Wall clock time and date at job start Tue Mar 31 2020 23:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48499 * 109.47434 * 270.00437 * 3 2 1 5 5 H 1.48502 * 109.47106 * 30.00234 * 3 2 1 6 6 H 1.48497 * 109.46882 * 150.00277 * 3 2 1 7 7 C 1.37872 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47564 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47390 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00081 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00162 * 5.07834 * 12 11 10 14 14 N 1.34779 * 120.00220 * 185.07797 * 12 11 10 15 15 C 1.47082 * 120.88573 * 174.99731 * 14 12 11 16 16 C 1.53235 * 108.52454 * 231.16629 * 15 14 12 17 17 N 1.46899 * 109.33877 * 306.16965 * 16 15 14 18 18 C 1.39839 * 110.99669 * 187.25043 * 17 16 15 19 19 C 1.38804 * 120.07107 * 300.00247 * 18 17 16 20 20 C 1.38353 * 119.92838 * 180.02562 * 19 18 17 21 21 F 1.35099 * 119.97175 * 180.02562 * 20 19 18 22 22 C 1.38487 * 120.05861 * 359.97438 * 20 19 18 23 23 C 1.38277 * 120.13862 * 0.02562 * 22 20 19 24 24 C 1.38277 * 120.06741 * 359.97438 * 23 22 20 25 25 F 1.35101 * 120.02891 * 180.02562 * 24 23 22 26 26 C 1.46900 * 111.26799 * 63.10678 * 17 16 15 27 27 C 1.47079 * 120.87750 * 354.98267 * 14 12 11 28 28 H 0.97000 * 120.00547 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47325 * 60.00053 * 9 7 2 30 30 H 1.09002 * 109.46975 * 300.00443 * 9 7 2 31 31 H 1.09003 * 109.47039 * 60.00094 * 10 9 7 32 32 H 1.09002 * 109.47119 * 300.00089 * 10 9 7 33 33 H 0.97005 * 120.00028 * 359.97438 * 11 10 9 34 34 H 1.08998 * 109.62565 * 111.45133 * 15 14 12 35 35 H 1.09004 * 109.62484 * 350.87911 * 15 14 12 36 36 H 1.08999 * 109.49108 * 186.20792 * 16 15 14 37 37 H 1.09003 * 109.49358 * 66.12837 * 16 15 14 38 38 H 1.07996 * 120.03541 * 0.27173 * 19 18 17 39 39 H 1.07998 * 119.93322 * 180.02562 * 22 20 19 40 40 H 1.08001 * 119.96632 * 180.02562 * 23 22 20 41 41 H 1.08996 * 109.49280 * 56.85304 * 26 17 16 42 42 H 1.08998 * 109.49190 * 176.93187 * 26 17 16 43 43 H 1.09003 * 109.62776 * 248.53827 * 27 14 12 44 44 H 1.09000 * 109.63316 * 9.12101 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.3990 -6.1000 0.0933 14 7 1.5170 -7.2629 -0.1046 15 6 2.2371 -8.5405 -0.2160 16 6 1.6830 -9.3082 -1.4209 17 7 0.2244 -9.4265 -1.2934 18 6 -0.2995 -10.2597 -2.2867 19 6 -0.1289 -9.9375 -3.6261 20 6 -0.6489 -10.7637 -4.6064 21 9 -0.4830 -10.4512 -5.9103 22 6 -1.3385 -11.9113 -4.2524 23 6 -1.5099 -12.2348 -2.9190 24 6 -0.9925 -11.4130 -1.9347 25 9 -1.1600 -11.7301 -0.6321 26 6 -0.4214 -8.1073 -1.3183 27 6 0.0465 -7.2903 -0.1092 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.5428 -4.9308 -0.0011 34 1 2.0874 -9.1255 0.6914 35 1 3.3006 -8.3499 -0.3608 36 1 2.1272 -10.3030 -1.4538 37 1 1.9256 -8.7706 -2.3376 38 1 0.4125 -9.0449 -3.9026 39 1 -1.7432 -12.5550 -5.0194 40 1 -2.0478 -13.1307 -2.6461 41 1 -0.1495 -7.5865 -2.2364 42 1 -1.5035 -8.2312 -1.2768 43 1 -0.3140 -7.7553 0.8084 44 1 -0.3386 -6.2733 -0.1834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273088117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:59 Heat of formation + Delta-G solvation = -73.975269 kcal Electronic energy + Delta-G solvation = -28869.902916 eV Core-core repulsion = 24458.697806 eV Total energy + Delta-G solvation = -4411.205110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.36482 -49.15509 -40.73002 -39.56729 -37.70505 -34.99702 -34.71907 -32.89422 -31.45063 -31.00195 -30.30893 -29.35610 -26.91249 -24.79611 -23.95830 -23.73061 -22.60453 -21.55338 -20.90496 -19.41350 -18.60974 -18.00384 -17.61309 -17.45811 -16.53815 -16.33729 -15.94245 -15.75458 -15.64163 -15.54169 -15.26572 -14.84150 -14.68292 -14.56743 -14.48814 -14.13017 -13.91484 -13.59917 -13.52899 -12.98876 -12.74390 -12.60287 -12.32456 -12.23501 -12.08589 -11.69637 -11.58070 -11.34850 -11.15309 -11.04114 -10.63625 -10.34016 -9.93515 -9.65815 -9.55868 -9.27550 -9.21545 -8.97080 -8.74474 -8.47115 -8.22183 -6.10127 -4.12720 0.39960 0.46536 2.73939 2.79369 3.16322 3.29172 3.35398 3.39945 3.50664 3.69331 3.76467 4.09942 4.15305 4.35467 4.42126 4.51115 4.58511 4.68952 4.82897 4.88674 4.96291 5.02907 5.21551 5.27120 5.34248 5.37993 5.44132 5.48945 5.53174 5.60173 5.62825 5.82912 6.10336 6.20390 6.37087 6.38302 6.51147 6.71056 6.75560 6.96697 7.13623 7.54020 7.61513 7.88864 8.22394 8.33842 8.89723 8.95215 9.52127 11.01577 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002138 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.168858 B =13095.484540 C =13729.158501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.738 5.738 12 C 0.704 3.296 13 O -0.594 6.594 14 N -0.639 5.639 15 C 0.138 3.862 16 C 0.044 3.956 17 N -0.497 5.497 18 C 0.085 3.915 19 C -0.155 4.155 20 C 0.099 3.901 21 F -0.134 7.134 22 C -0.127 4.127 23 C -0.122 4.122 24 C 0.117 3.883 25 F -0.121 7.121 26 C 0.045 3.955 27 C 0.118 3.882 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.392 0.608 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -27.687 -6.862 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.394 5.394 12 C 0.405 3.595 13 O -0.473 6.473 14 N -0.378 5.378 15 C 0.014 3.986 16 C -0.083 4.083 17 N -0.219 5.219 18 C -0.011 4.011 19 C -0.176 4.176 20 C 0.079 3.921 21 F -0.113 7.113 22 C -0.146 4.146 23 C -0.142 4.142 24 C 0.097 3.903 25 F -0.099 7.099 26 C -0.082 4.082 27 C -0.006 4.006 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.227 0.773 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.270 -27.685 -6.312 28.880 hybrid contribution -0.045 1.299 -0.871 1.565 sum -5.316 -26.385 -7.183 27.858 Atomic orbital electron populations 1.69949 1.06092 1.26876 1.50446 1.24993 0.94897 0.99413 0.94999 0.86508 0.79862 0.82981 0.78188 1.20575 1.21170 1.19703 1.21043 0.93277 0.90329 1.51260 0.92208 1.19318 0.94242 0.91102 0.97749 1.21610 0.95675 0.80402 1.00679 1.45706 1.09884 1.05341 1.78456 1.15951 0.85308 0.80325 0.77910 1.90880 1.12030 1.86136 1.58256 1.47327 1.05847 1.05604 1.79023 1.21461 0.97536 0.82580 0.97014 1.22684 0.85542 1.01290 0.98758 1.59608 1.05466 1.12639 1.44139 1.18566 0.98903 0.94292 0.89290 1.21640 1.02414 1.01319 0.92215 1.17539 1.00576 0.95732 0.78275 1.91543 1.93746 1.92766 1.33216 1.21037 1.00104 0.96575 0.96881 1.20981 1.01262 1.00603 0.91314 1.17549 0.99624 0.94218 0.78947 1.91543 1.93295 1.92165 1.32919 1.22630 0.99604 0.87312 0.98670 1.21688 0.80481 1.00345 0.98136 0.92850 0.96062 0.95966 0.92627 0.92878 0.77258 0.90930 0.88138 0.89186 0.93403 0.83920 0.83568 0.83256 0.93209 0.89058 0.90286 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 10 C 0.14 2.99 5.62 -4.04 -0.02 2.97 16 11 N -0.74 -13.17 5.47 -65.23 -0.36 -13.53 16 12 C 0.70 12.44 8.31 -86.92 -0.72 11.72 16 13 O -0.59 -12.74 15.83 5.29 0.08 -12.66 16 14 N -0.64 -8.48 3.01 -178.19 -0.54 -9.01 16 15 C 0.14 1.56 6.58 -3.60 -0.02 1.53 16 16 C 0.04 0.41 5.25 -3.70 -0.02 0.39 16 17 N -0.50 -4.61 4.43 -170.75 -0.76 -5.37 16 18 C 0.08 0.73 4.67 -83.68 -0.39 0.34 16 19 C -0.15 -1.27 8.71 -39.33 -0.34 -1.61 16 20 C 0.10 0.77 7.30 -39.45 -0.29 0.48 16 21 F -0.13 -1.21 17.27 2.25 0.04 -1.17 16 22 C -0.13 -0.75 10.02 -39.48 -0.40 -1.14 16 23 C -0.12 -0.72 10.02 -39.55 -0.40 -1.12 16 24 C 0.12 0.96 7.31 -39.26 -0.29 0.67 16 25 F -0.12 -1.16 17.08 2.25 0.04 -1.13 16 26 C 0.04 0.41 5.30 -3.70 -0.02 0.39 16 27 C 0.12 1.21 6.59 -3.60 -0.02 1.19 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 6.05 5.97 -40.82 -0.24 5.81 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.27 7.10 -51.93 -0.37 0.90 16 36 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.05 0.47 7.39 -51.93 -0.38 0.09 16 38 H 0.14 1.17 7.18 -52.49 -0.38 0.79 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.05 0.48 7.62 -51.93 -0.40 0.08 16 42 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.89 5.63 -51.93 -0.29 0.59 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -32.71 370.64 -9.50 -42.21 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.82 Total: 1.20 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -3.48 Total: 2.82 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.91 Total: -53.21 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.71 -9.50 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273088117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.766 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds