Wall clock time and date at job start Tue Mar 31 2020 22:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47354 * 2 1 4 4 C 1.46500 * 119.99931 * 270.00158 * 3 2 1 5 5 C 1.50698 * 109.46904 * 269.99827 * 4 3 2 6 6 H 1.07994 * 120.00162 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99683 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00312 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99674 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47203 * 60.00381 * 9 7 5 11 11 H 1.48503 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47320 * 300.00081 * 9 7 5 13 13 C 1.34771 * 119.99896 * 89.99587 * 3 2 1 14 14 O 1.21286 * 120.00307 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00268 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47220 * 172.53527 * 15 13 3 17 17 C 1.46947 * 110.99458 * 305.81367 * 16 15 13 18 18 C 1.53366 * 109.79583 * 307.27129 * 17 16 15 19 19 N 1.46814 * 108.20200 * 309.80303 * 18 17 16 20 20 C 1.35719 * 128.04994 * 196.58894 * 19 18 17 21 21 Cl 1.73600 * 125.92760 * 359.79754 * 20 19 18 22 22 C 1.35185 * 108.14931 * 179.76955 * 20 19 18 23 23 C 1.41140 * 107.48744 * 0.06813 * 22 20 19 24 24 C 1.34087 * 107.33806 * 0.04619 * 23 22 20 25 25 C 1.47355 * 110.99869 * 181.64906 * 16 15 13 26 26 H 1.09002 * 109.79621 * 193.54922 * 25 16 15 27 27 C 1.53000 * 109.75283 * 314.27045 * 25 16 15 28 28 H 1.09004 * 109.47737 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47757 * 300.00230 * 1 2 3 30 30 H 1.09000 * 109.47521 * 59.99908 * 1 2 3 31 31 H 1.08998 * 109.47023 * 239.99804 * 2 1 3 32 32 H 1.09003 * 109.46650 * 120.00337 * 2 1 3 33 33 H 1.08997 * 109.46912 * 29.99970 * 4 3 2 34 34 H 1.09000 * 109.47097 * 149.99892 * 4 3 2 35 35 H 0.96997 * 120.00111 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46990 * 52.53569 * 15 13 3 37 37 H 1.08999 * 109.47180 * 292.53720 * 15 13 3 38 38 H 1.09000 * 109.41384 * 187.17423 * 17 16 15 39 39 H 1.08999 * 109.42039 * 67.37345 * 17 16 15 40 40 H 1.09002 * 109.71431 * 190.13059 * 18 17 16 41 41 H 1.08989 * 109.71630 * 69.47761 * 18 17 16 42 42 H 1.08002 * 126.25822 * 180.02562 * 22 20 19 43 43 H 1.07999 * 126.33210 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.46696 * 178.54768 * 27 25 16 45 45 H 1.08999 * 109.47177 * 298.55021 * 27 25 16 46 46 H 1.08999 * 109.46873 * 58.55690 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3428 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9138 2.0974 -3.4163 10 1 6.1416 0.6408 -3.5943 11 1 6.1613 2.7973 -4.7025 12 1 6.8409 2.6206 -2.3810 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9922 1.3060 2.4723 16 7 2.4765 2.1365 3.5829 17 6 3.8838 2.5108 3.3858 18 6 4.7239 1.2542 3.1261 19 7 4.4168 0.2726 4.1737 20 6 5.1270 -0.8307 4.5204 21 17 6.6068 -1.3623 3.7846 22 6 4.4826 -1.4435 5.5386 23 6 3.3279 -0.6851 5.8274 24 6 3.3102 0.3542 4.9803 25 6 2.2832 1.4552 4.8752 26 1 2.4195 2.1653 5.6909 27 6 0.8760 0.8579 4.9394 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6757 3.5175 -4.4431 36 1 2.5206 0.3526 2.4743 37 1 0.9231 1.1291 2.5902 38 1 4.2530 3.0154 4.2786 39 1 3.9637 3.1831 2.5315 40 1 5.7836 1.5073 3.1586 41 1 4.4738 0.8401 2.1494 42 1 4.7941 -2.3485 6.0390 43 1 2.5941 -0.9019 6.5896 44 1 0.7470 0.3332 5.8860 45 1 0.1384 1.6567 4.8631 46 1 0.7405 0.1581 4.1148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293299037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:00 Heat of formation + Delta-G solvation = 32.596903 kcal Electronic energy + Delta-G solvation = -28958.429048 eV Core-core repulsion = 25103.641935 eV Total energy + Delta-G solvation = -3854.787113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00548 -39.48954 -37.42121 -36.60030 -35.33949 -33.98922 -32.87433 -30.88752 -30.14136 -29.23366 -27.89916 -27.43246 -26.26640 -23.15447 -22.94047 -22.89195 -21.50698 -20.75429 -18.96265 -18.07780 -17.49296 -16.85719 -16.56771 -16.17582 -15.57078 -15.07221 -14.81866 -14.53486 -14.39601 -14.06437 -13.90738 -13.66703 -13.42028 -13.06066 -13.00647 -12.89004 -12.58390 -12.45207 -12.26573 -12.04341 -11.84788 -11.74690 -11.73972 -11.41964 -11.28348 -11.23394 -11.13825 -11.03868 -10.95472 -10.70977 -10.56835 -10.15201 -9.71182 -8.96921 -8.80801 -8.48499 -8.36175 -8.07974 -7.72819 -6.09583 -4.14805 1.69661 1.93667 2.75367 2.82769 3.26418 3.27491 3.32077 3.35870 3.54869 4.05798 4.39317 4.44605 4.63548 4.76790 4.87595 5.03527 5.08711 5.15209 5.18953 5.25127 5.33666 5.37868 5.40048 5.44907 5.57485 5.62556 5.70170 5.72312 5.77045 5.94825 5.98561 6.00975 6.04449 6.14011 6.19491 6.42679 6.63218 6.75798 6.87874 6.97587 7.03267 7.07257 7.39313 7.48192 7.86169 8.17313 8.34467 8.83287 9.01862 9.50477 10.98359 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.004359 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.122226 B = 6421.764485 C = 7820.783903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.054 0.946 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.526 6.526 15 C 0.027 3.973 16 N -0.507 5.507 17 C 0.030 3.970 18 C 0.062 3.938 19 N -0.435 5.435 20 C 0.064 3.936 21 Cl -0.028 7.028 22 C -0.179 4.179 23 C -0.179 4.179 24 C 0.001 3.999 25 C 0.149 3.851 26 H 0.104 0.896 27 C -0.145 4.145 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 -8.931 17.986 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.072 0.928 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.404 6.404 15 C -0.103 4.103 16 N -0.229 5.229 17 C -0.098 4.098 18 C -0.060 4.060 19 N -0.114 5.114 20 C -0.073 4.073 21 Cl 0.000 7.000 22 C -0.205 4.205 23 C -0.203 4.203 24 C -0.112 4.112 25 C 0.040 3.960 26 H 0.122 0.878 27 C -0.202 4.202 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.158 0.842 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.741 -7.561 17.406 19.174 hybrid contribution 1.841 -1.227 -0.600 2.293 sum -0.899 -8.788 16.805 18.986 Atomic orbital electron populations 1.22208 0.96544 1.01505 1.02416 1.21437 0.93747 0.84211 1.02556 1.48274 1.63555 1.13143 1.07694 1.19272 0.96220 0.93669 0.77979 1.21339 0.96840 1.32058 1.06366 0.92768 1.24907 0.97722 0.94884 0.96358 1.69912 1.35685 1.33196 1.14354 0.86607 0.84880 0.78279 0.77942 1.20287 1.21089 1.20216 1.20091 0.78994 0.87056 0.84800 1.90565 1.45406 1.17742 1.86643 1.22274 1.02492 0.95175 0.90378 1.62186 1.18827 1.41359 1.00547 1.22995 0.85225 0.95367 1.06169 1.22853 1.02725 0.90252 0.90197 1.44310 1.18953 1.19738 1.28360 1.20758 0.92057 0.93334 1.01189 1.98377 1.30698 1.88176 1.82728 1.20702 0.97407 1.02687 0.99690 1.20357 1.00273 0.96526 1.03159 1.21312 0.91719 1.01625 0.96574 1.20698 0.92216 0.90388 0.92689 0.87806 1.21933 0.94336 1.01289 1.02661 0.92114 0.93034 0.91891 0.89876 0.92124 0.95017 0.93769 0.92604 0.92432 0.87637 0.90142 0.84167 0.88780 0.89305 0.83900 0.83922 0.91325 0.90837 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.10 1.64 5.95 -4.04 -0.02 1.62 16 3 N -0.59 -11.96 2.46 -175.07 -0.43 -12.39 16 4 C 0.25 6.24 5.16 -5.19 -0.03 6.21 16 5 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 6 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 9 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.50 9.82 6.74 -10.99 -0.07 9.75 16 14 O -0.53 -12.18 13.34 5.55 0.07 -12.11 16 15 C 0.03 0.40 2.77 -4.98 -0.01 0.39 16 16 N -0.51 -7.08 4.77 -228.69 -1.09 -8.17 16 17 C 0.03 0.44 5.34 -3.61 -0.02 0.42 16 18 C 0.06 0.89 6.09 -3.68 -0.02 0.87 16 19 N -0.44 -5.90 2.89 -108.65 -0.31 -6.22 16 20 C 0.06 0.86 7.46 -16.92 -0.13 0.73 16 21 Cl -0.03 -0.36 29.13 -51.86 -1.51 -1.87 16 22 C -0.18 -2.13 10.85 -39.57 -0.43 -2.56 16 23 C -0.18 -1.99 10.27 -39.94 -0.41 -2.40 16 24 C 0.00 0.01 5.45 -81.55 -0.44 -0.43 16 25 C 0.15 1.65 3.22 -68.50 -0.22 1.43 16 26 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 27 C -0.14 -1.28 8.29 37.16 0.31 -0.97 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.63 7.46 -51.93 -0.39 0.24 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.06 0.84 6.24 -51.93 -0.32 0.51 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 0.85 4.92 -51.93 -0.26 0.60 16 37 H 0.11 1.37 5.64 -51.93 -0.29 1.08 16 38 H 0.08 1.04 8.07 -51.93 -0.42 0.63 16 39 H 0.14 2.50 5.38 -51.93 -0.28 2.22 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.46 6.67 -51.94 -0.35 1.12 16 42 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.14 1.24 7.85 -52.49 -0.41 0.83 16 44 H 0.07 0.48 7.75 -51.93 -0.40 0.08 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.58 6.31 -51.93 -0.33 0.26 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -31.00 374.13 -10.21 -41.22 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.75 Total: 2.53 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.54 Total: 0.18 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -1.10 Total: -52.05 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.07 Total: -12.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.00 -10.21 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293299037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.813 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds