Wall clock time and date at job start Tue Mar 31 2020 22:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48505 * 109.47274 * 275.41243 * 3 2 1 5 5 H 1.48492 * 109.47100 * 35.41176 * 3 2 1 6 6 H 1.48500 * 109.47158 * 155.41406 * 3 2 1 7 7 C 1.39945 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99885 * 341.73377 * 7 2 1 9 9 C 1.41429 * 119.99926 * 161.73160 * 7 2 1 10 10 C 1.40781 * 120.18242 * 330.17726 * 9 7 2 11 11 C 1.37711 * 120.04519 * 180.02562 * 10 9 7 12 12 C 1.38375 * 120.41017 * 359.74010 * 11 10 9 13 13 C 1.39882 * 120.35643 * 0.51517 * 12 11 10 14 14 C 1.47881 * 120.02284 * 179.76360 * 13 12 11 15 15 O 1.21551 * 119.99576 * 179.44985 * 14 13 12 16 16 N 1.34771 * 120.00313 * 359.72158 * 14 13 12 17 17 C 1.46499 * 120.00364 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47599 * 179.97438 * 17 16 14 19 19 H 1.09008 * 109.46890 * 60.00184 * 18 17 16 20 20 O 1.42898 * 109.47538 * 300.00565 * 18 17 16 21 21 C 1.53003 * 109.47448 * 179.97438 * 18 17 16 22 22 C 1.53003 * 109.47170 * 185.00420 * 21 18 17 23 23 C 1.50694 * 109.46820 * 180.02562 * 22 21 18 24 24 C 1.38237 * 120.00032 * 269.72125 * 23 22 21 25 25 C 1.38230 * 119.99787 * 179.76605 * 24 23 22 26 26 C 1.38240 * 120.00436 * 0.51518 * 25 24 23 27 27 C 1.38238 * 119.99370 * 359.74365 * 26 25 24 28 28 C 1.38233 * 120.00209 * 359.97438 * 27 26 25 29 29 C 1.39028 * 119.94871 * 359.48550 * 13 12 11 30 30 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.97630 * 0.04200 * 10 9 7 32 32 H 1.07999 * 119.79649 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.81931 * 180.25330 * 12 11 10 34 34 H 0.97007 * 120.00111 * 359.97438 * 16 14 13 35 35 H 1.08996 * 109.47126 * 300.00541 * 17 16 14 36 36 H 1.09008 * 109.46849 * 59.99976 * 17 16 14 37 37 H 0.96698 * 113.99518 * 299.99637 * 20 18 17 38 38 H 1.09001 * 109.47067 * 305.00495 * 21 18 17 39 39 H 1.09000 * 109.46434 * 65.00488 * 21 18 17 40 40 H 1.09006 * 109.47012 * 300.00466 * 22 21 18 41 41 H 1.08998 * 109.46796 * 60.00185 * 22 21 18 42 42 H 1.07999 * 119.99984 * 0.02562 * 24 23 22 43 43 H 1.08003 * 120.00129 * 180.23003 * 25 24 23 44 44 H 1.08000 * 120.00435 * 179.72438 * 26 25 24 45 45 H 1.08001 * 119.99605 * 179.97438 * 27 26 25 46 46 H 1.08003 * 119.99922 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.20233 * 180.22529 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1125 -1.3939 5 1 1.5016 2.6169 0.8112 6 1 3.5924 1.4098 0.5825 7 6 2.0080 -1.2120 -0.0005 8 1 1.5088 -2.1238 0.2922 9 6 3.3688 -1.2427 -0.3845 10 6 3.8625 -0.3101 -1.3164 11 6 5.1879 -0.3428 -1.6887 12 6 6.0442 -1.2858 -1.1480 13 6 5.5706 -2.2239 -0.2247 14 6 6.4910 -3.2317 0.3446 15 8 6.0812 -4.0402 1.1544 16 7 7.7854 -3.2502 -0.0303 17 6 8.6974 -4.2482 0.5340 18 6 10.0960 -4.0516 -0.0542 19 1 10.4555 -3.0518 0.1898 20 8 10.0416 -4.2048 -1.4739 21 6 11.0485 -5.0935 0.5358 22 6 12.4714 -4.8199 0.0443 23 6 13.4094 -5.8465 0.6248 24 6 14.0345 -5.6061 1.8341 25 6 14.8912 -6.5499 2.3689 26 6 15.1311 -7.7297 1.6894 27 6 14.5101 -7.9677 0.4776 28 6 13.6489 -7.0264 -0.0545 29 6 4.2352 -2.2043 0.1617 30 1 -0.4850 0.8400 -0.0004 31 1 3.2013 0.4318 -1.7395 32 1 5.5623 0.3742 -2.4042 33 1 7.0829 -1.3003 -1.4436 34 1 8.1133 -2.6026 -0.6739 35 1 8.7385 -4.1315 1.6169 36 1 8.3381 -5.2479 0.2897 37 1 9.7295 -5.0729 -1.7640 38 1 11.0224 -5.0348 1.6239 39 1 10.7395 -6.0893 0.2180 40 1 12.4975 -4.8785 -1.0439 41 1 12.7803 -3.8241 0.3620 42 1 13.8503 -4.6827 2.3630 43 1 15.3767 -6.3637 3.3155 44 1 15.8039 -8.4651 2.1052 45 1 14.6978 -8.8892 -0.0535 46 1 13.1641 -7.2123 -1.0015 47 1 3.8660 -2.9243 0.8770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273217808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:55 Heat of formation + Delta-G solvation = -63.193027 kcal Electronic energy + Delta-G solvation = -27034.546758 eV Core-core repulsion = 23145.745980 eV Total energy + Delta-G solvation = -3888.800778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.84410 -39.47845 -38.15206 -37.18582 -34.29023 -34.11817 -33.64559 -31.24474 -31.17738 -30.44981 -30.00184 -27.87950 -25.28442 -24.42832 -22.93203 -22.66497 -21.91912 -21.19933 -20.66948 -19.91380 -18.04804 -17.13753 -16.85417 -16.50161 -16.27501 -15.69284 -15.62690 -15.46286 -15.13589 -14.66807 -14.50833 -14.22859 -13.80294 -13.71083 -13.62350 -13.38417 -13.36532 -12.98454 -12.74752 -12.73708 -12.41340 -12.30894 -11.99436 -11.60503 -11.58577 -11.44460 -11.14974 -11.10936 -11.04875 -10.78593 -10.54575 -10.37838 -10.01451 -9.72263 -9.44601 -9.28205 -9.16260 -9.01535 -8.87238 -7.87035 -7.75981 -7.00714 -4.55472 0.99237 1.04058 1.91009 2.51621 3.05333 3.17259 3.25702 3.33776 3.47340 3.61192 3.93008 4.13522 4.28383 4.44883 4.48374 4.49992 4.65164 4.69107 4.75596 4.89810 4.99450 5.11325 5.18135 5.21254 5.32142 5.35799 5.40648 5.48203 5.65554 5.68459 5.70833 5.82671 5.87079 5.89198 6.03905 6.11024 6.16058 6.28981 6.38465 6.62727 6.65238 6.66504 6.70277 6.97605 7.20883 7.33257 7.40819 7.49928 7.74754 7.79990 8.01285 8.27907 8.52990 8.67856 8.72360 10.01453 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.001650 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.976282 B =16964.221752 C =17157.288426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.443 4.443 8 H 0.093 0.907 9 C 0.081 3.919 10 C -0.221 4.221 11 C -0.083 4.083 12 C -0.215 4.215 13 C -0.109 4.109 14 C 0.563 3.437 15 O -0.550 6.550 16 N -0.729 5.729 17 C 0.089 3.911 18 C 0.096 3.904 19 H 0.106 0.894 20 O -0.556 6.556 21 C -0.142 4.142 22 C -0.077 4.077 23 C -0.080 4.080 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.118 4.118 29 C -0.136 4.136 30 H 0.286 0.714 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.377 0.623 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.043 -9.200 0.020 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.471 4.471 8 H 0.111 0.889 9 C 0.078 3.922 10 C -0.241 4.241 11 C -0.102 4.102 12 C -0.235 4.235 13 C -0.112 4.112 14 C 0.353 3.647 15 O -0.429 6.429 16 N -0.383 5.383 17 C -0.036 4.036 18 C 0.037 3.963 19 H 0.124 0.876 20 O -0.362 6.362 21 C -0.180 4.180 22 C -0.114 4.114 23 C -0.080 4.080 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.136 4.136 29 C -0.157 4.157 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.241 0.759 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.224 0.776 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 26.683 -9.090 0.649 28.196 hybrid contribution 0.198 0.424 -0.234 0.524 sum 26.881 -8.666 0.414 28.246 Atomic orbital electron populations 1.69691 1.08090 1.30376 1.34570 1.26167 0.94754 1.01744 0.90926 0.86309 0.81368 0.79733 0.78862 1.19551 1.21648 1.16716 1.19516 0.92935 0.96319 1.38348 0.88860 1.17699 0.93153 0.91085 0.90216 1.21185 0.95706 1.04252 1.02918 1.20520 0.93728 0.97393 0.98533 1.20412 0.98057 1.00565 1.04432 1.19420 0.94255 0.97002 1.00535 1.18805 0.81449 0.83915 0.80523 1.90697 1.76856 1.41019 1.34346 1.45817 1.09340 1.35670 1.47468 1.21964 0.89332 0.93230 0.99055 1.22212 0.92802 1.00219 0.81106 0.87617 1.86589 1.89290 1.39577 1.20728 1.22205 0.94388 0.99565 1.01848 1.20551 0.92513 0.97135 1.01248 1.19960 0.97435 0.95628 0.94981 1.21099 0.97344 0.99582 0.95627 1.21168 0.98479 0.94173 0.99864 1.21161 1.00293 0.97527 0.95590 1.21168 0.97191 0.99255 0.96093 1.21088 0.98663 0.93744 1.00076 1.21269 0.91086 1.01953 1.01350 0.90322 0.87881 0.88252 0.88488 0.75862 0.90884 0.91494 0.77557 0.90444 0.91018 0.90108 0.90845 0.86063 0.86143 0.86249 0.86149 0.86063 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.18 13.93 55.55 0.77 -20.40 16 2 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 3 Si 0.91 20.38 24.52 -169.99 -4.17 16.21 16 4 H -0.27 -5.79 6.71 56.52 0.38 -5.41 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 7 C -0.44 -11.95 9.57 -37.73 -0.36 -12.31 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 C 0.08 2.06 5.10 -106.87 -0.55 1.52 16 10 C -0.22 -5.17 7.17 -38.81 -0.28 -5.45 16 11 C -0.08 -1.71 10.01 -39.72 -0.40 -2.11 16 12 C -0.21 -4.18 9.55 -38.92 -0.37 -4.56 16 13 C -0.11 -2.34 5.87 -105.04 -0.62 -2.96 16 14 C 0.56 11.03 7.77 -12.32 -0.10 10.93 16 15 O -0.55 -12.40 16.33 5.32 0.09 -12.32 16 16 N -0.73 -10.60 5.40 -61.24 -0.33 -10.93 16 17 C 0.09 1.01 5.34 -4.04 -0.02 0.99 16 18 C 0.10 0.78 3.05 -26.73 -0.08 0.70 16 19 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 20 O -0.56 -4.81 12.62 -35.23 -0.44 -5.26 16 21 C -0.14 -0.95 4.88 -26.73 -0.13 -1.08 16 22 C -0.08 -0.52 5.24 -27.88 -0.15 -0.66 16 23 C -0.08 -0.60 5.13 -104.63 -0.54 -1.14 16 24 C -0.12 -0.88 9.70 -39.58 -0.38 -1.26 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 26 C -0.13 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 28 C -0.12 -0.87 9.70 -39.58 -0.38 -1.25 16 29 C -0.14 -3.30 9.34 -38.44 -0.36 -3.66 16 30 H 0.29 6.80 8.30 -40.82 -0.34 6.47 16 31 H 0.10 2.39 4.72 -52.48 -0.25 2.14 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.55 6.38 -52.49 -0.33 1.21 16 34 H 0.40 5.31 6.37 -40.82 -0.26 5.05 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.38 2.31 9.05 45.56 0.41 2.72 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.55 7.77 -51.93 -0.40 0.15 16 41 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 47 H 0.11 2.84 7.64 -52.49 -0.40 2.44 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -30.82 391.84 -10.07 -40.89 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.90 Total: 9.89 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -6.00 Total: -23.99 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.44 Total: -31.33 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.36 Total: -17.58 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.17 Total: 16.21 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.82 -10.07 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273217808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.302 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds