Wall clock time and date at job start Tue Mar 31 2020 23:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48499 * 109.47434 * 270.00437 * 3 2 1 5 5 H 1.48502 * 109.47106 * 30.00234 * 3 2 1 6 6 H 1.48497 * 109.46882 * 150.00277 * 3 2 1 7 7 C 1.37872 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47564 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47390 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00081 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00162 * 5.07834 * 12 11 10 14 14 N 1.34779 * 120.00220 * 185.07797 * 12 11 10 15 15 C 1.47082 * 120.88573 * 174.99731 * 14 12 11 16 16 C 1.53235 * 108.52454 * 231.16629 * 15 14 12 17 17 N 1.46899 * 109.33877 * 306.16965 * 16 15 14 18 18 C 1.39839 * 110.99669 * 187.25043 * 17 16 15 19 19 C 1.38804 * 120.07107 * 300.00247 * 18 17 16 20 20 C 1.38353 * 119.92838 * 180.02562 * 19 18 17 21 21 F 1.35099 * 119.97175 * 180.02562 * 20 19 18 22 22 C 1.38487 * 120.05861 * 359.97438 * 20 19 18 23 23 C 1.38277 * 120.13862 * 0.02562 * 22 20 19 24 24 C 1.38277 * 120.06741 * 359.97438 * 23 22 20 25 25 F 1.35101 * 120.02891 * 180.02562 * 24 23 22 26 26 C 1.46900 * 111.26799 * 63.10678 * 17 16 15 27 27 C 1.47079 * 120.87750 * 354.98267 * 14 12 11 28 28 H 0.97000 * 120.00547 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47325 * 60.00053 * 9 7 2 30 30 H 1.09002 * 109.46975 * 300.00443 * 9 7 2 31 31 H 1.09003 * 109.47039 * 60.00094 * 10 9 7 32 32 H 1.09002 * 109.47119 * 300.00089 * 10 9 7 33 33 H 0.97005 * 120.00028 * 359.97438 * 11 10 9 34 34 H 1.08998 * 109.62565 * 111.45133 * 15 14 12 35 35 H 1.09004 * 109.62484 * 350.87911 * 15 14 12 36 36 H 1.08999 * 109.49108 * 186.20792 * 16 15 14 37 37 H 1.09003 * 109.49358 * 66.12837 * 16 15 14 38 38 H 1.07996 * 120.03541 * 0.27173 * 19 18 17 39 39 H 1.07998 * 119.93322 * 180.02562 * 22 20 19 40 40 H 1.08001 * 119.96632 * 180.02562 * 23 22 20 41 41 H 1.08996 * 109.49280 * 56.85304 * 26 17 16 42 42 H 1.08998 * 109.49190 * 176.93187 * 26 17 16 43 43 H 1.09003 * 109.62776 * 248.53827 * 27 14 12 44 44 H 1.09000 * 109.63316 * 9.12101 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.3990 -6.1000 0.0933 14 7 1.5170 -7.2629 -0.1046 15 6 2.2371 -8.5405 -0.2160 16 6 1.6830 -9.3082 -1.4209 17 7 0.2244 -9.4265 -1.2934 18 6 -0.2995 -10.2597 -2.2867 19 6 -0.1289 -9.9375 -3.6261 20 6 -0.6489 -10.7637 -4.6064 21 9 -0.4830 -10.4512 -5.9103 22 6 -1.3385 -11.9113 -4.2524 23 6 -1.5099 -12.2348 -2.9190 24 6 -0.9925 -11.4130 -1.9347 25 9 -1.1600 -11.7301 -0.6321 26 6 -0.4214 -8.1073 -1.3183 27 6 0.0465 -7.2903 -0.1092 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.5428 -4.9308 -0.0011 34 1 2.0874 -9.1255 0.6914 35 1 3.3006 -8.3499 -0.3608 36 1 2.1272 -10.3030 -1.4538 37 1 1.9256 -8.7706 -2.3376 38 1 0.4125 -9.0449 -3.9026 39 1 -1.7432 -12.5550 -5.0194 40 1 -2.0478 -13.1307 -2.6461 41 1 -0.1495 -7.5865 -2.2364 42 1 -1.5035 -8.2312 -1.2768 43 1 -0.3140 -7.7553 0.8084 44 1 -0.3386 -6.2733 -0.1834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273088117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:58 Heat of formation + Delta-G solvation = -94.115789 kcal Electronic energy + Delta-G solvation = -28870.776274 eV Core-core repulsion = 24458.697806 eV Total energy + Delta-G solvation = -4412.078468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.00048 -49.80538 -41.70436 -40.57331 -38.57227 -36.67001 -35.77738 -34.82244 -32.47378 -31.74704 -31.27327 -30.68916 -27.91139 -26.53830 -24.85830 -24.47351 -23.33762 -22.98367 -22.26975 -20.60868 -19.54273 -18.80090 -18.49966 -18.27583 -18.14214 -17.34836 -16.92800 -16.85114 -16.58566 -16.42120 -16.38738 -16.00877 -15.70627 -15.38988 -15.37306 -15.24067 -15.17217 -14.93326 -14.31874 -14.28576 -13.97324 -13.63902 -13.49184 -13.19007 -12.94150 -12.89883 -12.83788 -12.53414 -12.50135 -12.34028 -12.24778 -12.08385 -11.67544 -11.47373 -11.17668 -10.60820 -10.26555 -10.20482 -9.91715 -9.56942 -9.47514 -8.24323 -6.34431 -0.15959 -0.09185 1.41644 1.42303 1.52671 1.57839 2.07037 2.24607 2.39841 2.46217 2.92917 3.10599 3.12325 3.17803 3.54963 3.73817 3.84582 3.87285 4.00079 4.04325 4.11454 4.18226 4.33796 4.45336 4.47009 4.50717 4.62165 4.68938 4.76338 4.83213 4.85291 4.87946 4.94124 4.98081 5.05774 5.28178 5.38851 5.50017 5.54275 5.58364 5.64245 5.77520 5.87264 6.07819 6.16762 6.78432 6.93185 7.34808 7.50718 8.87630 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002138 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.168858 B =13095.484540 C =13729.158501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.702 3.298 13 O -0.635 6.635 14 N -0.630 5.630 15 C 0.136 3.864 16 C 0.053 3.947 17 N -0.499 5.499 18 C 0.073 3.927 19 C -0.160 4.160 20 C 0.086 3.914 21 F -0.144 7.144 22 C -0.114 4.114 23 C -0.110 4.110 24 C 0.106 3.894 25 F -0.131 7.131 26 C 0.049 3.951 27 C 0.115 3.885 28 H 0.266 0.734 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.404 0.596 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.040 0.960 38 H 0.136 0.864 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.043 0.957 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -29.164 -7.326 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.036 3.964 11 N -0.391 5.391 12 C 0.403 3.597 13 O -0.517 6.517 14 N -0.368 5.368 15 C 0.013 3.987 16 C -0.074 4.074 17 N -0.220 5.220 18 C -0.022 4.022 19 C -0.181 4.181 20 C 0.066 3.934 21 F -0.123 7.123 22 C -0.133 4.133 23 C -0.129 4.129 24 C 0.086 3.914 25 F -0.110 7.110 26 C -0.078 4.078 27 C -0.008 4.008 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.242 0.758 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.154 0.846 39 H 0.191 0.809 40 H 0.196 0.804 41 H 0.061 0.939 42 H 0.125 0.875 43 H 0.111 0.889 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.228 -29.214 -6.784 30.631 hybrid contribution 0.175 1.645 -0.749 1.816 sum -6.053 -27.569 -7.533 29.213 Atomic orbital electron populations 1.70049 1.07495 1.28005 1.51010 1.25855 0.95805 1.03041 0.94422 0.85452 0.78634 0.78490 0.78520 1.19756 1.20487 1.19119 1.21451 0.93597 0.91873 1.51517 0.92321 1.19113 0.94189 0.91604 0.96327 1.21089 0.94656 0.81074 0.99591 1.45400 1.10358 1.04490 1.78808 1.16044 0.84849 0.81115 0.77679 1.90848 1.13924 1.86879 1.60093 1.47366 1.07239 1.04779 1.77426 1.21588 0.96719 0.81799 0.98567 1.22578 0.85993 1.01606 0.97213 1.59597 1.05153 1.12617 1.44665 1.18549 0.99859 0.94675 0.89100 1.21569 1.02781 1.01394 0.92326 1.17757 1.01337 0.96579 0.77741 1.91519 1.93925 1.92966 1.33878 1.21334 0.98621 0.95758 0.97576 1.21273 1.00172 1.00803 0.90607 1.17770 1.00155 0.94533 0.78959 1.91519 1.93446 1.92251 1.33751 1.22591 1.00469 0.87165 0.97535 1.21903 0.78358 1.01060 0.99504 0.92524 0.97280 0.97326 0.93862 0.93825 0.75808 0.89723 0.89689 0.87579 0.94160 0.84647 0.80872 0.80439 0.93906 0.87454 0.88921 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.15 13.29 21.44 0.28 -53.86 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.61 9.11 25.60 0.23 -30.38 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.28 5.09 29.84 0.15 1.43 16 10 C 0.16 7.05 5.62 86.38 0.49 7.54 16 11 N -0.73 -26.51 5.47 -478.54 -2.62 -29.13 16 12 C 0.70 25.11 8.31 179.05 1.49 26.60 16 13 O -0.64 -27.89 15.83 -3.98 -0.06 -27.95 16 14 N -0.63 -16.54 3.01 -835.93 -2.52 -19.06 16 15 C 0.14 3.03 6.58 86.35 0.57 3.60 16 16 C 0.05 0.95 5.25 86.38 0.45 1.40 16 17 N -0.50 -8.64 4.43 -694.13 -3.08 -11.72 16 18 C 0.07 1.16 4.67 38.20 0.18 1.34 16 19 C -0.16 -2.47 8.71 22.43 0.20 -2.28 16 20 C 0.09 1.21 7.30 22.36 0.16 1.37 16 21 F -0.14 -2.47 17.27 44.97 0.78 -1.69 16 22 C -0.11 -1.01 10.02 22.34 0.22 -0.79 16 23 C -0.11 -0.95 10.02 22.29 0.22 -0.73 16 24 C 0.11 1.51 7.31 22.48 0.16 1.67 16 25 F -0.13 -2.27 17.08 44.97 0.77 -1.51 16 26 C 0.05 0.84 5.30 86.38 0.46 1.30 16 27 C 0.11 2.24 6.59 86.35 0.57 2.81 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.04 2.00 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 33 H 0.40 12.51 5.97 -92.70 -0.55 11.95 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 2.18 7.10 -2.39 -0.02 2.17 16 36 H 0.11 1.57 8.09 -2.39 -0.02 1.55 16 37 H 0.04 0.79 7.39 -2.39 -0.02 0.77 16 38 H 0.14 2.23 7.18 -2.91 -0.02 2.21 16 39 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 41 H 0.04 0.80 7.62 -2.39 -0.02 0.78 16 42 H 0.11 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.09 1.75 5.63 -2.39 -0.01 1.73 16 Total: -1.00 -70.51 370.64 2.08 -68.42 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.49 Total: 15.00 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.02 Total: 15.77 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -7.92 Total: -113.77 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.06 Total: -27.95 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 1.54 Total: -3.20 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.51 2.08 -68.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273088117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.692 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds