Wall clock time and date at job start Tue Mar 31 2020 22:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86803 * 119.99594 * 2 1 4 4 H 1.48503 * 109.47047 * 274.66455 * 3 2 1 5 5 H 1.48497 * 109.47349 * 34.66208 * 3 2 1 6 6 H 1.48498 * 109.46765 * 154.66587 * 3 2 1 7 7 C 1.40223 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00026 * 162.20459 * 7 2 1 9 9 C 1.41114 * 119.99644 * 342.19907 * 7 2 1 10 10 C 1.40893 * 120.09748 * 155.06801 * 9 7 2 11 11 C 1.36315 * 119.88481 * 180.29801 * 10 9 7 12 12 C 1.40014 * 120.10857 * 359.47208 * 11 10 9 13 13 C 1.47642 * 119.89046 * 180.25454 * 12 11 10 14 14 O 1.21591 * 119.99334 * 180.24767 * 13 12 11 15 15 N 1.34771 * 120.00628 * 0.25312 * 13 12 11 16 16 C 1.46505 * 120.00394 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47046 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.47216 * 59.99895 * 17 16 15 19 19 O 1.42899 * 109.47074 * 299.99804 * 17 16 15 20 20 C 1.53000 * 109.46526 * 179.97438 * 17 16 15 21 21 C 1.53005 * 109.46527 * 185.00182 * 20 17 16 22 22 C 1.50703 * 109.46873 * 180.02562 * 21 20 17 23 23 C 1.38228 * 120.00174 * 269.72621 * 22 21 20 24 24 C 1.38234 * 120.00200 * 179.76695 * 23 22 21 25 25 C 1.38230 * 119.99842 * 0.50554 * 24 23 22 26 26 C 1.38234 * 120.00450 * 359.74510 * 25 24 23 27 27 C 1.38237 * 119.99554 * 0.02562 * 26 25 24 28 28 C 1.40007 * 120.20866 * 0.50874 * 12 11 10 29 29 C 1.36315 * 120.10882 * 359.76744 * 28 12 11 30 30 H 0.96989 * 119.99852 * 359.97438 * 1 2 3 31 31 H 1.07993 * 120.05469 * 0.02562 * 10 9 7 32 32 H 1.08009 * 119.94050 * 179.69890 * 11 10 9 33 33 H 0.97006 * 119.99866 * 359.97438 * 15 13 12 34 34 H 1.09000 * 109.46801 * 299.99590 * 16 15 13 35 35 H 1.08997 * 109.47271 * 59.99250 * 16 15 13 36 36 H 0.96700 * 113.99447 * 299.99750 * 19 17 16 37 37 H 1.08998 * 109.47264 * 304.99586 * 20 17 16 38 38 H 1.08997 * 109.47567 * 65.00365 * 20 17 16 39 39 H 1.08998 * 109.46862 * 299.99650 * 21 20 17 40 40 H 1.08991 * 109.47693 * 59.99982 * 21 20 17 41 41 H 1.08006 * 120.00211 * 359.97438 * 23 22 21 42 42 H 1.08003 * 120.00077 * 180.22475 * 24 23 22 43 43 H 1.08003 * 120.00363 * 179.72722 * 25 24 23 44 44 H 1.07997 * 120.00623 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00018 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.94458 * 179.75437 * 28 12 11 47 47 H 1.08003 * 120.05534 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.3893 2.1034 -1.3955 5 1 1.4906 2.6223 0.7962 6 1 3.5838 1.4138 0.5991 7 6 2.0077 -1.2143 -0.0005 8 1 3.0490 -1.2366 -0.2864 9 6 1.3528 -2.4073 0.3725 10 6 1.8232 -3.6488 -0.0991 11 6 1.1836 -4.7981 0.2591 12 6 0.0676 -4.7470 1.1031 13 6 -0.6181 -5.9952 1.4926 14 8 -1.5901 -5.9526 2.2219 15 7 -0.1667 -7.1816 1.0399 16 6 -0.8475 -8.4201 1.4259 17 6 -0.1399 -9.6134 0.7808 18 1 0.8959 -9.6477 1.1186 19 8 -0.1729 -9.4750 -0.6411 20 6 -0.8506 -10.9068 1.1845 21 6 -0.0716 -12.1071 0.6428 22 6 -0.7719 -13.3811 1.0399 23 6 -0.4466 -14.0070 2.2287 24 6 -1.0924 -15.1730 2.5952 25 6 -2.0560 -15.7187 1.7680 26 6 -2.3777 -15.0957 0.5767 27 6 -1.7353 -13.9271 0.2124 28 6 -0.4032 -3.5157 1.5747 29 6 0.2264 -2.3606 1.2175 30 1 -0.4849 0.8400 0.0004 31 1 2.6863 -3.6895 -0.7469 32 1 1.5405 -5.7499 -0.1059 33 1 0.6086 -7.2155 0.4578 34 1 -0.8227 -8.5254 2.5105 35 1 -1.8832 -8.3860 1.0879 36 1 -1.0652 -9.4378 -1.0119 37 1 -0.9032 -10.9684 2.2715 38 1 -1.8591 -10.9116 0.7710 39 1 -0.0189 -12.0455 -0.4441 40 1 0.9369 -12.1024 1.0563 41 1 0.3098 -13.5832 2.8728 42 1 -0.8408 -15.6600 3.5258 43 1 -2.5575 -16.6320 2.0522 44 1 -3.1303 -15.5222 -0.0699 45 1 -1.9863 -13.4405 -0.7185 46 1 -1.2667 -3.4809 2.2224 47 1 -0.1378 -1.4112 1.5814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273236381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:02 Heat of formation + Delta-G solvation = -85.441766 kcal Electronic energy + Delta-G solvation = -26898.946774 eV Core-core repulsion = 23009.181218 eV Total energy + Delta-G solvation = -3889.765556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86917 -40.21194 -39.16558 -38.52497 -35.69625 -35.23872 -34.77504 -32.17486 -31.73315 -31.62659 -31.12214 -28.91547 -27.42805 -25.01179 -23.56993 -23.42707 -22.80246 -22.50806 -21.73473 -21.13428 -19.36435 -18.68305 -17.61919 -17.51865 -17.21428 -17.03323 -16.57337 -16.14514 -16.05547 -15.73569 -15.54288 -15.31645 -15.08578 -14.77209 -14.38222 -14.31008 -14.04283 -14.03985 -13.96035 -13.63193 -13.54140 -13.33628 -13.15978 -12.86548 -12.79819 -12.64273 -12.35492 -12.08047 -11.96310 -11.81965 -11.74598 -11.62045 -11.36547 -11.11484 -11.10711 -10.67014 -10.07655 -9.79210 -9.56753 -9.54753 -9.40644 -8.79029 -6.48013 0.44332 0.48003 0.52943 1.15543 1.37934 1.42529 1.55197 2.11314 2.18114 2.35252 2.79430 2.90812 3.49178 3.63100 3.69768 3.85041 3.95177 4.09647 4.18898 4.27460 4.28997 4.33511 4.35322 4.38908 4.41395 4.57378 4.65446 4.69181 4.74776 4.83795 4.91021 4.97487 5.02273 5.14633 5.18480 5.21276 5.26090 5.26364 5.34012 5.55703 5.59510 5.61360 5.66163 5.77690 5.79172 5.96039 6.01962 6.16794 6.20661 6.56076 6.71419 6.76851 6.80367 6.89666 7.44960 8.16353 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.038564 B = 0.001539 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.897033 B =18190.882733 C =18445.869698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.034 3.966 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.472 4.472 8 H 0.092 0.908 9 C 0.100 3.900 10 C -0.246 4.246 11 C -0.037 4.037 12 C -0.295 4.295 13 C 0.569 3.431 14 O -0.610 6.610 15 N -0.718 5.718 16 C 0.089 3.911 17 C 0.112 3.888 18 H 0.112 0.888 19 O -0.566 6.566 20 C -0.132 4.132 21 C -0.070 4.070 22 C -0.090 4.090 23 C -0.132 4.132 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.129 4.129 27 C -0.131 4.131 28 C -0.050 4.050 29 C -0.202 4.202 30 H 0.295 0.705 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.410 0.590 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.387 0.613 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.130 0.870 46 H 0.091 0.909 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -24.676 -0.155 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.185 4.185 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.499 4.499 8 H 0.111 0.889 9 C 0.096 3.904 10 C -0.265 4.265 11 C -0.055 4.055 12 C -0.299 4.299 13 C 0.363 3.637 14 O -0.495 6.495 15 N -0.370 5.370 16 C -0.035 4.035 17 C 0.052 3.948 18 H 0.129 0.871 19 O -0.373 6.373 20 C -0.171 4.171 21 C -0.108 4.108 22 C -0.090 4.090 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.156 4.156 26 C -0.147 4.147 27 C -0.149 4.149 28 C -0.070 4.070 29 C -0.222 4.222 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.237 0.763 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.109 0.891 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.415 -24.556 0.398 24.562 hybrid contribution -0.464 0.916 -0.101 1.032 sum -0.879 -23.640 0.296 23.658 Atomic orbital electron populations 1.69805 1.09564 1.31559 1.31832 1.27026 0.95453 1.05217 0.90785 0.85088 0.79278 0.75139 0.79691 1.18270 1.19149 1.17669 1.20157 0.98901 0.92062 1.38786 0.88949 1.18164 0.90776 0.93732 0.87680 1.20938 1.05136 0.92552 1.07864 1.20691 0.92896 0.97955 0.93998 1.19195 1.04683 0.92064 1.14006 1.18424 0.82419 0.84370 0.78513 1.90617 1.30013 1.88233 1.40679 1.45621 1.34163 1.04948 1.52271 1.22133 0.96888 0.84128 1.00395 1.22084 1.00773 0.91027 0.80884 0.87073 1.86566 1.34859 1.96088 1.19801 1.22104 0.99774 0.92878 1.02312 1.20483 0.98403 0.89903 1.01988 1.20098 0.97091 0.96913 0.94948 1.21329 1.00731 0.96242 0.96736 1.21444 0.96665 0.96268 1.00359 1.21452 0.98336 1.00830 0.94942 1.21446 1.00120 0.95859 0.97308 1.21318 0.96751 0.96601 1.00248 1.20547 0.97084 0.92499 0.96851 1.20921 1.01177 0.96608 1.03458 0.89365 0.86609 0.85007 0.75244 0.91538 0.92151 0.76326 0.90387 0.90781 0.90220 0.90478 0.85160 0.84648 0.84586 0.84647 0.85185 0.89106 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.46 10.97 21.87 0.24 -40.22 16 2 C 0.03 1.61 5.13 85.35 0.44 2.04 16 3 Si 0.99 35.44 29.60 68.60 2.03 37.47 16 4 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 7 C -0.47 -23.84 9.04 23.46 0.21 -23.63 16 8 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 9 C 0.10 5.21 5.57 -21.28 -0.12 5.09 16 10 C -0.25 -11.30 9.73 22.47 0.22 -11.08 16 11 C -0.04 -1.53 9.47 22.25 0.21 -1.32 16 12 C -0.30 -13.63 5.89 -19.93 -0.12 -13.75 16 13 C 0.57 24.08 7.76 86.73 0.67 24.75 16 14 O -0.61 -29.80 16.32 -4.00 -0.07 -29.87 16 15 N -0.72 -22.15 5.40 -466.15 -2.52 -24.67 16 16 C 0.09 2.13 5.34 86.38 0.46 2.59 16 17 C 0.11 1.84 3.05 30.59 0.09 1.93 16 18 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 19 O -0.57 -9.82 12.62 -148.98 -1.88 -11.70 16 20 C -0.13 -1.77 4.88 30.60 0.15 -1.63 16 21 C -0.07 -0.92 5.24 29.85 0.16 -0.76 16 22 C -0.09 -1.35 5.13 -19.86 -0.10 -1.45 16 23 C -0.13 -1.94 9.70 22.27 0.22 -1.72 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.14 -1.81 10.05 22.27 0.22 -1.59 16 26 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 27 C -0.13 -1.91 9.70 22.27 0.22 -1.70 16 28 C -0.05 -2.59 9.52 22.25 0.21 -2.38 16 29 C -0.20 -10.85 8.63 22.47 0.19 -10.66 16 30 H 0.30 13.30 8.29 -92.72 -0.77 12.53 16 31 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.13 4.29 6.37 -2.91 -0.02 4.27 16 33 H 0.41 11.13 6.35 -92.70 -0.59 10.55 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.39 4.84 9.05 -74.06 -0.67 4.17 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.07 7.77 -2.39 -0.02 1.05 16 40 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 41 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.09 4.69 7.63 -2.91 -0.02 4.67 16 47 H 0.10 5.76 6.17 -2.91 -0.02 5.74 16 Total: -1.00 -66.72 396.85 1.33 -65.39 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -0.26 Total: 41.91 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 3.78 Total: -38.32 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -2.28 Total: -64.89 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -1.95 Total: -41.56 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Total: -66.72 1.33 -65.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273236381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.051 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds