Wall clock time and date at job start Tue Mar 31 2020 22:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47354 * 2 1 4 4 C 1.46500 * 119.99931 * 270.00158 * 3 2 1 5 5 C 1.50698 * 109.46904 * 269.99827 * 4 3 2 6 6 H 1.07994 * 120.00162 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99683 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00312 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99674 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47203 * 60.00381 * 9 7 5 11 11 H 1.48503 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47320 * 300.00081 * 9 7 5 13 13 C 1.34771 * 119.99896 * 89.99587 * 3 2 1 14 14 O 1.21286 * 120.00307 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00268 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.47220 * 172.53527 * 15 13 3 17 17 C 1.46947 * 110.99458 * 305.81367 * 16 15 13 18 18 C 1.53366 * 109.79583 * 307.27129 * 17 16 15 19 19 N 1.46814 * 108.20200 * 309.80303 * 18 17 16 20 20 C 1.35719 * 128.04994 * 196.58894 * 19 18 17 21 21 Cl 1.73600 * 125.92760 * 359.79754 * 20 19 18 22 22 C 1.35185 * 108.14931 * 179.76955 * 20 19 18 23 23 C 1.41140 * 107.48744 * 0.06813 * 22 20 19 24 24 C 1.34087 * 107.33806 * 0.04619 * 23 22 20 25 25 C 1.47355 * 110.99869 * 181.64906 * 16 15 13 26 26 H 1.09002 * 109.79621 * 193.54922 * 25 16 15 27 27 C 1.53000 * 109.75283 * 314.27045 * 25 16 15 28 28 H 1.09004 * 109.47737 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47757 * 300.00230 * 1 2 3 30 30 H 1.09000 * 109.47521 * 59.99908 * 1 2 3 31 31 H 1.08998 * 109.47023 * 239.99804 * 2 1 3 32 32 H 1.09003 * 109.46650 * 120.00337 * 2 1 3 33 33 H 1.08997 * 109.46912 * 29.99970 * 4 3 2 34 34 H 1.09000 * 109.47097 * 149.99892 * 4 3 2 35 35 H 0.96997 * 120.00111 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46990 * 52.53569 * 15 13 3 37 37 H 1.08999 * 109.47180 * 292.53720 * 15 13 3 38 38 H 1.09000 * 109.41384 * 187.17423 * 17 16 15 39 39 H 1.08999 * 109.42039 * 67.37345 * 17 16 15 40 40 H 1.09002 * 109.71431 * 190.13059 * 18 17 16 41 41 H 1.08989 * 109.71630 * 69.47761 * 18 17 16 42 42 H 1.08002 * 126.25822 * 180.02562 * 22 20 19 43 43 H 1.07999 * 126.33210 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.46696 * 178.54768 * 27 25 16 45 45 H 1.08999 * 109.47177 * 298.55021 * 27 25 16 46 46 H 1.08999 * 109.46873 * 58.55690 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3428 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6176 9 14 5.9138 2.0974 -3.4163 10 1 6.1416 0.6408 -3.5943 11 1 6.1613 2.7973 -4.7025 12 1 6.8409 2.6206 -2.3810 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9922 1.3060 2.4723 16 7 2.4765 2.1365 3.5829 17 6 3.8838 2.5108 3.3858 18 6 4.7239 1.2542 3.1261 19 7 4.4168 0.2726 4.1737 20 6 5.1270 -0.8307 4.5204 21 17 6.6068 -1.3623 3.7846 22 6 4.4826 -1.4435 5.5386 23 6 3.3279 -0.6851 5.8274 24 6 3.3102 0.3542 4.9803 25 6 2.2832 1.4552 4.8752 26 1 2.4195 2.1653 5.6909 27 6 0.8760 0.8579 4.9394 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6757 3.5175 -4.4431 36 1 2.5206 0.3526 2.4743 37 1 0.9231 1.1291 2.5902 38 1 4.2530 3.0154 4.2786 39 1 3.9637 3.1831 2.5315 40 1 5.7836 1.5073 3.1586 41 1 4.4738 0.8401 2.1494 42 1 4.7941 -2.3485 6.0390 43 1 2.5941 -0.9019 6.5896 44 1 0.7470 0.3332 5.8860 45 1 0.1384 1.6567 4.8631 46 1 0.7405 0.1581 4.1148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293299037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:00 Heat of formation + Delta-G solvation = 13.801960 kcal Electronic energy + Delta-G solvation = -28959.244058 eV Core-core repulsion = 25103.641935 eV Total energy + Delta-G solvation = -3855.602123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.99236 -40.92118 -38.59557 -37.59129 -36.90869 -34.99346 -34.91000 -32.02502 -31.54246 -30.43451 -29.18796 -28.46587 -27.75439 -24.96520 -24.20798 -23.91599 -22.66975 -21.67769 -20.25625 -19.32044 -18.67571 -18.48192 -18.15148 -17.45734 -17.15531 -16.36536 -16.20308 -15.85595 -15.53949 -15.42288 -15.09057 -14.73482 -14.71069 -14.34954 -14.19206 -13.99009 -13.84834 -13.62432 -13.39292 -13.30968 -13.24316 -13.14855 -12.76377 -12.72109 -12.67451 -12.54133 -12.47998 -12.24796 -12.18040 -12.17117 -11.95963 -11.83787 -11.72580 -10.66272 -10.50104 -9.76460 -9.53549 -9.42258 -9.00413 -8.24350 -6.38719 0.75669 0.98483 1.33272 1.35983 1.43469 1.73135 1.83264 1.89086 2.17069 2.36770 2.83835 3.05359 3.40874 3.55805 3.68498 3.69349 3.93304 3.98804 4.15740 4.19343 4.25799 4.32751 4.40943 4.49001 4.51046 4.58961 4.60806 4.86916 4.89519 4.94450 4.97151 5.00214 5.03724 5.14489 5.19056 5.20828 5.32786 5.36347 5.55403 5.68761 5.71759 5.84366 5.92603 6.04507 6.04757 6.09876 6.67738 6.77074 7.26595 7.46666 8.82386 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.004359 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.122226 B = 6421.764485 C = 7820.783903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.601 5.601 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.960 3.040 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.497 3.503 14 O -0.571 6.571 15 C 0.049 3.951 16 N -0.517 5.517 17 C 0.037 3.963 18 C 0.073 3.927 19 N -0.445 5.445 20 C 0.040 3.960 21 Cl -0.034 7.034 22 C -0.175 4.175 23 C -0.170 4.170 24 C -0.008 4.008 25 C 0.151 3.849 26 H 0.117 0.883 27 C -0.141 4.141 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.020 0.980 34 H 0.000 1.000 35 H 0.267 0.733 36 H 0.062 0.938 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.161 0.839 43 H 0.173 0.827 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -11.086 20.446 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.333 5.333 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.784 3.216 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.286 3.714 14 O -0.451 6.451 15 C -0.081 4.081 16 N -0.240 5.240 17 C -0.091 4.091 18 C -0.050 4.050 19 N -0.125 5.125 20 C -0.097 4.097 21 Cl -0.005 7.005 22 C -0.202 4.202 23 C -0.194 4.194 24 C -0.120 4.120 25 C 0.043 3.957 26 H 0.135 0.865 27 C -0.199 4.199 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.018 0.982 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.179 0.821 43 H 0.191 0.809 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.364 -9.767 19.896 22.418 hybrid contribution 2.007 -0.556 -1.300 2.455 sum -1.357 -10.322 18.596 21.312 Atomic orbital electron populations 1.22140 0.94036 1.03587 1.02005 1.21695 0.95761 0.81590 1.03173 1.48268 1.63929 1.14782 1.06336 1.18680 0.95119 0.91616 0.80181 1.21600 0.97787 1.31910 1.06481 0.93253 1.25760 1.01930 0.94527 0.96442 1.70029 1.37641 1.34057 1.14802 0.85589 0.79594 0.78841 0.77538 1.18879 1.20265 1.20274 1.20971 0.77672 0.86730 0.86064 1.90558 1.47120 1.19973 1.87455 1.22098 1.03939 0.94284 0.87766 1.62179 1.18159 1.42039 1.01589 1.22745 0.86157 0.94982 1.05220 1.22550 1.02643 0.90344 0.89493 1.44300 1.19793 1.19809 1.28552 1.21054 0.92525 0.93900 1.02227 1.98370 1.31043 1.88197 1.82912 1.21065 0.97263 1.03013 0.98813 1.20716 1.00265 0.95386 1.03052 1.21636 0.91428 1.02286 0.96660 1.20900 0.93438 0.90369 0.91038 0.86526 1.21959 0.92525 1.01438 1.03971 0.88702 0.91846 0.93905 0.91120 0.89608 0.96152 0.98183 0.92395 0.92039 0.85106 0.88602 0.87867 0.88764 0.92023 0.82099 0.80928 0.88771 0.90401 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.24 71.98 0.74 -3.13 16 2 C 0.10 3.08 5.95 86.38 0.51 3.60 16 3 N -0.60 -24.91 2.46 -826.17 -2.03 -26.94 16 4 C 0.27 14.10 5.16 85.63 0.44 14.54 16 5 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.73 5.46 84.66 0.46 1.19 16 8 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 10 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.50 19.87 6.74 87.66 0.59 20.46 16 14 O -0.57 -27.89 13.34 -3.05 -0.04 -27.93 16 15 C 0.05 1.40 2.77 85.56 0.24 1.63 16 16 N -0.52 -13.84 4.77 -877.44 -4.18 -18.02 16 17 C 0.04 1.11 5.34 86.42 0.46 1.57 16 18 C 0.07 2.12 6.09 86.44 0.53 2.65 16 19 N -0.44 -11.43 2.89 -497.65 -1.44 -12.87 16 20 C 0.04 0.99 7.46 83.39 0.62 1.61 16 21 Cl -0.03 -0.83 29.13 -2.72 -0.08 -0.91 16 22 C -0.18 -3.64 10.85 22.28 0.24 -3.40 16 23 C -0.17 -3.11 10.27 22.04 0.23 -2.88 16 24 C -0.01 -0.17 5.45 40.85 0.22 0.05 16 25 C 0.15 2.89 3.22 44.16 0.14 3.03 16 26 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 27 C -0.14 -1.92 8.29 71.98 0.60 -1.32 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.39 7.46 -2.39 -0.02 1.37 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 32 H 0.09 2.21 6.24 -2.39 -0.01 2.19 16 33 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 34 H 0.00 0.00 7.42 -2.39 -0.02 -0.01 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.06 1.72 4.92 -2.39 -0.01 1.71 16 37 H 0.13 3.04 5.64 -2.39 -0.01 3.02 16 38 H 0.10 2.46 8.07 -2.39 -0.02 2.45 16 39 H 0.10 3.91 5.38 -2.39 -0.01 3.89 16 40 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 41 H 0.06 2.10 6.67 -2.39 -0.02 2.09 16 42 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 43 H 0.17 2.06 7.85 -2.91 -0.02 2.04 16 44 H 0.09 0.83 7.75 -2.39 -0.02 0.81 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 0.86 6.31 -2.39 -0.02 0.84 16 Total: -1.00 -70.78 374.13 1.79 -68.99 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.99 Total: 17.02 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.26 Total: 9.19 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -7.37 Total: -113.18 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.04 Total: -27.93 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -70.78 1.79 -68.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293299037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.792 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds