Wall clock time and date at job start Tue Mar 31 2020 22:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86808 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47067 * 270.00332 * 3 2 1 5 5 H 1.48496 * 109.47057 * 30.00248 * 3 2 1 6 6 H 1.48495 * 109.46967 * 150.00130 * 3 2 1 7 7 C 1.40227 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00234 * 197.86852 * 7 2 1 9 9 C 1.41111 * 119.99666 * 17.85883 * 7 2 1 10 10 C 1.40881 * 120.10382 * 204.62970 * 9 7 2 11 11 C 1.36319 * 119.89113 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.11074 * 0.03354 * 11 10 9 13 13 C 1.47633 * 119.90145 * 179.97438 * 12 11 10 14 14 O 1.21592 * 119.99504 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00536 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00063 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46927 * 179.97438 * 16 15 13 18 18 H 1.08998 * 109.47528 * 305.00609 * 17 16 15 19 19 O 1.42902 * 109.47082 * 64.99931 * 17 16 15 20 20 C 1.52996 * 109.47216 * 184.99569 * 17 16 15 21 21 C 1.53005 * 109.47304 * 175.00096 * 20 17 16 22 22 C 1.50696 * 109.47259 * 180.02562 * 21 20 17 23 23 C 1.38242 * 119.99808 * 269.72743 * 22 21 20 24 24 C 1.38235 * 119.99647 * 179.76636 * 23 22 21 25 25 C 1.38233 * 119.99948 * 0.50430 * 24 23 22 26 26 C 1.38237 * 120.00121 * 359.75022 * 25 24 23 27 27 C 1.38233 * 120.00098 * 0.02562 * 26 25 24 28 28 C 1.40016 * 120.20458 * 0.24363 * 12 11 10 29 29 C 1.36324 * 120.10872 * 359.44826 * 28 12 11 30 30 H 0.96998 * 120.00197 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.05430 * 0.02562 * 10 9 7 32 32 H 1.08008 * 119.94473 * 180.02562 * 11 10 9 33 33 H 0.96999 * 119.99228 * 359.97438 * 15 13 12 34 34 H 1.08994 * 109.47256 * 299.99806 * 16 15 13 35 35 H 1.08998 * 109.47160 * 60.00129 * 16 15 13 36 36 H 0.96709 * 114.00066 * 59.99878 * 19 17 16 37 37 H 1.08998 * 109.47486 * 295.00656 * 20 17 16 38 38 H 1.09004 * 109.46761 * 55.00848 * 20 17 16 39 39 H 1.09006 * 109.47117 * 300.00435 * 21 20 17 40 40 H 1.08996 * 109.46709 * 60.00332 * 21 20 17 41 41 H 1.07995 * 119.99883 * 0.02562 * 23 22 21 42 42 H 1.08001 * 119.99725 * 180.23059 * 24 23 22 43 43 H 1.08002 * 119.99504 * 179.72449 * 25 24 23 44 44 H 1.08001 * 119.99631 * 179.97438 * 26 25 24 45 45 H 1.07992 * 119.99873 * 179.97438 * 27 26 25 46 46 H 1.07997 * 119.94859 * 179.72691 * 28 12 11 47 47 H 1.07996 * 120.05750 * 180.25468 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4379 2.6527 0.7001 6 1 3.5379 1.4402 0.7000 7 6 2.0076 -1.2143 -0.0005 8 1 3.0485 -1.2370 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8268 -3.6494 0.0892 11 6 1.1915 -4.7987 -0.2765 12 6 0.0704 -4.7458 -1.1134 13 6 -0.6138 -5.9934 -1.5071 14 8 -0.2031 -7.0648 -1.1048 15 7 -1.6935 -5.9448 -2.3122 16 6 -2.3727 -7.1829 -2.7023 17 6 -3.5578 -6.8499 -3.6109 18 1 -4.2106 -6.1354 -3.1095 19 8 -3.0776 -6.2815 -4.8310 20 6 -4.3405 -8.1283 -3.9173 21 6 -5.5941 -7.7784 -4.7217 22 6 -6.3654 -9.0375 -5.0230 23 6 -6.1072 -9.7456 -6.1818 24 6 -6.8113 -10.9032 -6.4557 25 6 -7.7808 -11.3470 -5.5760 26 6 -8.0427 -10.6360 -4.4198 27 6 -7.3353 -9.4809 -4.1435 28 6 -0.4006 -3.5136 -1.5829 29 6 0.2243 -2.3584 -1.2175 30 1 -0.4850 0.8400 -0.0004 31 1 2.6919 -3.6913 0.7345 32 1 1.5537 -5.7518 0.0799 33 1 -2.0213 -5.0900 -2.6328 34 1 -1.6747 -7.8274 -3.2365 35 1 -2.7320 -7.6966 -1.8107 36 1 -2.4892 -6.8634 -5.3312 37 1 -3.7149 -8.8074 -4.4965 38 1 -4.6308 -8.6092 -2.9831 39 1 -6.2197 -7.0992 -4.1425 40 1 -5.3038 -7.2975 -5.6558 41 1 -5.3524 -9.3967 -6.8710 42 1 -6.6070 -11.4585 -7.3593 43 1 -8.3340 -12.2490 -5.7923 44 1 -8.8005 -10.9826 -3.7327 45 1 -7.5402 -8.9253 -3.2405 46 1 -1.2631 -3.4779 -2.2318 47 1 -0.1422 -1.4082 -1.5768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273236383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:07 Heat of formation + Delta-G solvation = -68.564495 kcal Electronic energy + Delta-G solvation = -26967.011112 eV Core-core repulsion = 23077.977409 eV Total energy + Delta-G solvation = -3889.033702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.73313 -39.20369 -37.97562 -36.96991 -34.17125 -33.87233 -33.84479 -31.19249 -30.95050 -30.09287 -29.43337 -27.84807 -25.83906 -24.05183 -22.87875 -21.98865 -21.71651 -21.11588 -20.85398 -19.50734 -17.53296 -17.26183 -17.03507 -16.43150 -16.23781 -15.56631 -15.49661 -15.37570 -15.00611 -14.33578 -14.16784 -13.96145 -13.73616 -13.72025 -13.38718 -13.24770 -13.19996 -12.86622 -12.72595 -12.27750 -12.18586 -12.06234 -11.88791 -11.52046 -11.38388 -11.34171 -11.28185 -11.05754 -11.00969 -10.94787 -10.64801 -10.23966 -10.03464 -9.55268 -9.34960 -9.23090 -9.03508 -8.91007 -8.60954 -7.71207 -7.53792 -7.03115 -4.59893 1.04643 1.09146 2.23730 2.92184 2.96249 2.98542 3.04594 3.44919 3.69796 3.74396 3.87189 4.26415 4.39857 4.51580 4.57026 4.61744 4.70758 4.79359 4.81253 4.99693 5.09944 5.20252 5.26177 5.29550 5.45528 5.55474 5.59775 5.68253 5.72064 5.75998 5.91512 5.98359 6.06977 6.13472 6.16162 6.20830 6.32422 6.35258 6.70484 6.77668 6.83323 6.92408 7.06070 7.14265 7.44365 7.46119 7.66131 7.80217 7.86848 8.07751 8.25353 8.40696 8.63662 8.76015 9.07870 9.88941 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.001655 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.766058 B =16909.676867 C =17560.640954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.285 4.285 13 C 0.571 3.429 14 O -0.579 6.579 15 N -0.737 5.737 16 C 0.093 3.907 17 C 0.095 3.905 18 H 0.106 0.894 19 O -0.556 6.556 20 C -0.141 4.141 21 C -0.078 4.078 22 C -0.079 4.079 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.062 4.062 29 C -0.178 4.178 30 H 0.287 0.713 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.401 0.599 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.375 0.625 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.090 0.910 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.276 -12.874 -11.019 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.289 4.289 13 C 0.366 3.634 14 O -0.461 6.461 15 N -0.391 5.391 16 C -0.032 4.032 17 C 0.036 3.964 18 H 0.123 0.877 19 O -0.361 6.361 20 C -0.179 4.179 21 C -0.115 4.115 22 C -0.079 4.079 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.081 4.081 29 C -0.197 4.197 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.237 0.763 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.223 0.777 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.108 0.892 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.574 -12.972 -10.518 22.165 hybrid contribution 0.336 0.559 -0.224 0.690 sum -14.238 -12.412 -10.742 21.729 Atomic orbital electron populations 1.69741 1.07918 1.30055 1.31757 1.26099 0.94808 1.01882 0.91900 0.86204 0.80575 0.79817 0.79649 1.18926 1.20027 1.18281 1.19858 0.98439 0.91202 1.37557 0.89697 1.17798 0.90394 0.92178 0.87145 1.20712 1.04621 0.92643 1.07889 1.20360 0.92935 0.97126 0.93724 1.18892 1.04546 0.91049 1.14447 1.18608 0.78659 0.89627 0.76521 1.90629 1.66639 1.31747 1.57112 1.45802 1.31781 1.08906 1.52577 1.21873 0.94134 0.88390 0.98788 1.22220 0.93828 0.95315 0.85031 0.87657 1.86601 1.68199 1.46364 1.34977 1.22202 0.96729 0.97731 1.01278 1.20563 0.95372 0.94059 1.01518 1.19977 0.96435 0.96929 0.94554 1.21091 0.99958 0.95462 0.97080 1.21161 0.96456 0.96612 0.99506 1.21150 0.98480 1.00053 0.94951 1.21164 0.99743 0.95458 0.97330 1.21104 0.96310 0.96850 0.99383 1.20494 0.97405 0.92561 0.97640 1.20978 0.99922 0.96917 1.01902 0.90223 0.88393 0.88156 0.76294 0.91882 0.91315 0.77719 0.91107 0.90516 0.90825 0.90106 0.86066 0.86180 0.86283 0.86159 0.86043 0.89238 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.53 10.95 55.56 0.61 -17.92 16 2 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 3 Si 0.91 17.31 29.60 -169.99 -5.03 12.27 16 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.44 -11.06 9.04 -37.75 -0.34 -11.40 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 9 C 0.13 3.28 5.58 -106.80 -0.60 2.69 16 10 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 11 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 12 C -0.28 -6.58 5.89 -104.73 -0.62 -7.20 16 13 C 0.57 12.23 7.76 -12.43 -0.10 12.14 16 14 O -0.58 -13.87 16.32 5.28 0.09 -13.78 16 15 N -0.74 -12.28 5.45 -61.32 -0.33 -12.62 16 16 C 0.09 1.22 5.31 -4.04 -0.02 1.20 16 17 C 0.10 0.93 3.00 -26.73 -0.08 0.85 16 18 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 19 O -0.56 -5.70 12.82 -35.23 -0.45 -6.15 16 20 C -0.14 -1.12 4.88 -26.73 -0.13 -1.25 16 21 C -0.08 -0.60 5.24 -27.88 -0.15 -0.75 16 22 C -0.08 -0.66 5.13 -104.62 -0.54 -1.20 16 23 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 24 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 26 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 27 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 28 C -0.06 -1.39 9.47 -39.60 -0.38 -1.76 16 29 C -0.18 -4.39 8.64 -39.27 -0.34 -4.73 16 30 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 31 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 32 H 0.10 2.31 7.63 -52.48 -0.40 1.91 16 33 H 0.40 6.25 6.47 -40.82 -0.26 5.99 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.38 2.80 9.05 45.56 0.41 3.22 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.08 0.64 7.76 -51.93 -0.40 0.24 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.09 1.73 6.37 -52.49 -0.33 1.39 16 47 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -30.06 397.13 -11.16 -41.22 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -5.93 Total: 14.52 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -6.09 Total: -23.53 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.27 Total: -30.54 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.37 Total: -19.93 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.06 -11.16 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273236383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.341 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds