Wall clock time and date at job start Tue Mar 31 2020 22:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34752 * 116.99823 * 2 1 4 4 O 1.21500 * 119.99826 * 0.02562 * 3 2 1 5 5 C 1.47478 * 119.99845 * 179.97438 * 3 2 1 6 6 C 1.39760 * 120.07507 * 359.97438 * 5 3 2 7 7 C 1.37765 * 119.99484 * 180.02562 * 6 5 3 8 8 C 1.38847 * 120.15608 * 359.71467 * 7 6 5 9 9 O 1.35789 * 119.92588 * 180.29791 * 8 7 6 10 10 C 1.42901 * 117.00032 * 0.26506 * 9 8 7 11 11 C 1.52997 * 109.47243 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46957 * 304.99499 * 11 10 9 13 13 O 1.42894 * 109.47393 * 64.99657 * 11 10 9 14 14 C 1.53005 * 109.46998 * 184.99956 * 11 10 9 15 15 N 1.46501 * 109.46944 * 179.97438 * 14 11 10 16 16 C 1.46496 * 120.00051 * 90.00006 * 15 14 11 17 17 C 1.36939 * 119.99787 * 269.99657 * 15 14 11 18 18 H 1.07999 * 120.00198 * 23.19556 * 17 15 14 19 19 C 1.38814 * 119.99633 * 203.18760 * 17 15 14 20 20 N 1.31610 * 120.00384 * 13.71531 * 19 17 15 21 21 Si 1.86806 * 119.99698 * 193.70887 * 19 17 15 22 22 H 1.48499 * 109.46706 * 90.00646 * 21 19 17 23 23 H 1.48501 * 109.46742 * 210.00128 * 21 19 17 24 24 H 1.48493 * 109.47104 * 330.00267 * 21 19 17 25 25 C 1.39419 * 120.15314 * 0.56169 * 8 7 6 26 26 O 1.36000 * 119.99944 * 179.71402 * 25 8 7 27 27 C 1.42906 * 116.99786 * 179.73046 * 26 25 8 28 28 C 1.38120 * 119.99898 * 359.44381 * 25 8 7 29 29 H 1.08995 * 109.47188 * 299.99743 * 1 2 3 30 30 H 1.08999 * 109.46943 * 60.00369 * 1 2 3 31 31 H 1.09004 * 109.46734 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00343 * 0.04246 * 6 5 3 33 33 H 1.08001 * 119.92039 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47005 * 299.99740 * 10 9 8 35 35 H 1.09000 * 109.47028 * 59.99481 * 10 9 8 36 36 H 0.96696 * 114.00249 * 60.00552 * 13 11 10 37 37 H 1.09002 * 109.46893 * 299.99582 * 14 11 10 38 38 H 1.08999 * 109.47115 * 59.99475 * 14 11 10 39 39 H 1.09000 * 109.47362 * 95.15772 * 16 15 14 40 40 H 1.09001 * 109.47119 * 215.15630 * 16 15 14 41 41 H 1.09001 * 109.47368 * 335.15231 * 16 15 14 42 42 H 0.97000 * 120.00312 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47114 * 180.02562 * 27 26 25 44 44 H 1.08993 * 109.47507 * 59.99822 * 27 26 25 45 45 H 1.09004 * 109.46730 * 299.99737 * 27 26 25 46 46 H 1.07997 * 120.08019 * 180.25168 * 28 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5365 1.2779 0.0006 6 6 4.2992 0.1067 0.0017 7 6 5.6749 0.1808 0.0027 8 6 6.3069 1.4171 -0.0033 9 8 7.6631 1.4846 -0.0083 10 6 8.3743 0.2451 -0.0130 11 6 9.8792 0.5207 -0.0189 12 1 10.1269 1.1671 -0.8609 13 8 10.2504 1.1649 1.2014 14 6 10.6392 -0.8008 -0.1496 15 7 12.0802 -0.5369 -0.1559 16 6 12.8264 -0.5151 1.1046 17 6 12.7296 -0.3105 -1.3401 18 1 12.1787 0.0428 -2.1992 19 6 14.0961 -0.5352 -1.4361 20 7 14.7196 -1.2118 -0.4951 21 14 15.0500 0.1228 -2.9013 22 1 15.5475 1.4881 -2.5953 23 1 16.2012 -0.7716 -3.1845 24 1 14.1598 0.1747 -4.0887 25 6 5.5522 2.5894 0.0015 26 8 6.1746 3.7986 0.0015 27 6 5.3392 4.9581 0.0004 28 6 4.1727 2.5226 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8102 -0.8562 0.0014 33 1 6.2631 -0.7250 0.0031 34 1 8.1129 -0.3272 0.8771 35 1 8.1060 -0.3243 -0.9028 36 1 10.0586 0.6458 1.9943 37 1 10.3915 -1.4472 0.6924 38 1 10.3561 -1.2922 -1.0805 39 1 13.2725 -1.4941 1.2797 40 1 13.6127 0.2377 1.0484 41 1 12.1492 -0.2726 1.9236 42 1 15.6744 -1.3690 -0.5624 43 1 5.9606 5.8536 0.0001 44 1 4.7093 4.9529 0.8899 45 1 4.7106 4.9522 -0.8901 46 1 3.5868 3.4299 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264291675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:20 Heat of formation + Delta-G solvation = -174.115743 kcal Electronic energy + Delta-G solvation = -29088.344025 eV Core-core repulsion = 24751.591264 eV Total energy + Delta-G solvation = -4336.752762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96082 -41.15641 -39.89743 -38.65165 -37.87750 -37.37827 -36.45498 -33.32137 -32.12216 -31.58751 -30.91722 -28.94349 -27.97167 -27.89021 -27.26376 -24.81235 -24.08862 -22.94290 -22.22063 -21.93573 -19.89232 -19.03308 -18.75433 -18.33865 -17.53973 -17.52220 -17.37827 -17.34211 -16.91909 -16.72902 -16.62194 -15.80431 -15.64030 -15.59080 -15.19410 -14.95578 -14.70433 -14.62095 -14.41970 -13.96556 -13.79357 -13.63585 -13.40478 -13.01729 -12.99733 -12.81842 -12.59322 -12.51575 -12.38912 -12.19535 -12.11786 -11.99843 -11.96432 -11.87291 -11.82859 -11.73149 -11.67370 -11.08725 -10.56666 -9.95598 -9.01360 -8.71794 -7.81187 -5.30236 -0.44090 0.20491 1.39807 1.45418 1.48495 1.55739 1.62433 2.01668 2.27200 2.51989 2.59904 3.30811 3.52503 3.62495 3.66549 3.75729 3.84797 3.95510 4.06604 4.09327 4.15144 4.31340 4.32466 4.33798 4.34853 4.44755 4.47827 4.51299 4.58519 4.66988 4.71370 4.85535 4.93436 4.99623 5.08139 5.11861 5.22124 5.26808 5.40856 5.44130 5.64094 5.74596 6.01324 6.33844 6.48370 6.62193 6.99980 7.16609 7.89132 8.31260 9.20543 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.019174 B = 0.002089 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.963685 B =13399.938716 C =13972.540655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.518 3.482 4 O -0.539 6.539 5 C -0.151 4.151 6 C -0.038 4.038 7 C -0.186 4.186 8 C 0.130 3.870 9 O -0.312 6.312 10 C 0.031 3.969 11 C 0.097 3.903 12 H 0.070 0.930 13 O -0.566 6.566 14 C 0.126 3.874 15 N -0.609 5.609 16 C 0.182 3.818 17 C -0.262 4.262 18 H 0.069 0.931 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.266 1.266 25 C 0.067 3.933 26 O -0.328 6.328 27 C 0.017 3.983 28 C -0.111 4.111 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.136 0.864 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.378 0.622 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.005 0.995 40 H 0.002 0.998 41 H 0.039 0.961 42 H 0.248 0.752 43 H 0.116 0.884 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.190 1.706 3.078 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.365 3.635 4 O -0.431 6.431 5 C -0.152 4.152 6 C -0.056 4.056 7 C -0.205 4.205 8 C 0.083 3.917 9 O -0.225 6.225 10 C -0.044 4.044 11 C 0.035 3.965 12 H 0.088 0.912 13 O -0.372 6.372 14 C -0.001 4.001 15 N -0.331 5.331 16 C 0.037 3.963 17 C -0.393 4.393 18 H 0.086 0.914 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.793 3.207 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.191 1.191 25 C 0.021 3.979 26 O -0.243 6.243 27 C -0.077 4.077 28 C -0.130 4.130 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.154 0.846 32 H 0.187 0.813 33 H 0.189 0.811 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.226 0.774 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.023 0.977 40 H 0.021 0.979 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.135 0.865 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.712 2.600 2.678 28.954 hybrid contribution 0.361 0.223 -0.382 0.571 sum -28.351 2.823 2.296 28.584 Atomic orbital electron populations 1.23608 0.74151 1.06008 1.02641 1.86536 1.25291 1.31353 1.83800 1.21114 0.89035 0.81583 0.71792 1.90812 1.67435 1.37026 1.47858 1.18777 0.89102 0.94532 1.12826 1.21425 0.92528 0.98571 0.93066 1.21405 0.95807 0.96138 1.07101 1.19062 0.83305 0.92545 0.96779 1.86254 1.14703 1.34267 1.87251 1.23830 0.91815 0.84514 1.04264 1.22655 0.89599 0.96874 0.87385 0.91233 1.86643 1.86581 1.48025 1.15922 1.21446 0.83446 0.93450 1.01714 1.43927 1.03572 1.82535 1.03107 1.20500 0.92934 0.97434 0.85414 1.19494 0.91875 1.36919 0.90972 0.91354 1.25754 0.98827 0.99710 1.00653 1.70217 1.08801 1.42907 1.36363 0.85303 0.78329 0.77236 0.79820 1.21891 1.21952 1.19108 1.18262 0.90090 0.85020 1.04480 1.86225 1.36276 1.12529 1.89249 1.23355 0.96385 0.85784 1.02191 1.21099 0.91621 0.98959 1.01287 0.91835 0.91880 0.84636 0.81294 0.81066 0.88597 0.88889 0.77374 0.91041 0.91677 0.97724 0.97904 0.94274 0.94328 0.86528 0.91621 0.91717 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 113.37 1.20 1.48 16 2 O -0.35 -5.63 9.80 -56.63 -0.56 -6.19 16 3 C 0.52 10.68 7.89 70.26 0.55 11.23 16 4 O -0.54 -13.69 16.13 19.84 0.32 -13.37 16 5 C -0.15 -3.01 5.87 -20.10 -0.12 -3.13 16 6 C -0.04 -0.60 9.60 22.53 0.22 -0.39 16 7 C -0.19 -3.25 9.01 22.30 0.20 -3.05 16 8 C 0.13 3.20 6.71 22.70 0.15 3.35 16 9 O -0.31 -9.00 9.87 -71.03 -0.70 -9.70 16 10 C 0.03 0.72 4.37 71.98 0.31 1.04 16 11 C 0.10 3.16 3.52 30.59 0.11 3.27 16 12 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 13 O -0.57 -19.73 12.11 -144.34 -1.75 -21.48 16 14 C 0.13 4.50 5.34 86.38 0.46 4.96 16 15 N -0.61 -29.76 2.84 -726.93 -2.07 -31.83 16 16 C 0.18 8.95 8.66 127.77 1.11 10.06 16 17 C -0.26 -14.37 9.65 84.03 0.81 -13.56 16 18 H 0.07 3.64 7.87 -2.91 -0.02 3.62 16 19 C -0.05 -3.08 5.09 84.86 0.43 -2.64 16 20 N -0.94 -55.82 10.76 21.65 0.23 -55.59 16 21 Si 0.96 45.76 29.58 68.60 2.03 47.79 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.07 1.68 6.69 22.53 0.15 1.83 16 26 O -0.33 -8.78 10.28 -79.53 -0.82 -9.60 16 27 C 0.02 0.29 9.81 113.37 1.11 1.40 16 28 C -0.11 -2.40 8.58 22.62 0.19 -2.21 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.14 0.43 8.14 -2.38 -0.02 0.42 16 32 H 0.17 1.76 7.60 -2.91 -0.02 1.74 16 33 H 0.17 2.05 6.27 -2.91 -0.02 2.04 16 34 H 0.10 1.64 7.64 -2.38 -0.02 1.62 16 35 H 0.09 1.77 7.66 -2.39 -0.02 1.75 16 36 H 0.38 9.82 8.79 -74.06 -0.65 9.17 16 37 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 38 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 39 H 0.00 0.24 7.33 -2.39 -0.02 0.22 16 40 H 0.00 0.12 7.37 -2.39 -0.02 0.10 16 41 H 0.04 1.59 7.00 -2.39 -0.02 1.57 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.12 1.58 8.14 -2.39 -0.02 1.57 16 44 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 45 H 0.06 0.95 7.66 -2.38 -0.02 0.93 16 46 H 0.15 3.03 5.87 -2.91 -0.02 3.01 16 Total: -1.00 -77.28 387.90 3.94 -73.33 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.36 Total: 13.00 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.89 Total: 13.64 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.83 Total: -87.42 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -3.50 Total: -60.34 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -77.28 3.94 -73.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264291675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.782 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds