Wall clock time and date at job start Tue Mar 31 2020 22:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48505 * 109.47274 * 275.41243 * 3 2 1 5 5 H 1.48492 * 109.47100 * 35.41176 * 3 2 1 6 6 H 1.48500 * 109.47158 * 155.41406 * 3 2 1 7 7 C 1.39945 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99885 * 341.73377 * 7 2 1 9 9 C 1.41429 * 119.99926 * 161.73160 * 7 2 1 10 10 C 1.40781 * 120.18242 * 330.17726 * 9 7 2 11 11 C 1.37711 * 120.04519 * 180.02562 * 10 9 7 12 12 C 1.38375 * 120.41017 * 359.74010 * 11 10 9 13 13 C 1.39882 * 120.35643 * 0.51517 * 12 11 10 14 14 C 1.47881 * 120.02284 * 179.76360 * 13 12 11 15 15 O 1.21551 * 119.99576 * 179.44985 * 14 13 12 16 16 N 1.34771 * 120.00313 * 359.72158 * 14 13 12 17 17 C 1.46499 * 120.00364 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47599 * 179.97438 * 17 16 14 19 19 H 1.09008 * 109.46890 * 60.00184 * 18 17 16 20 20 O 1.42898 * 109.47538 * 300.00565 * 18 17 16 21 21 C 1.53003 * 109.47448 * 179.97438 * 18 17 16 22 22 C 1.53003 * 109.47170 * 185.00420 * 21 18 17 23 23 C 1.50694 * 109.46820 * 180.02562 * 22 21 18 24 24 C 1.38237 * 120.00032 * 269.72125 * 23 22 21 25 25 C 1.38230 * 119.99787 * 179.76605 * 24 23 22 26 26 C 1.38240 * 120.00436 * 0.51518 * 25 24 23 27 27 C 1.38238 * 119.99370 * 359.74365 * 26 25 24 28 28 C 1.38233 * 120.00209 * 359.97438 * 27 26 25 29 29 C 1.39028 * 119.94871 * 359.48550 * 13 12 11 30 30 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 31 31 H 1.08006 * 119.97630 * 0.04200 * 10 9 7 32 32 H 1.07999 * 119.79649 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.81931 * 180.25330 * 12 11 10 34 34 H 0.97007 * 120.00111 * 359.97438 * 16 14 13 35 35 H 1.08996 * 109.47126 * 300.00541 * 17 16 14 36 36 H 1.09008 * 109.46849 * 59.99976 * 17 16 14 37 37 H 0.96698 * 113.99518 * 299.99637 * 20 18 17 38 38 H 1.09001 * 109.47067 * 305.00495 * 21 18 17 39 39 H 1.09000 * 109.46434 * 65.00488 * 21 18 17 40 40 H 1.09006 * 109.47012 * 300.00466 * 22 21 18 41 41 H 1.08998 * 109.46796 * 60.00185 * 22 21 18 42 42 H 1.07999 * 119.99984 * 0.02562 * 24 23 22 43 43 H 1.08003 * 120.00129 * 180.23003 * 25 24 23 44 44 H 1.08000 * 120.00435 * 179.72438 * 26 25 24 45 45 H 1.08001 * 119.99605 * 179.97438 * 27 26 25 46 46 H 1.08003 * 119.99922 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.20233 * 180.22529 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1125 -1.3939 5 1 1.5016 2.6169 0.8112 6 1 3.5924 1.4098 0.5825 7 6 2.0080 -1.2120 -0.0005 8 1 1.5088 -2.1238 0.2922 9 6 3.3688 -1.2427 -0.3845 10 6 3.8625 -0.3101 -1.3164 11 6 5.1879 -0.3428 -1.6887 12 6 6.0442 -1.2858 -1.1480 13 6 5.5706 -2.2239 -0.2247 14 6 6.4910 -3.2317 0.3446 15 8 6.0812 -4.0402 1.1544 16 7 7.7854 -3.2502 -0.0303 17 6 8.6974 -4.2482 0.5340 18 6 10.0960 -4.0516 -0.0542 19 1 10.4555 -3.0518 0.1898 20 8 10.0416 -4.2048 -1.4739 21 6 11.0485 -5.0935 0.5358 22 6 12.4714 -4.8199 0.0443 23 6 13.4094 -5.8465 0.6248 24 6 14.0345 -5.6061 1.8341 25 6 14.8912 -6.5499 2.3689 26 6 15.1311 -7.7297 1.6894 27 6 14.5101 -7.9677 0.4776 28 6 13.6489 -7.0264 -0.0545 29 6 4.2352 -2.2043 0.1617 30 1 -0.4850 0.8400 -0.0004 31 1 3.2013 0.4318 -1.7395 32 1 5.5623 0.3742 -2.4042 33 1 7.0829 -1.3003 -1.4436 34 1 8.1133 -2.6026 -0.6739 35 1 8.7385 -4.1315 1.6169 36 1 8.3381 -5.2479 0.2897 37 1 9.7295 -5.0729 -1.7640 38 1 11.0224 -5.0348 1.6239 39 1 10.7395 -6.0893 0.2180 40 1 12.4975 -4.8785 -1.0439 41 1 12.7803 -3.8241 0.3620 42 1 13.8503 -4.6827 2.3630 43 1 15.3767 -6.3637 3.3155 44 1 15.8039 -8.4651 2.1052 45 1 14.6978 -8.8892 -0.0535 46 1 13.1641 -7.2123 -1.0015 47 1 3.8660 -2.9243 0.8770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273217808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:54 Heat of formation + Delta-G solvation = -82.817162 kcal Electronic energy + Delta-G solvation = -27035.397724 eV Core-core repulsion = 23145.745980 eV Total energy + Delta-G solvation = -3889.651744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.08408 -40.22496 -39.26625 -38.61364 -35.65942 -35.31278 -34.76886 -32.65067 -31.85066 -31.73110 -31.32047 -28.78250 -27.06899 -25.44583 -24.00609 -23.42616 -22.72027 -22.40336 -21.80807 -21.39155 -19.67167 -18.21331 -17.63610 -17.59271 -17.30702 -17.22177 -16.59390 -16.38990 -16.17463 -16.02131 -15.65674 -15.48325 -15.09667 -14.83255 -14.56258 -14.41299 -14.31879 -14.07289 -14.02115 -13.81524 -13.54623 -13.41101 -13.24152 -12.85915 -12.83590 -12.67970 -12.31411 -12.07564 -11.96108 -11.80049 -11.73439 -11.61344 -11.57498 -11.25794 -11.08237 -10.77190 -10.19815 -9.79085 -9.63158 -9.55589 -9.54532 -8.91772 -6.55785 0.17515 0.48097 0.53115 0.73975 1.25631 1.41727 1.48612 1.94707 2.12689 2.15812 2.65057 2.90635 3.44326 3.49047 3.61982 3.80395 3.95128 3.96712 4.09499 4.19332 4.26005 4.28693 4.34660 4.37740 4.42407 4.53986 4.58735 4.65300 4.69412 4.72784 4.84005 4.88736 4.90682 4.91955 5.14914 5.15671 5.18947 5.26519 5.34913 5.40309 5.42291 5.61508 5.64933 5.66452 5.71598 5.77714 5.84150 6.10371 6.16985 6.29458 6.56586 6.65719 6.73805 6.80247 7.23155 8.17243 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.001650 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.976282 B =16964.221752 C =17157.288426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.968 3.032 4 H -0.246 1.246 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.490 4.490 8 H 0.049 0.951 9 C 0.065 3.935 10 C -0.225 4.225 11 C -0.083 4.083 12 C -0.181 4.181 13 C -0.115 4.115 14 C 0.560 3.440 15 O -0.589 6.589 16 N -0.704 5.704 17 C 0.084 3.916 18 C 0.113 3.887 19 H 0.114 0.886 20 O -0.565 6.565 21 C -0.134 4.134 22 C -0.070 4.070 23 C -0.091 4.091 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.131 4.131 29 C -0.167 4.167 30 H 0.295 0.705 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.416 0.584 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.388 0.612 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.131 0.869 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.270 -7.774 -1.623 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.169 4.169 3 Si 0.790 3.210 4 H -0.171 1.171 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.063 3.937 10 C -0.244 4.244 11 C -0.100 4.100 12 C -0.201 4.201 13 C -0.118 4.118 14 C 0.349 3.651 15 O -0.471 6.471 16 N -0.357 5.357 17 C -0.039 4.039 18 C 0.053 3.947 19 H 0.132 0.868 20 O -0.372 6.372 21 C -0.172 4.172 22 C -0.107 4.107 23 C -0.091 4.091 24 C -0.150 4.150 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.148 4.148 28 C -0.148 4.148 29 C -0.188 4.188 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.254 0.746 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.238 0.762 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 30.951 -7.675 -1.028 31.905 hybrid contribution -0.846 -0.194 0.227 0.897 sum 30.105 -7.869 -0.801 31.127 Atomic orbital electron populations 1.69723 1.09314 1.31654 1.36745 1.26906 0.95430 1.04377 0.90201 0.85455 0.79533 0.75922 0.80067 1.17105 1.20352 1.17574 1.19458 0.94531 0.95734 1.42172 0.93264 1.17778 0.92501 0.92359 0.91090 1.21393 0.97440 1.03453 1.02114 1.21048 0.92294 0.98067 0.98623 1.21003 1.00242 0.97737 1.01091 1.19723 0.93451 0.97926 1.00690 1.18596 0.82859 0.83235 0.80370 1.90688 1.77855 1.42361 1.36148 1.45640 1.07757 1.35869 1.46460 1.22232 0.90434 0.92173 0.99089 1.22075 0.90627 1.01071 0.80912 0.86815 1.86568 1.89297 1.40703 1.20631 1.22115 0.94127 0.99226 1.01754 1.20483 0.92040 0.97107 1.01110 1.20113 0.97806 0.95964 0.95197 1.21329 0.97592 1.00189 0.95898 1.21444 0.98547 0.94256 1.00566 1.21452 1.00540 0.97943 0.95699 1.21448 0.97097 0.99882 0.96365 1.21318 0.98977 0.93912 1.00638 1.21193 0.92886 1.02335 1.02377 0.89426 0.87551 0.83488 0.83476 0.74552 0.91193 0.91679 0.76244 0.90440 0.90764 0.90110 0.90429 0.85132 0.84748 0.84702 0.84704 0.85092 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.00 13.93 21.83 0.30 -46.70 16 2 C 0.05 2.45 5.40 85.26 0.46 2.91 16 3 Si 0.97 41.82 24.52 68.60 1.68 43.50 16 4 H -0.25 -9.66 6.71 99.48 0.67 -8.99 16 5 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.25 -11.08 6.86 99.48 0.68 -10.40 16 7 C -0.49 -28.38 9.57 23.47 0.22 -28.15 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 C 0.07 3.40 5.10 -21.32 -0.11 3.29 16 10 C -0.22 -10.11 7.17 22.77 0.16 -9.95 16 11 C -0.08 -2.99 10.01 22.18 0.22 -2.77 16 12 C -0.18 -6.21 9.55 22.70 0.22 -5.99 16 13 C -0.11 -4.77 5.87 -20.14 -0.12 -4.88 16 14 C 0.56 21.19 7.77 86.80 0.67 21.87 16 15 O -0.59 -26.82 16.33 -3.88 -0.06 -26.88 16 16 N -0.70 -18.23 5.40 -465.95 -2.52 -20.75 16 17 C 0.08 1.70 5.34 86.38 0.46 2.16 16 18 C 0.11 1.45 3.05 30.59 0.09 1.54 16 19 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 20 O -0.56 -7.61 12.62 -148.98 -1.88 -9.49 16 21 C -0.13 -1.45 4.88 30.60 0.15 -1.30 16 22 C -0.07 -0.76 5.24 29.85 0.16 -0.60 16 23 C -0.09 -1.21 5.13 -19.87 -0.10 -1.31 16 24 C -0.13 -1.76 9.70 22.27 0.22 -1.54 16 25 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 26 C -0.14 -1.71 10.05 22.27 0.22 -1.49 16 27 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 28 C -0.13 -1.72 9.70 22.27 0.22 -1.50 16 29 C -0.17 -8.42 9.34 23.01 0.21 -8.20 16 30 H 0.30 14.56 8.30 -92.71 -0.77 13.79 16 31 H 0.11 4.69 4.72 -2.91 -0.01 4.68 16 32 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.15 3.61 6.38 -2.91 -0.02 3.59 16 34 H 0.42 8.83 6.37 -92.70 -0.59 8.24 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.39 3.41 9.05 -74.06 -0.67 2.74 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.89 7.77 -2.38 -0.02 0.87 16 41 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 42 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 43 H 0.13 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 45 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 46 H 0.13 1.35 8.06 -2.91 -0.02 1.32 16 47 H 0.09 4.78 7.64 -2.91 -0.02 4.76 16 Total: -1.00 -71.56 391.84 1.01 -70.55 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.33 Total: 28.52 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 3.81 Total: -38.76 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -2.21 Total: -67.44 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.94 Total: -36.37 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.68 Total: 43.50 kcal Total: -71.56 1.01 -70.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273217808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.267 kcal (2) G-P(sol) polarization free energy of solvation -71.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds