Wall clock time and date at job start Tue Mar 31 2020 22:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86808 * 119.99881 * 2 1 4 4 H 1.48498 * 109.47067 * 270.00332 * 3 2 1 5 5 H 1.48496 * 109.47057 * 30.00248 * 3 2 1 6 6 H 1.48495 * 109.46967 * 150.00130 * 3 2 1 7 7 C 1.40227 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00234 * 197.86852 * 7 2 1 9 9 C 1.41111 * 119.99666 * 17.85883 * 7 2 1 10 10 C 1.40881 * 120.10382 * 204.62970 * 9 7 2 11 11 C 1.36319 * 119.89113 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.11074 * 0.03354 * 11 10 9 13 13 C 1.47633 * 119.90145 * 179.97438 * 12 11 10 14 14 O 1.21592 * 119.99504 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00536 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00063 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46927 * 179.97438 * 16 15 13 18 18 H 1.08998 * 109.47528 * 305.00609 * 17 16 15 19 19 O 1.42902 * 109.47082 * 64.99931 * 17 16 15 20 20 C 1.52996 * 109.47216 * 184.99569 * 17 16 15 21 21 C 1.53005 * 109.47304 * 175.00096 * 20 17 16 22 22 C 1.50696 * 109.47259 * 180.02562 * 21 20 17 23 23 C 1.38242 * 119.99808 * 269.72743 * 22 21 20 24 24 C 1.38235 * 119.99647 * 179.76636 * 23 22 21 25 25 C 1.38233 * 119.99948 * 0.50430 * 24 23 22 26 26 C 1.38237 * 120.00121 * 359.75022 * 25 24 23 27 27 C 1.38233 * 120.00098 * 0.02562 * 26 25 24 28 28 C 1.40016 * 120.20458 * 0.24363 * 12 11 10 29 29 C 1.36324 * 120.10872 * 359.44826 * 28 12 11 30 30 H 0.96998 * 120.00197 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.05430 * 0.02562 * 10 9 7 32 32 H 1.08008 * 119.94473 * 180.02562 * 11 10 9 33 33 H 0.96999 * 119.99228 * 359.97438 * 15 13 12 34 34 H 1.08994 * 109.47256 * 299.99806 * 16 15 13 35 35 H 1.08998 * 109.47160 * 60.00129 * 16 15 13 36 36 H 0.96709 * 114.00066 * 59.99878 * 19 17 16 37 37 H 1.08998 * 109.47486 * 295.00656 * 20 17 16 38 38 H 1.09004 * 109.46761 * 55.00848 * 20 17 16 39 39 H 1.09006 * 109.47117 * 300.00435 * 21 20 17 40 40 H 1.08996 * 109.46709 * 60.00332 * 21 20 17 41 41 H 1.07995 * 119.99883 * 0.02562 * 23 22 21 42 42 H 1.08001 * 119.99725 * 180.23059 * 24 23 22 43 43 H 1.08002 * 119.99504 * 179.72449 * 25 24 23 44 44 H 1.08001 * 119.99631 * 179.97438 * 26 25 24 45 45 H 1.07992 * 119.99873 * 179.97438 * 27 26 25 46 46 H 1.07997 * 119.94859 * 179.72691 * 28 12 11 47 47 H 1.07996 * 120.05750 * 180.25468 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4379 2.6527 0.7001 6 1 3.5379 1.4402 0.7000 7 6 2.0076 -1.2143 -0.0005 8 1 3.0485 -1.2370 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8268 -3.6494 0.0892 11 6 1.1915 -4.7987 -0.2765 12 6 0.0704 -4.7458 -1.1134 13 6 -0.6138 -5.9934 -1.5071 14 8 -0.2031 -7.0648 -1.1048 15 7 -1.6935 -5.9448 -2.3122 16 6 -2.3727 -7.1829 -2.7023 17 6 -3.5578 -6.8499 -3.6109 18 1 -4.2106 -6.1354 -3.1095 19 8 -3.0776 -6.2815 -4.8310 20 6 -4.3405 -8.1283 -3.9173 21 6 -5.5941 -7.7784 -4.7217 22 6 -6.3654 -9.0375 -5.0230 23 6 -6.1072 -9.7456 -6.1818 24 6 -6.8113 -10.9032 -6.4557 25 6 -7.7808 -11.3470 -5.5760 26 6 -8.0427 -10.6360 -4.4198 27 6 -7.3353 -9.4809 -4.1435 28 6 -0.4006 -3.5136 -1.5829 29 6 0.2243 -2.3584 -1.2175 30 1 -0.4850 0.8400 -0.0004 31 1 2.6919 -3.6913 0.7345 32 1 1.5537 -5.7518 0.0799 33 1 -2.0213 -5.0900 -2.6328 34 1 -1.6747 -7.8274 -3.2365 35 1 -2.7320 -7.6966 -1.8107 36 1 -2.4892 -6.8634 -5.3312 37 1 -3.7149 -8.8074 -4.4965 38 1 -4.6308 -8.6092 -2.9831 39 1 -6.2197 -7.0992 -4.1425 40 1 -5.3038 -7.2975 -5.6558 41 1 -5.3524 -9.3967 -6.8710 42 1 -6.6070 -11.4585 -7.3593 43 1 -8.3340 -12.2490 -5.7923 44 1 -8.8005 -10.9826 -3.7327 45 1 -7.5402 -8.9253 -3.2405 46 1 -1.2631 -3.4779 -2.2318 47 1 -0.1422 -1.4082 -1.5768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273236383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:06 Heat of formation + Delta-G solvation = -85.283357 kcal Electronic energy + Delta-G solvation = -26967.736096 eV Core-core repulsion = 23077.977409 eV Total energy + Delta-G solvation = -3889.758686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.86825 -40.21666 -39.16915 -38.53253 -35.67035 -35.27830 -34.78506 -32.29266 -31.73637 -31.36296 -31.24673 -28.93907 -27.42990 -25.03874 -23.47051 -23.42939 -22.87445 -22.55561 -21.75246 -21.10190 -19.36869 -18.66577 -17.62177 -17.43715 -17.29735 -17.14566 -16.47695 -16.14771 -16.06296 -15.74578 -15.54786 -15.32951 -15.07682 -14.78329 -14.43050 -14.31057 -14.05960 -14.03273 -13.86637 -13.65825 -13.55140 -13.35464 -13.13895 -12.87617 -12.84588 -12.61530 -12.37397 -12.08580 -11.96862 -11.80237 -11.74997 -11.62785 -11.36948 -11.15908 -11.08621 -10.65894 -10.07933 -9.79496 -9.57516 -9.55132 -9.40732 -8.79358 -6.48436 0.43917 0.47633 0.52676 1.14913 1.39241 1.43973 1.53831 2.12435 2.17912 2.35887 2.78531 2.90471 3.47202 3.62348 3.69276 3.84267 3.94522 4.09343 4.18552 4.27136 4.27337 4.32186 4.34769 4.37569 4.44426 4.56572 4.64882 4.68795 4.73661 4.83231 4.90145 4.92513 5.03160 5.13987 5.15883 5.17958 5.25552 5.29957 5.33081 5.55059 5.59796 5.61076 5.65845 5.77331 5.82214 5.94453 5.99539 6.16443 6.22574 6.53976 6.69213 6.77052 6.80637 6.88900 7.43714 8.15965 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.001655 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.766058 B =16909.676867 C =17560.640954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.473 4.473 8 H 0.085 0.915 9 C 0.100 3.900 10 C -0.253 4.253 11 C -0.033 4.033 12 C -0.295 4.295 13 C 0.570 3.430 14 O -0.608 6.608 15 N -0.720 5.720 16 C 0.090 3.910 17 C 0.111 3.889 18 H 0.108 0.892 19 O -0.567 6.567 20 C -0.131 4.131 21 C -0.071 4.071 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.133 4.133 28 C -0.053 4.053 29 C -0.198 4.198 30 H 0.297 0.703 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.408 0.592 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.388 0.612 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 -12.653 -12.092 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.501 4.501 8 H 0.104 0.896 9 C 0.097 3.903 10 C -0.272 4.272 11 C -0.052 4.052 12 C -0.300 4.300 13 C 0.364 3.636 14 O -0.493 6.493 15 N -0.372 5.372 16 C -0.034 4.034 17 C 0.051 3.949 18 H 0.125 0.875 19 O -0.374 6.374 20 C -0.170 4.170 21 C -0.108 4.108 22 C -0.091 4.091 23 C -0.148 4.148 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.147 4.147 27 C -0.151 4.151 28 C -0.072 4.072 29 C -0.217 4.217 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.245 0.755 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.147 0.853 46 H 0.139 0.861 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.685 -12.766 -11.620 23.325 hybrid contribution 0.593 0.386 0.078 0.712 sum -15.092 -12.380 -11.542 22.677 Atomic orbital electron populations 1.69759 1.09256 1.31655 1.31467 1.26933 0.95546 1.04841 0.90800 0.85096 0.79088 0.75170 0.79830 1.18332 1.18908 1.18100 1.20124 0.98777 0.92225 1.38926 0.89645 1.18152 0.91278 0.92917 0.87925 1.20855 1.05207 0.92733 1.08455 1.20513 0.93509 0.97042 0.94166 1.19198 1.04448 0.92270 1.14052 1.18400 0.79647 0.88443 0.77140 1.90610 1.67808 1.32380 1.58509 1.45680 1.30182 1.10677 1.50680 1.22139 0.95086 0.86757 0.99437 1.22078 0.92337 0.96198 0.84281 0.87451 1.86581 1.68624 1.47200 1.34975 1.22096 0.96650 0.96722 1.01487 1.20486 0.95083 0.93919 1.01353 1.20089 0.96822 0.97241 0.94919 1.21315 1.00430 0.95783 0.97301 1.21450 0.96351 0.96665 1.00213 1.21456 0.98557 1.00680 0.94823 1.21442 1.00066 0.95399 0.97832 1.21319 0.96580 0.97342 0.99836 1.20722 0.97751 0.91557 0.97175 1.21009 1.00540 0.97386 1.02746 0.89153 0.87760 0.87926 0.75472 0.91806 0.91549 0.76275 0.90533 0.90429 0.90699 0.90197 0.85117 0.84559 0.84538 0.84675 0.85305 0.86066 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.26 10.95 21.87 0.24 -38.02 16 2 C 0.04 1.76 5.14 85.35 0.44 2.20 16 3 Si 0.99 34.84 29.60 68.60 2.03 36.87 16 4 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 5 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 6 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 7 C -0.47 -24.03 9.04 23.46 0.21 -23.81 16 8 H 0.09 4.16 7.91 -2.92 -0.02 4.14 16 9 C 0.10 5.27 5.58 -21.28 -0.12 5.15 16 10 C -0.25 -12.68 9.73 22.47 0.22 -12.46 16 11 C -0.03 -1.61 9.52 22.25 0.21 -1.40 16 12 C -0.30 -13.64 5.89 -19.94 -0.12 -13.76 16 13 C 0.57 24.09 7.76 86.72 0.67 24.77 16 14 O -0.61 -29.03 16.32 -4.01 -0.07 -29.09 16 15 N -0.72 -22.94 5.45 -466.17 -2.54 -25.48 16 16 C 0.09 2.21 5.31 86.38 0.46 2.66 16 17 C 0.11 1.93 3.00 30.59 0.09 2.02 16 18 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 19 O -0.57 -10.34 12.82 -148.98 -1.91 -12.25 16 20 C -0.13 -1.84 4.88 30.59 0.15 -1.69 16 21 C -0.07 -0.99 5.24 29.85 0.16 -0.83 16 22 C -0.09 -1.40 5.13 -19.87 -0.10 -1.50 16 23 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 24 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.14 -1.83 10.05 22.27 0.22 -1.61 16 26 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 27 C -0.13 -2.02 9.70 22.27 0.22 -1.81 16 28 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 29 C -0.20 -9.86 8.64 22.47 0.19 -9.66 16 30 H 0.30 12.64 8.29 -92.71 -0.77 11.87 16 31 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 33 H 0.41 11.89 6.47 -92.71 -0.60 11.29 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.39 4.92 9.05 -74.05 -0.67 4.25 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.07 1.01 8.09 -2.38 -0.02 1.00 16 40 H 0.08 1.13 7.76 -2.39 -0.02 1.11 16 41 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 44 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.12 4.48 6.37 -2.91 -0.02 4.46 16 47 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -64.68 397.13 1.26 -63.42 By element: Atomic # 1 Polarization: 43.54 SS G_CDS: -0.28 Total: 43.27 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.78 Total: -38.71 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -2.30 Total: -63.51 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.98 Total: -41.34 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -64.68 1.26 -63.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273236383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.860 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds