Wall clock time and date at job start Tue Mar 31 2020 22:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86803 * 119.99594 * 2 1 4 4 H 1.48503 * 109.47047 * 274.66455 * 3 2 1 5 5 H 1.48497 * 109.47349 * 34.66208 * 3 2 1 6 6 H 1.48498 * 109.46765 * 154.66587 * 3 2 1 7 7 C 1.40223 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00026 * 162.20459 * 7 2 1 9 9 C 1.41114 * 119.99644 * 342.19907 * 7 2 1 10 10 C 1.40893 * 120.09748 * 155.06801 * 9 7 2 11 11 C 1.36315 * 119.88481 * 180.29801 * 10 9 7 12 12 C 1.40014 * 120.10857 * 359.47208 * 11 10 9 13 13 C 1.47642 * 119.89046 * 180.25454 * 12 11 10 14 14 O 1.21591 * 119.99334 * 180.24767 * 13 12 11 15 15 N 1.34771 * 120.00628 * 0.25312 * 13 12 11 16 16 C 1.46505 * 120.00394 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47046 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.47216 * 59.99895 * 17 16 15 19 19 O 1.42899 * 109.47074 * 299.99804 * 17 16 15 20 20 C 1.53000 * 109.46526 * 179.97438 * 17 16 15 21 21 C 1.53005 * 109.46527 * 185.00182 * 20 17 16 22 22 C 1.50703 * 109.46873 * 180.02562 * 21 20 17 23 23 C 1.38228 * 120.00174 * 269.72621 * 22 21 20 24 24 C 1.38234 * 120.00200 * 179.76695 * 23 22 21 25 25 C 1.38230 * 119.99842 * 0.50554 * 24 23 22 26 26 C 1.38234 * 120.00450 * 359.74510 * 25 24 23 27 27 C 1.38237 * 119.99554 * 0.02562 * 26 25 24 28 28 C 1.40007 * 120.20866 * 0.50874 * 12 11 10 29 29 C 1.36315 * 120.10882 * 359.76744 * 28 12 11 30 30 H 0.96989 * 119.99852 * 359.97438 * 1 2 3 31 31 H 1.07993 * 120.05469 * 0.02562 * 10 9 7 32 32 H 1.08009 * 119.94050 * 179.69890 * 11 10 9 33 33 H 0.97006 * 119.99866 * 359.97438 * 15 13 12 34 34 H 1.09000 * 109.46801 * 299.99590 * 16 15 13 35 35 H 1.08997 * 109.47271 * 59.99250 * 16 15 13 36 36 H 0.96700 * 113.99447 * 299.99750 * 19 17 16 37 37 H 1.08998 * 109.47264 * 304.99586 * 20 17 16 38 38 H 1.08997 * 109.47567 * 65.00365 * 20 17 16 39 39 H 1.08998 * 109.46862 * 299.99650 * 21 20 17 40 40 H 1.08991 * 109.47693 * 59.99982 * 21 20 17 41 41 H 1.08006 * 120.00211 * 359.97438 * 23 22 21 42 42 H 1.08003 * 120.00077 * 180.22475 * 24 23 22 43 43 H 1.08003 * 120.00363 * 179.72722 * 25 24 23 44 44 H 1.07997 * 120.00623 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00018 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.94458 * 179.75437 * 28 12 11 47 47 H 1.08003 * 120.05534 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3893 2.1034 -1.3955 5 1 1.4906 2.6223 0.7962 6 1 3.5838 1.4138 0.5991 7 6 2.0077 -1.2143 -0.0005 8 1 3.0490 -1.2366 -0.2864 9 6 1.3528 -2.4073 0.3725 10 6 1.8232 -3.6488 -0.0991 11 6 1.1836 -4.7981 0.2591 12 6 0.0676 -4.7470 1.1031 13 6 -0.6181 -5.9952 1.4926 14 8 -1.5901 -5.9526 2.2219 15 7 -0.1667 -7.1816 1.0399 16 6 -0.8475 -8.4201 1.4259 17 6 -0.1399 -9.6134 0.7808 18 1 0.8959 -9.6477 1.1186 19 8 -0.1729 -9.4750 -0.6411 20 6 -0.8506 -10.9068 1.1845 21 6 -0.0716 -12.1071 0.6428 22 6 -0.7719 -13.3811 1.0399 23 6 -0.4466 -14.0070 2.2287 24 6 -1.0924 -15.1730 2.5952 25 6 -2.0560 -15.7187 1.7680 26 6 -2.3777 -15.0957 0.5767 27 6 -1.7353 -13.9271 0.2124 28 6 -0.4032 -3.5157 1.5747 29 6 0.2264 -2.3606 1.2175 30 1 -0.4849 0.8400 0.0004 31 1 2.6863 -3.6895 -0.7469 32 1 1.5405 -5.7499 -0.1059 33 1 0.6086 -7.2155 0.4578 34 1 -0.8227 -8.5254 2.5105 35 1 -1.8832 -8.3860 1.0879 36 1 -1.0652 -9.4378 -1.0119 37 1 -0.9032 -10.9684 2.2715 38 1 -1.8591 -10.9116 0.7710 39 1 -0.0189 -12.0455 -0.4441 40 1 0.9369 -12.1024 1.0563 41 1 0.3098 -13.5832 2.8728 42 1 -0.8408 -15.6600 3.5258 43 1 -2.5575 -16.6320 2.0522 44 1 -3.1303 -15.5222 -0.0699 45 1 -1.9863 -13.4405 -0.7185 46 1 -1.2667 -3.4809 2.2224 47 1 -0.1378 -1.4112 1.5814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273236381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:03 Heat of formation + Delta-G solvation = -68.234511 kcal Electronic energy + Delta-G solvation = -26898.200611 eV Core-core repulsion = 23009.181218 eV Total energy + Delta-G solvation = -3889.019393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.74509 -39.21076 -37.98205 -36.96304 -34.19005 -33.91013 -33.78699 -31.20236 -30.91482 -30.08552 -29.51779 -27.82387 -25.83649 -24.04247 -22.88953 -21.99402 -21.77435 -21.16327 -20.73720 -19.53131 -17.54433 -17.26067 -17.04411 -16.46555 -16.28543 -15.57089 -15.39704 -15.30138 -15.13912 -14.33004 -14.16476 -13.95936 -13.74502 -13.72990 -13.39795 -13.25574 -13.20356 -12.88178 -12.67138 -12.25053 -12.22501 -12.18410 -11.83256 -11.53187 -11.39569 -11.35225 -11.21111 -11.07260 -11.02734 -10.96176 -10.62088 -10.25447 -10.05441 -9.52790 -9.31573 -9.24104 -9.04691 -8.92063 -8.61583 -7.68280 -7.54938 -7.00920 -4.58772 1.03617 1.08114 2.24989 2.91220 2.96196 3.01949 3.04957 3.43779 3.67816 3.75288 3.88420 4.26792 4.38177 4.50348 4.58077 4.60836 4.69737 4.77763 4.80075 4.98153 5.08503 5.19173 5.24801 5.28632 5.43911 5.55065 5.59856 5.67758 5.71041 5.74844 5.90124 5.97341 6.01156 6.13496 6.15136 6.19884 6.30578 6.34010 6.69443 6.81735 6.84979 6.94256 7.08055 7.11951 7.44537 7.45523 7.63615 7.79905 7.89324 8.07015 8.26843 8.44476 8.64418 8.77013 9.08228 9.91169 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.038564 B = 0.001539 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.897033 B =18190.882733 C =18445.869698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.128 3.872 10 C -0.235 4.235 11 C -0.048 4.048 12 C -0.284 4.284 13 C 0.570 3.430 14 O -0.576 6.576 15 N -0.738 5.738 16 C 0.092 3.908 17 C 0.096 3.904 18 H 0.105 0.895 19 O -0.556 6.556 20 C -0.142 4.142 21 C -0.077 4.077 22 C -0.079 4.079 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.036 4.036 29 C -0.183 4.183 30 H 0.287 0.713 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.376 0.624 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.100 0.900 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 -23.287 0.577 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.254 4.254 11 C -0.067 4.067 12 C -0.289 4.289 13 C 0.365 3.635 14 O -0.459 6.459 15 N -0.391 5.391 16 C -0.033 4.033 17 C 0.037 3.963 18 H 0.123 0.877 19 O -0.362 6.362 20 C -0.180 4.180 21 C -0.115 4.115 22 C -0.079 4.079 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.055 4.055 29 C -0.202 4.202 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.224 0.776 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.118 0.882 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.547 -23.114 1.156 23.195 hybrid contribution -0.047 0.622 -0.327 0.704 sum -1.594 -22.492 0.829 22.564 Atomic orbital electron populations 1.69753 1.07932 1.30093 1.31483 1.26106 0.94794 1.01891 0.91962 0.86220 0.80832 0.80019 0.79343 1.19256 1.19720 1.18098 1.19833 0.98340 0.91228 1.37696 0.89745 1.17794 0.90448 0.92128 0.87162 1.20667 1.04364 0.92814 1.07576 1.20382 0.94240 0.96612 0.95486 1.18903 1.04113 0.91790 1.14049 1.18622 0.82863 0.83430 0.78575 1.90636 1.28558 1.87616 1.39041 1.45796 1.34440 1.05278 1.53634 1.21868 0.96778 0.84528 1.00099 1.22213 1.00768 0.92104 0.81263 0.87719 1.86585 1.33654 1.96154 1.19796 1.22204 0.99783 0.93767 1.02226 1.20559 0.98389 0.90393 1.02139 1.19974 0.96743 0.96531 0.94657 1.21101 1.00257 0.95847 0.96470 1.21161 0.96682 0.96232 0.99623 1.21150 0.98317 1.00171 0.94986 1.21164 0.99796 0.95865 0.96889 1.21096 0.96564 0.96178 0.99754 1.20475 0.97075 0.91563 0.96437 1.20999 1.00052 0.96972 1.02164 0.90185 0.88475 0.89168 0.76338 0.91298 0.91902 0.77623 0.90515 0.91088 0.90113 0.90849 0.86059 0.86162 0.86277 0.86167 0.86054 0.88232 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.93 10.97 55.56 0.61 -18.32 16 2 C 0.07 1.75 5.13 -17.31 -0.09 1.66 16 3 Si 0.91 17.44 29.60 -169.99 -5.03 12.41 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.44 -11.08 9.04 -37.75 -0.34 -11.42 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.28 5.57 -106.80 -0.60 2.69 16 10 C -0.23 -5.48 9.73 -39.27 -0.38 -5.86 16 11 C -0.05 -1.04 9.47 -39.61 -0.38 -1.41 16 12 C -0.28 -6.57 5.89 -104.73 -0.62 -7.19 16 13 C 0.57 12.22 7.76 -12.42 -0.10 12.12 16 14 O -0.58 -13.97 16.32 5.29 0.09 -13.88 16 15 N -0.74 -12.07 5.40 -61.31 -0.33 -12.40 16 16 C 0.09 1.19 5.34 -4.04 -0.02 1.17 16 17 C 0.10 0.90 3.05 -26.73 -0.08 0.82 16 18 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 19 O -0.56 -5.57 12.62 -35.23 -0.44 -6.01 16 20 C -0.14 -1.09 4.88 -26.73 -0.13 -1.22 16 21 C -0.08 -0.58 5.24 -27.88 -0.15 -0.73 16 22 C -0.08 -0.65 5.13 -104.62 -0.54 -1.18 16 23 C -0.12 -0.95 9.70 -39.59 -0.38 -1.33 16 24 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 25 C -0.13 -0.94 10.05 -39.59 -0.40 -1.33 16 26 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 27 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 28 C -0.04 -0.89 9.52 -39.61 -0.38 -1.27 16 29 C -0.18 -4.71 8.63 -39.27 -0.34 -5.05 16 30 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 31 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.09 1.62 6.37 -52.48 -0.33 1.29 16 33 H 0.40 6.03 6.35 -40.82 -0.26 5.77 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.38 2.82 9.05 45.56 0.41 3.23 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.62 7.77 -51.93 -0.40 0.22 16 40 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 43 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.10 2.44 7.63 -52.49 -0.40 2.03 16 47 H 0.12 3.15 6.17 -52.48 -0.32 2.83 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -30.37 396.85 -11.15 -41.52 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -5.93 Total: 14.14 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -6.09 Total: -23.43 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.28 Total: -30.72 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.36 Total: -19.90 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.37 -11.15 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273236381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.713 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds