36939 * 119.99787 * 269.99657 * 15 14 11 18 18 H 1.07999 * 120.00198 * 23.19556 * 17 15 14 19 19 C 1.38814 * 119.99633 * 203.18760 * 17 15 14 20 20 N 1.31610 * 120.00384 * 13.71531 * 19 17 15 21 21 Si 1.86806 * 119.99698 * 193.70887 * 19 17 15 22 22 H 1.48499 * 109.46706 * 90.00646 * 21 19 17 23 23 H 1.48501 * 109.46742 * 210.00128 * 21 19 17 24 24 H 1.48493 * 109.47104 * 330.00267 * 21 19 17 25 25 C 1.39419 * 120.15314 * 0.56169 * 8 7 6 26 26 O 1.36000 * 119.99944 * 179.71402 * 25 8 7 27 27 C 1.42906 * 116.99786 * 179.73046 * 26 25 8 28 28 C 1.38120 * 119.99898 * 359.44381 * 25 8 7 29 29 H 1.08995 * 109.47188 * 299.99743 * 1 2 3 30 30 H 1.08999 * 109.46943 * 60.00369 * 1 2 3 31 31 H 1.09004 * 109.46734 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00343 * 0.04246 * 6 5 3 33 33 H 1.08001 * 119.92039 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47005 * 299.99740 * 10 9 8 35 35 H 1.09000 * 109.47028 * 59.99481 * 10 9 8 36 36 H 0.96696 * 114.00249 * 60.00552 * 13 11 10 37 37 H 1.09002 * 109.46893 * 299.99582 * 14 11 10 38 38 H 1.08999 * 109.47115 * 59.99475 * 14 11 10 39 39 H 1.09000 * 109.47362 * 95.15772 * 16 15 14 40 40 H 1.09001 * 109.47119 * 215.15630 * 16 15 14 41 41 H 1.09001 * 109.47368 * 335.15231 * 16 15 14 42 42 H 0.97000 * 120.00312 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47114 * 180.02562 * 27 26 25 44 44 H 1.08993 * 109.47507 * 59.99822 * 27 26 25 45 45 H 1.09004 * 109.46730 * 299.99737 * 27 26 25 46 46 H 1.07997 * 120.08019 * 180.25168 * 28 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5365 1.2779 0.0006 6 6 4.2992 0.1067 0.0017 7 6 5.6749 0.1808 0.0027 8 6 6.3069 1.4171 -0.0033 9 8 7.6631 1.4846 -0.0083 10 6 8.3743 0.2451 -0.0130 11 6 9.8792 0.5207 -0.0189 12 1 10.1269 1.1671 -0.8609 13 8 10.2504 1.1649 1.2014 14 6 10.6392 -0.8008 -0.1496 15 7 12.0802 -0.5369 -0.1559 16 6 12.8264 -0.5151 1.1046 17 6 12.7296 -0.3105 -1.3401 18 1 12.1787 0.0428 -2.1992 19 6 14.0961 -0.5352 -1.4361 20 7 14.7196 -1.2118 -0.4951 21 14 15.0500 0.1228 -2.9013 22 1 15.5475 1.4881 -2.5953 23 1 16.2012 -0.7716 -3.1845 24 1 14.1598 0.1747 -4.0887 25 6 5.5522 2.5894 0.0015 26 8 6.1746 3.7986 0.0015 27 6 5.3392 4.9581 0.0004 28 6 4.1727 2.5226 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8102 -0.8562 0.0014 33 1 6.2631 -0.7250 0.0031 34 1 8.1129 -0.3272 0.8771 35 1 8.1060 -0.3243 -0.9028 36 1 10.0586 0.6458 1.9943 37 1 10.3915 -1.4472 0.6924 38 1 10.3561 -1.2922 -1.0805 39 1 13.2725 -1.4941 1.2797 40 1 13.6127 0.2377 1.0484 41 1 12.1492 -0.2726 1.9236 42 1 15.6744 -1.3690 -0.5624 43 1 5.9606 5.8536 0.0001 44 1 4.7093 4.9529 0.8899 45 1 4.7106 4.9522 -0.8901 46 1 3.5868 3.4299 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264291675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:21 Heat of formation + Delta-G solvation = -150.299865 kcal Electronic energy + Delta-G solvation = -29087.311291 eV Core-core repulsion = 24751.591264 eV Total energy + Delta-G solvation = -4335.720028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11758 -40.31255 -38.88594 -37.46078 -36.90526 -36.46393 -34.70333 -31.55144 -31.04711 -30.73412 -29.62661 -28.26537 -27.28085 -26.14385 -25.62982 -23.91238 -22.91143 -21.73467 -21.07025 -20.66912 -19.04457 -18.05415 -17.52160 -16.89654 -16.70092 -16.58478 -16.52785 -16.32043 -15.70619 -15.69845 -14.96330 -14.84283 -14.38504 -14.29138 -14.24794 -13.74521 -13.66543 -13.33087 -13.12334 -12.94395 -12.86433 -12.50646 -12.42521 -11.89953 -11.74187 -11.57798 -11.35419 -11.17112 -11.16223 -11.04977 -10.87262 -10.86170 -10.69656 -10.41996 -10.36149 -10.04727 -9.89221 -9.60785 -9.13873 -8.52835 -8.11785 -6.73529 -5.72777 -3.20299 0.41207 1.00933 2.24385 2.32920 2.99073 3.03426 3.39679 3.42511 3.46101 3.46648 4.37176 4.43838 4.49674 4.63817 4.72098 4.74851 4.80842 4.80916 4.89020 4.94193 4.97135 5.04146 5.12529 5.20017 5.30633 5.31476 5.40382 5.42684 5.61231 5.72739 5.85188 5.86636 5.92002 5.94408 6.02209 6.22703 6.47427 6.63031 6.81790 6.87967 7.35317 7.41741 7.42990 7.72507 7.81058 8.16868 8.38673 9.22259 9.84830 10.33067 11.31251 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.002089 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.963685 B =13399.938716 C =13972.540655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.515 3.485 4 O -0.513 6.513 5 C -0.143 4.143 6 C -0.048 4.048 7 C -0.196 4.196 8 C 0.153 3.847 9 O -0.283 6.283 10 C 0.022 3.978 11 C 0.086 3.914 12 H 0.105 0.895 13 O -0.542 6.542 14 C 0.129 3.871 15 N -0.589 5.589 16 C 0.167 3.833 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.084 3.916 26 O -0.298 6.298 27 C 0.024 3.976 28 C -0.110 4.110 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.361 0.639 37 H 0.042 0.958 38 H 0.059 0.941 39 H 0.028 0.972 40 H 0.039 0.961 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.736 2.842 3.172 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.362 3.638 4 O -0.402 6.402 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.215 4.215 8 C 0.105 3.895 9 O -0.194 6.194 10 C -0.054 4.054 11 C 0.023 3.977 12 H 0.123 0.877 13 O -0.345 6.345 14 C -0.001 4.001 15 N -0.310 5.310 16 C 0.022 3.978 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.550 5.550 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.038 3.962 26 O -0.211 6.211 27 C -0.071 4.071 28 C -0.129 4.129 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.021 0.979 42 H 0.063 0.937 43 H 0.121 0.879 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.191 3.749 2.773 26.603 hybrid contribution -0.206 -0.145 -0.454 0.519 sum -26.397 3.604 2.318 26.742 Atomic orbital electron populations 1.23287 0.75918 1.03829 1.02643 1.86551 1.23586 1.32613 1.84399 1.21063 0.88979 0.81374 0.72431 1.90824 1.66877 1.36056 1.46473 1.18599 0.88861 0.94115 1.12894 1.21146 0.92848 0.97982 0.94661 1.21139 0.95407 0.96380 1.08575 1.18789 0.84116 0.91397 0.95192 1.86338 1.13362 1.33344 1.86389 1.24021 0.94907 0.84690 1.01752 1.23119 0.86708 0.99264 0.88640 0.87744 1.86688 1.86025 1.46931 1.14861 1.21228 0.86646 0.92085 1.00110 1.43694 1.01149 1.82094 1.04052 1.20780 0.93060 0.99964 0.83978 1.19167 0.91433 1.38252 0.89993 0.91489 1.25012 0.97733 0.98740 0.98005 1.70071 1.09070 1.41230 1.34590 0.86243 0.79638 0.78434 0.82142 1.21408 1.21762 1.20451 1.18033 0.89543 0.84937 1.03653 1.86277 1.34458 1.11437 1.88947 1.23123 0.96100 0.86635 1.01257 1.21041 0.92097 0.98299 1.01512 0.91814 0.91805 0.87886 0.83984 0.83547 0.91706 0.90934 0.79395 0.93994 0.92318 0.95347 0.94219 0.97931 0.93717 0.87856 0.92622 0.92628 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.29 16 2 O -0.35 -3.27 9.80 -40.63 -0.40 -3.67 16 3 C 0.52 5.74 7.89 34.50 0.27 6.01 16 4 O -0.51 -6.74 16.13 -19.27 -0.31 -7.05 16 5 C -0.14 -1.56 5.87 -104.98 -0.62 -2.18 16 6 C -0.05 -0.46 9.60 -39.19 -0.38 -0.83 16 7 C -0.20 -2.02 9.01 -39.53 -0.36 -2.38 16 8 C 0.15 2.00 6.71 -38.92 -0.26 1.74 16 9 O -0.28 -4.26 9.87 -40.16 -0.40 -4.66 16 10 C 0.02 0.29 4.37 37.16 0.16 0.45 16 11 C 0.09 1.45 3.52 -26.73 -0.09 1.36 16 12 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 13 O -0.54 -9.80 12.11 -40.08 -0.49 -10.28 16 14 C 0.13 2.41 5.34 -4.04 -0.02 2.39 16 15 N -0.59 -14.49 2.84 -181.12 -0.51 -15.00 16 16 C 0.17 4.08 8.66 59.84 0.52 4.60 16 17 C -0.26 -7.07 9.65 -15.06 -0.15 -7.22 16 18 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 19 C 0.00 0.10 5.09 -17.43 -0.09 0.01 16 20 N -0.91 -26.41 10.76 55.49 0.60 -25.81 16 21 Si 0.91 21.98 29.58 -169.99 -5.03 16.95 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.08 1.08 6.69 -39.19 -0.26 0.81 16 26 O -0.30 -3.95 10.28 -34.41 -0.35 -4.31 16 27 C 0.02 0.21 9.81 101.05 0.99 1.20 16 28 C -0.11 -1.24 8.58 -39.04 -0.33 -1.58 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.14 1.05 7.60 -52.49 -0.40 0.65 16 33 H 0.15 1.22 6.27 -52.49 -0.33 0.89 16 34 H 0.06 0.69 7.64 -51.93 -0.40 0.30 16 35 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 36 H 0.36 5.11 8.79 45.56 0.40 5.51 16 37 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 38 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 39 H 0.03 0.75 7.33 -51.93 -0.38 0.36 16 40 H 0.04 1.07 7.37 -51.93 -0.38 0.68 16 41 H 0.00 0.05 7.00 -51.93 -0.36 -0.32 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 45 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 46 H 0.15 1.50 5.87 -52.49 -0.31 1.19 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -34.77 387.90 -6.44 -41.21 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.85 Total: 1.08 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 0.46 Total: 5.68 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.08 Total: -40.81 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -1.94 Total: -29.96 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.77 -6.44 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264291675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.089 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds