Wall clock time and date at job start Tue Mar 31 2020 22:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86794 * 120.00249 * 2 1 4 4 H 1.48505 * 109.47286 * 240.00072 * 3 2 1 5 5 H 1.48502 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47585 * 119.99794 * 3 2 1 7 7 C 1.40229 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00293 * 197.86501 * 7 2 1 9 9 C 1.41105 * 119.99694 * 17.86541 * 7 2 1 10 10 C 1.40892 * 120.10135 * 204.63024 * 9 7 2 11 11 C 1.36325 * 119.89173 * 180.02562 * 10 9 7 12 12 C 1.40012 * 120.10591 * 0.02562 * 11 10 9 13 13 C 1.47634 * 119.89336 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00516 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99689 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00031 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47251 * 179.97438 * 16 15 13 18 18 H 1.08996 * 109.46899 * 55.00091 * 17 16 15 19 19 C 1.52995 * 109.47129 * 294.99642 * 17 16 15 20 20 O 1.42911 * 109.46678 * 65.00240 * 19 17 16 21 21 C 1.53006 * 109.46917 * 175.00064 * 17 16 15 22 22 C 1.50698 * 109.46898 * 185.00126 * 21 17 16 23 23 C 1.38238 * 119.99816 * 269.72372 * 22 21 17 24 24 C 1.38235 * 119.99690 * 179.76180 * 23 22 21 25 25 C 1.38241 * 120.00122 * 0.51709 * 24 23 22 26 26 C 1.38232 * 119.99861 * 359.73999 * 25 24 23 27 27 C 1.38233 * 120.00060 * 359.97438 * 26 25 24 28 28 C 1.40012 * 120.20995 * 0.25256 * 12 11 10 29 29 C 1.36328 * 120.10694 * 359.48644 * 28 12 11 30 30 H 0.97004 * 119.99647 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.05353 * 359.97438 * 10 9 7 32 32 H 1.07994 * 119.94442 * 179.97438 * 11 10 9 33 33 H 0.96993 * 120.00014 * 359.97438 * 15 13 12 34 34 H 1.09001 * 109.47072 * 59.99673 * 16 15 13 35 35 H 1.09011 * 109.47022 * 300.00540 * 16 15 13 36 36 H 1.08995 * 109.47385 * 305.00531 * 19 17 16 37 37 H 1.08993 * 109.47240 * 184.99737 * 19 17 16 38 38 H 0.96700 * 113.99792 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.47179 * 304.99907 * 21 17 16 40 40 H 1.09001 * 109.47031 * 65.00118 * 21 17 16 41 41 H 1.07999 * 120.00052 * 0.02562 * 23 22 21 42 42 H 1.08002 * 119.99838 * 180.23033 * 24 23 22 43 43 H 1.07995 * 119.99653 * 179.72236 * 25 24 23 44 44 H 1.07996 * 120.00017 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00242 * 179.97438 * 27 26 25 46 46 H 1.07999 * 119.94909 * 179.73983 * 28 12 11 47 47 H 1.07990 * 120.05616 * 180.22736 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.0943 1.6963 -1.2125 5 1 1.2755 2.7464 -0.0006 6 1 3.0942 1.6964 1.2124 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2875 9 6 1.3530 -2.4071 -0.3738 10 6 1.8267 -3.6494 0.0924 11 6 1.1913 -4.7991 -0.2723 12 6 0.0702 -4.7467 -1.1094 13 6 -0.6139 -5.9946 -1.5019 14 8 -0.2034 -7.0657 -1.0989 15 7 -1.6937 -5.9466 -2.3072 16 6 -2.3723 -7.1850 -2.6972 17 6 -3.5575 -6.8527 -3.6059 18 1 -3.2110 -6.2615 -4.4534 19 6 -4.5964 -6.0532 -2.8171 20 8 -4.0416 -4.7905 -2.4424 21 6 -4.1904 -8.1500 -4.1135 22 6 -5.2785 -7.8240 -5.1038 23 6 -6.5772 -7.6393 -4.6677 24 6 -7.5745 -7.3354 -5.5755 25 6 -7.2750 -7.2269 -6.9207 26 6 -5.9773 -7.4169 -7.3574 27 6 -4.9790 -7.7149 -6.4489 28 6 -0.4007 -3.5149 -1.5799 29 6 0.2248 -2.3595 -1.2163 30 1 -0.4850 0.8401 -0.0004 31 1 2.6921 -3.6909 0.7371 32 1 1.5539 -5.7518 0.0842 33 1 -2.0215 -5.0921 -2.6284 34 1 -2.7314 -7.6989 -1.8055 35 1 -1.6738 -7.8293 -3.2313 36 1 -4.8774 -6.6068 -1.9212 37 1 -5.4786 -5.8928 -3.4367 38 1 -4.6466 -4.2292 -1.9384 39 1 -3.4286 -8.7603 -4.5986 40 1 -4.6159 -8.6995 -3.2738 41 1 -6.8119 -7.7281 -3.6173 42 1 -8.5884 -7.1874 -5.2344 43 1 -8.0550 -6.9939 -7.6304 44 1 -5.7434 -7.3325 -8.4084 45 1 -3.9652 -7.8637 -6.7901 46 1 -1.2634 -3.4797 -2.2288 47 1 -0.1413 -1.4097 -1.5768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340141929.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:32 Heat of formation + Delta-G solvation = -79.067186 kcal Electronic energy + Delta-G solvation = -27947.171912 eV Core-core repulsion = 24057.682779 eV Total energy + Delta-G solvation = -3889.489133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90338 -40.30128 -39.00490 -38.28343 -36.04729 -35.64272 -34.63090 -32.23303 -31.76288 -31.30871 -31.09578 -28.05983 -26.93118 -26.35437 -23.63071 -23.40754 -22.80592 -22.31030 -21.53465 -20.81379 -19.34240 -18.48726 -18.16864 -17.69229 -17.22606 -16.87467 -16.70359 -16.05500 -15.93024 -15.73084 -15.57883 -15.17521 -15.03989 -14.94557 -14.41406 -14.23263 -14.11996 -13.92859 -13.80748 -13.67189 -13.61082 -13.15002 -13.10150 -12.88967 -12.81789 -12.61553 -12.43959 -12.33739 -11.89468 -11.77263 -11.73946 -11.56724 -11.34664 -11.09774 -10.88293 -10.63319 -9.93879 -9.76626 -9.56368 -9.54596 -9.37074 -8.77217 -6.46054 0.46456 0.47889 0.53356 1.16885 1.39601 1.45792 1.52872 2.15081 2.20365 2.47271 2.81866 2.92352 3.30518 3.62068 3.71704 3.93160 4.04974 4.12727 4.20901 4.26554 4.33569 4.35121 4.39403 4.46691 4.49456 4.53862 4.59743 4.67827 4.74113 4.80183 4.84998 4.94793 4.98003 5.04906 5.15963 5.18869 5.21244 5.24898 5.32468 5.60755 5.60980 5.66830 5.72515 5.74792 5.85575 5.97937 6.02227 6.16052 6.24390 6.56037 6.78334 6.79857 6.90864 6.99152 7.54478 8.17990 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.002182 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.670373 B =12828.450402 C =13957.154203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.101 3.899 10 C -0.253 4.253 11 C -0.035 4.035 12 C -0.292 4.292 13 C 0.565 3.435 14 O -0.613 6.613 15 N -0.713 5.713 16 C 0.128 3.872 17 C -0.083 4.083 18 H 0.078 0.922 19 C 0.079 3.921 20 O -0.592 6.592 21 C -0.066 4.066 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.134 4.134 26 C -0.129 4.129 27 C -0.130 4.130 28 C -0.050 4.050 29 C -0.198 4.198 30 H 0.297 0.703 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.413 0.587 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.396 0.604 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.127 0.873 46 H 0.118 0.882 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 -8.104 -12.040 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.502 4.502 8 H 0.104 0.896 9 C 0.097 3.903 10 C -0.272 4.272 11 C -0.054 4.054 12 C -0.297 4.297 13 C 0.358 3.642 14 O -0.499 6.499 15 N -0.367 5.367 16 C 0.005 3.995 17 C -0.102 4.102 18 H 0.097 0.903 19 C 0.002 3.998 20 O -0.400 6.400 21 C -0.104 4.104 22 C -0.089 4.089 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.152 4.152 26 C -0.147 4.147 27 C -0.148 4.148 28 C -0.069 4.069 29 C -0.217 4.217 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.253 0.747 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.246 0.754 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.145 0.855 46 H 0.136 0.864 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.427 -8.935 -12.085 22.265 hybrid contribution -0.169 1.131 0.395 1.210 sum -16.596 -7.804 -11.690 21.748 Atomic orbital electron populations 1.69767 1.09229 1.31635 1.31495 1.26941 0.95575 1.04836 0.90849 0.85153 0.78848 0.74950 0.80273 1.18290 1.18732 1.18248 1.20071 0.98757 0.92184 1.39149 0.89648 1.18138 0.91268 0.92914 0.87935 1.20851 1.05182 0.92713 1.08478 1.20517 0.93559 0.97063 0.94287 1.19219 1.04296 0.92344 1.13820 1.18456 0.79883 0.88442 0.77390 1.90586 1.68201 1.32390 1.58732 1.45901 1.29327 1.11136 1.50362 1.21345 0.93647 0.86553 0.97989 1.21302 0.94062 0.97176 0.97692 0.90343 1.22372 0.95341 0.84339 0.97792 1.86275 1.46203 1.29969 1.77591 1.20475 0.96486 0.95305 0.98096 1.19909 0.94774 0.99883 0.94302 1.21294 0.92430 1.00140 1.00474 1.21441 1.00079 0.99512 0.93509 1.21458 0.97091 1.00171 0.96453 1.21419 0.93341 0.99517 1.00407 1.21302 1.00045 1.00390 0.93064 1.20699 0.97515 0.91597 0.97102 1.20996 1.00594 0.97286 1.02841 0.89198 0.87726 0.87977 0.74665 0.92591 0.92354 0.93038 0.91706 0.75378 0.89338 0.89227 0.84872 0.84414 0.84539 0.84772 0.85505 0.86425 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.70 10.96 21.87 0.24 -38.46 16 2 C 0.04 1.74 5.13 85.35 0.44 2.18 16 3 Si 0.99 35.25 29.60 68.60 2.03 37.28 16 4 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 5 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 7 C -0.47 -24.42 9.04 23.46 0.21 -24.21 16 8 H 0.09 4.20 7.91 -2.91 -0.02 4.18 16 9 C 0.10 5.38 5.57 -21.28 -0.12 5.26 16 10 C -0.25 -12.96 9.73 22.47 0.22 -12.74 16 11 C -0.04 -1.76 9.52 22.25 0.21 -1.55 16 12 C -0.29 -14.14 5.89 -19.94 -0.12 -14.26 16 13 C 0.57 25.47 7.76 86.72 0.67 26.14 16 14 O -0.61 -30.73 16.32 -3.98 -0.06 -30.80 16 15 N -0.71 -25.27 4.95 -466.15 -2.31 -27.58 16 16 C 0.13 3.60 5.06 86.38 0.44 4.04 16 17 C -0.08 -1.69 2.28 -10.79 -0.02 -1.71 16 18 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 19 C 0.08 1.48 6.16 71.98 0.44 1.92 16 20 O -0.59 -13.42 10.88 -148.98 -1.62 -15.04 16 21 C -0.07 -1.02 4.84 29.85 0.14 -0.87 16 22 C -0.09 -1.40 4.71 -19.87 -0.09 -1.49 16 23 C -0.13 -1.78 7.89 22.27 0.18 -1.61 16 24 C -0.13 -1.70 10.05 22.27 0.22 -1.47 16 25 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 26 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 27 C -0.13 -2.08 9.70 22.27 0.22 -1.87 16 28 C -0.05 -2.34 9.47 22.25 0.21 -2.13 16 29 C -0.20 -10.15 8.64 22.47 0.19 -9.95 16 30 H 0.30 12.79 8.29 -92.71 -0.77 12.02 16 31 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 32 H 0.10 4.98 7.63 -2.91 -0.02 4.95 16 33 H 0.41 13.91 4.29 -92.71 -0.40 13.51 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 1.04 5.94 -2.39 -0.01 1.02 16 38 H 0.40 6.17 9.12 -74.06 -0.68 5.49 16 39 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 40 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 41 H 0.13 1.48 8.01 -2.91 -0.02 1.46 16 42 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.12 4.76 6.37 -2.91 -0.02 4.74 16 47 H 0.11 5.86 6.16 -2.92 -0.02 5.84 16 Total: -1.00 -66.75 388.32 2.09 -64.66 By element: Atomic # 1 Polarization: 47.56 SS G_CDS: -0.07 Total: 47.48 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.89 Total: -37.54 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -2.07 Total: -66.04 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.69 Total: -45.84 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -66.75 2.09 -64.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340141929.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.412 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds