Wall clock time and date at job start Tue Mar 31 2020 22:21:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46503 * 109.47379 * 2 1
4 4 C 1.46497 * 120.00112 * 270.00185 * 3 2 1
5 5 C 1.50703 * 109.47019 * 269.99547 * 4 3 2
6 6 H 1.08001 * 119.99905 * 359.97438 * 5 4 3
7 7 C 1.37875 * 119.99622 * 179.97438 * 5 4 3
8 8 N 1.31515 * 120.00676 * 0.02562 * 7 5 4
9 9 Si 1.86811 * 119.99645 * 179.97438 * 7 5 4
10 10 H 1.48500 * 109.46717 * 60.00189 * 9 7 5
11 11 H 1.48495 * 109.46920 * 180.02562 * 9 7 5
12 12 H 1.48498 * 109.47117 * 300.00119 * 9 7 5
13 13 C 1.38386 * 119.99929 * 89.99256 * 3 2 1
14 14 N 1.32229 * 118.79321 * 0.02562 * 13 3 2
15 15 C 1.33073 * 120.57408 * 179.97438 * 14 13 3
16 16 C 1.40940 * 118.91205 * 359.97438 * 15 14 13
17 17 C 1.41283 * 106.99894 * 179.97438 * 16 15 14
18 18 N 1.30267 * 108.52273 * 359.75804 * 17 16 15
19 19 N 1.36620 * 134.56089 * 179.97438 * 15 14 13
20 20 C 1.40043 * 125.89069 * 359.97438 * 19 15 14
21 21 C 1.38870 * 120.07424 * 144.99813 * 20 19 15
22 22 C 1.38103 * 119.93388 * 179.97438 * 21 20 19
23 23 C 1.38285 * 120.07042 * 0.02562 * 22 21 20
24 24 C 1.38287 * 120.13989 * 359.97438 * 23 22 21
25 25 C 1.38113 * 120.07216 * 0.02562 * 24 23 22
26 26 C 1.40652 * 118.40912 * 0.02562 * 16 15 14
27 27 O 1.35363 * 120.73261 * 180.02562 * 26 16 15
28 28 N 1.32556 * 118.53247 * 359.97438 * 26 16 15
29 29 H 1.09006 * 109.46974 * 60.00155 * 1 2 3
30 30 H 1.09000 * 109.46727 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47653 * 299.99930 * 1 2 3
32 32 H 1.08998 * 109.47653 * 240.00070 * 2 1 3
33 33 H 1.08997 * 109.47520 * 120.00025 * 2 1 3
34 34 H 1.09001 * 109.47223 * 29.99394 * 4 3 2
35 35 H 1.09007 * 109.47401 * 149.99193 * 4 3 2
36 36 H 0.97000 * 119.99952 * 179.97438 * 8 7 5
37 37 H 1.07994 * 125.73592 * 180.02562 * 17 16 15
38 38 H 1.08001 * 120.03179 * 359.96166 * 21 20 19
39 39 H 1.08000 * 119.96725 * 180.02562 * 22 21 20
40 40 H 1.08003 * 119.93219 * 179.72531 * 23 22 21
41 41 H 1.07997 * 119.96913 * 180.02562 * 24 23 22
42 42 H 1.07994 * 120.03734 * 180.02562 * 25 24 23
43 43 H 0.96700 * 113.99944 * 89.99799 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2625 2.0718 -1.2687
5 6 3.6858 1.8351 -1.7037
6 1 4.3429 1.2309 -1.0957
7 6 4.1491 2.3897 -2.8779
8 7 3.3491 3.1258 -3.6181
9 14 5.9136 2.0968 -3.4168
10 1 6.1418 0.6401 -3.5935
11 1 6.1610 2.7967 -4.7028
12 1 6.8407 2.6211 -2.3820
13 6 2.2489 2.0336 1.1985
14 7 2.0208 1.3875 2.3294
15 6 2.2309 1.9806 3.5020
16 6 2.7013 3.3091 3.5191
17 6 2.8332 3.6832 4.8751
18 7 2.4712 2.6770 5.6190
19 7 2.0961 1.5993 4.8069
20 6 1.6529 0.3488 5.2552
21 6 2.1878 -0.2060 6.4104
22 6 1.7482 -1.4392 6.8502
23 6 0.7768 -2.1217 6.1412
24 6 0.2420 -1.5720 4.9905
25 6 0.6773 -0.3391 4.5454
26 6 2.9289 3.9542 2.2901
27 8 3.3810 5.2296 2.2516
28 7 2.6920 3.2854 1.1705
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8899
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8899
34 1 1.5817 1.6877 -2.0284
35 1 2.0954 3.1411 -1.1384
36 1 3.6752 3.5163 -4.4439
37 1 3.1726 4.6434 5.2343
38 1 2.9470 0.3262 6.9643
39 1 2.1636 -1.8710 7.7488
40 1 0.4378 -3.0879 6.4847
41 1 -0.5169 -2.1072 4.4392
42 1 0.2590 0.0898 3.6469
43 1 4.3449 5.3050 2.2398
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000301497226.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:21:51
Heat of formation + Delta-G solvation = 127.979932 kcal
Electronic energy + Delta-G solvation = -29057.766463 eV
Core-core repulsion = 25106.007974 eV
Total energy + Delta-G solvation = -3951.758489 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.144 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.88355 -39.60761 -38.65374 -37.71610 -35.74415 -33.67145 -32.87128 -32.30660
-31.08018 -30.56312 -29.27525 -29.03310 -26.77695 -24.24379 -23.80871 -23.12544
-23.01785 -22.18576 -20.85648 -20.37024 -18.72806 -18.20895 -17.03446 -16.70507
-16.51777 -16.14713 -15.74742 -15.67106 -15.06997 -14.70769 -14.42662 -14.29801
-14.04655 -13.92220 -13.66653 -13.48674 -13.02232 -12.84853 -12.37697 -12.10153
-11.87509 -11.75294 -11.70340 -11.46511 -11.29412 -11.18970 -10.99195 -10.82441
-10.67482 -10.55077 -10.27316 -10.16948 -9.90594 -9.63969 -9.15282 -9.10062
-8.70940 -8.47569 -8.12377 -7.21480 -6.09882 -4.16208 0.77663 1.13552
1.24891 1.83566 2.07991 2.58288 3.23825 3.26847 3.31692 3.35414
3.62162 3.78394 4.21001 4.36188 4.38936 4.70145 4.79418 4.82842
4.92115 4.98286 5.20269 5.23312 5.24185 5.26472 5.43485 5.52484
5.63322 5.70444 5.80323 5.86729 5.98289 6.17447 6.21384 6.22967
6.32906 6.36366 6.46570 6.58055 6.59486 6.88037 7.01200 7.26785
7.42773 7.49959 7.61472 7.69144 7.84435 8.12917 8.14582 8.74193
8.91600 9.48286 10.96642
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.012586 B = 0.003630 C = 0.003138
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2224.238197 B = 7710.940186 C = 8919.819057
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.124 3.876
3 N -0.542 5.542
4 C 0.253 3.747
5 C -0.527 4.527
6 H 0.056 0.944
7 C 0.065 3.935
8 N -0.892 5.892
9 Si 0.898 3.102
10 H -0.277 1.277
11 H -0.286 1.286
12 H -0.277 1.277
13 C 0.633 3.367
14 N -0.606 5.606
15 C 0.406 3.594
16 C -0.366 4.366
17 C 0.133 3.867
18 N -0.271 5.271
19 N -0.347 5.347
20 C 0.172 3.828
21 C -0.119 4.119
22 C -0.106 4.106
23 C -0.130 4.130
24 C -0.099 4.099
25 C -0.115 4.115
26 C 0.483 3.517
27 O -0.474 6.474
28 N -0.565 5.565
29 H 0.056 0.944
30 H 0.060 0.940
31 H 0.052 0.948
32 H 0.082 0.918
33 H 0.078 0.922
34 H 0.037 0.963
35 H 0.054 0.946
36 H 0.265 0.735
37 H 0.198 0.802
38 H 0.130 0.870
39 H 0.128 0.872
40 H 0.125 0.875
41 H 0.130 0.870
42 H 0.135 0.865
43 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.746 -5.393 17.591 18.776
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.000 4.000
3 N -0.251 5.251
4 C 0.134 3.866
5 C -0.566 4.566
6 H 0.074 0.926
7 C -0.137 4.137
8 N -0.531 5.531
9 Si 0.725 3.275
10 H -0.203 1.203
11 H -0.211 1.211
12 H -0.203 1.203
13 C 0.276 3.724
14 N -0.342 5.342
15 C 0.158 3.842
16 C -0.384 4.384
17 C -0.065 4.065
18 N -0.082 5.082
19 N -0.131 5.131
20 C 0.080 3.920
21 C -0.139 4.139
22 C -0.124 4.124
23 C -0.149 4.149
24 C -0.118 4.118
25 C -0.136 4.136
26 C 0.280 3.720
27 O -0.282 6.282
28 N -0.297 5.297
29 H 0.075 0.925
30 H 0.079 0.921
31 H 0.071 0.929
32 H 0.100 0.900
33 H 0.096 0.904
34 H 0.055 0.945
35 H 0.072 0.928
36 H 0.074 0.926
37 H 0.215 0.785
38 H 0.148 0.852
39 H 0.146 0.854
40 H 0.143 0.857
41 H 0.147 0.853
42 H 0.153 0.847
43 H 0.271 0.729
Dipole moment (debyes) X Y Z Total
from point charges -4.720 -6.221 17.484 19.148
hybrid contribution 1.802 0.671 -0.528 1.994
sum -2.917 -5.550 16.956 18.078
Atomic orbital electron populations
1.22125 0.96582 1.01378 1.02013 1.21389 0.93537 0.82009 1.03051
1.47197 1.62125 1.12834 1.02953 1.19509 0.96565 0.93910 0.76632
1.21334 0.96603 1.32213 1.06426 0.92598 1.24884 0.97761 0.94847
0.96250 1.69913 1.35689 1.33135 1.14327 0.86574 0.84740 0.78325
0.77845 1.20270 1.21127 1.20294 1.18672 0.84715 0.83520 0.85520
1.66949 1.33690 1.38777 0.94820 1.18509 0.90654 0.88869 0.86200
1.19881 1.24757 0.98226 0.95517 1.23709 0.95228 0.97968 0.89548
1.77019 1.19928 0.94216 1.17079 1.45306 1.57057 1.10341 1.00426
1.17420 0.95698 0.82644 0.96211 1.20945 1.00682 0.95876 0.96436
1.20981 0.97332 0.94180 0.99933 1.21191 0.97705 1.00231 0.95780
1.20991 0.99834 0.94632 0.96356 1.21128 0.95592 0.96029 1.00841
1.18566 0.85884 0.82582 0.84995 1.84571 1.28234 1.19770 1.95577
1.67642 1.22958 1.08871 1.30234 0.92477 0.92093 0.92930 0.89963
0.90355 0.94468 0.92840 0.92562 0.78514 0.85217 0.85445 0.85735
0.85258 0.84668 0.72882
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.42 10.24 37.15 0.38 -2.04 16
2 C 0.12 2.17 6.12 -4.04 -0.02 2.15 16
3 N -0.54 -11.55 2.55 -177.40 -0.45 -12.00 16
4 C 0.25 6.28 5.15 -5.19 -0.03 6.25 16
5 C -0.53 -14.21 9.39 -34.44 -0.32 -14.53 16
6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16
7 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16
8 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16
9 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16
10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
13 C 0.63 13.39 8.17 -322.75 -2.64 10.75 16
14 N -0.61 -11.68 8.25 -13.24 -0.11 -11.79 16
15 C 0.41 7.36 7.52 -156.03 -1.17 6.19 16
16 C -0.37 -6.07 6.19 -106.81 -0.66 -6.73 16
17 C 0.13 1.78 12.05 -17.06 -0.21 1.58 16
18 N -0.27 -4.07 12.21 30.83 0.38 -3.69 16
19 N -0.35 -5.69 3.76 -9.92 -0.04 -5.73 16
20 C 0.17 2.54 6.40 -83.63 -0.54 2.00 16
21 C -0.12 -1.48 9.76 -39.40 -0.38 -1.86 16
22 C -0.11 -1.05 10.04 -39.61 -0.40 -1.45 16
23 C -0.13 -1.23 10.04 -39.55 -0.40 -1.63 16
24 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16
25 C -0.11 -1.57 9.39 -39.39 -0.37 -1.94 16
26 C 0.48 8.54 7.89 -16.33 -0.13 8.41 16
27 O -0.47 -6.76 13.58 -17.78 -0.24 -7.00 16
28 N -0.57 -12.13 9.07 -13.73 -0.12 -12.25 16
29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16
33 H 0.08 1.34 7.31 -51.93 -0.38 0.96 16
34 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16
35 H 0.05 1.46 7.31 -51.93 -0.38 1.08 16
36 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16
37 H 0.20 1.74 8.06 -52.49 -0.42 1.31 16
38 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16
39 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16
40 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16
41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16
42 H 0.14 2.00 7.22 -52.49 -0.38 1.62 16
43 H 0.41 3.74 9.06 45.56 0.41 4.15 16
LS Contribution 375.31 15.07 5.66 5.66
Total: -1.00 -32.80 375.31 -11.09 -43.89
By element:
Atomic # 1 Polarization: 8.62 SS G_CDS: -4.49 Total: 4.13 kcal
Atomic # 6 Polarization: 14.74 SS G_CDS: -7.38 Total: 7.36 kcal
Atomic # 7 Polarization: -70.51 SS G_CDS: 0.39 Total: -70.12 kcal
Atomic # 8 Polarization: -6.76 SS G_CDS: -0.24 Total: -7.00 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -32.80 -11.09 -43.89 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000301497226.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 171.871 kcal
(2) G-P(sol) polarization free energy of solvation -32.800 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) 127.980 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds