Wall clock time and date at job start Tue Mar 31 2020 22:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86791 * 120.00203 * 2 1 4 4 H 1.48501 * 109.47339 * 270.00082 * 3 2 1 5 5 H 1.48501 * 109.47123 * 29.99882 * 3 2 1 6 6 H 1.48494 * 109.47265 * 149.99995 * 3 2 1 7 7 C 1.39941 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99844 * 162.59902 * 7 2 1 9 9 C 1.41436 * 119.99771 * 342.60673 * 7 2 1 10 10 C 1.40793 * 120.17360 * 154.91129 * 9 7 2 11 11 C 1.37709 * 120.03827 * 179.97438 * 10 9 7 12 12 C 1.38377 * 120.41322 * 359.78583 * 11 10 9 13 13 C 1.39877 * 120.35417 * 0.47196 * 12 11 10 14 14 C 1.47893 * 120.02305 * 179.78556 * 13 12 11 15 15 O 1.21551 * 119.99808 * 179.71898 * 14 13 12 16 16 N 1.34769 * 120.00148 * 359.72418 * 14 13 12 17 17 C 1.46496 * 120.00375 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47501 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.47215 * 305.00265 * 18 17 16 20 20 C 1.53003 * 109.46679 * 65.00096 * 18 17 16 21 21 O 1.42906 * 109.46839 * 185.00146 * 20 18 17 22 22 C 1.52996 * 109.47354 * 184.99880 * 18 17 16 23 23 C 1.50703 * 109.47122 * 175.00349 * 22 18 17 24 24 C 1.38231 * 119.99981 * 90.00376 * 23 22 18 25 25 C 1.38232 * 119.99976 * 179.97438 * 24 23 22 26 26 C 1.38239 * 120.00016 * 359.95677 * 25 24 23 27 27 C 1.38240 * 119.99695 * 0.27576 * 26 25 24 28 28 C 1.38232 * 120.00241 * 359.51077 * 27 26 25 29 29 C 1.39036 * 119.95444 * 359.50625 * 13 12 11 30 30 H 0.96999 * 119.99403 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.98119 * 0.02562 * 10 9 7 32 32 H 1.07992 * 119.79608 * 180.02562 * 11 10 9 33 33 H 1.07992 * 119.82315 * 180.23399 * 12 11 10 34 34 H 0.97002 * 119.99928 * 0.02562 * 16 14 13 35 35 H 1.09007 * 109.47208 * 59.99883 * 17 16 14 36 36 H 1.09002 * 109.47281 * 299.99761 * 17 16 14 37 37 H 1.09000 * 109.47519 * 305.00202 * 20 18 17 38 38 H 1.09002 * 109.47258 * 65.00004 * 20 18 17 39 39 H 0.96700 * 113.99953 * 180.02562 * 21 20 18 40 40 H 1.09004 * 109.47010 * 55.00352 * 22 18 17 41 41 H 1.09002 * 109.47257 * 295.00624 * 22 18 17 42 42 H 1.07996 * 120.00228 * 359.97139 * 24 23 22 43 43 H 1.07998 * 120.00397 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00290 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.99857 * 179.72887 * 27 26 25 46 46 H 1.07998 * 120.00578 * 180.25564 * 28 27 26 47 47 H 1.07992 * 120.20431 * 180.23235 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0509 -1.2332 -0.2803 9 6 1.3493 -2.4089 0.3651 10 6 1.8188 -3.6485 -0.1095 11 6 1.1756 -4.8123 0.2486 12 6 0.0690 -4.7741 1.0786 13 6 -0.4151 -3.5515 1.5555 14 6 -1.6012 -3.5189 2.4383 15 8 -2.0184 -2.4566 2.8566 16 7 -2.2194 -4.6669 2.7790 17 6 -3.3940 -4.6348 3.6539 18 6 -3.8996 -6.0607 3.8817 19 1 -4.0871 -6.5378 2.9197 20 6 -2.8445 -6.8592 4.6499 21 8 -3.2650 -8.2205 4.7612 22 6 -5.1969 -6.0186 4.6916 23 6 -5.7599 -7.4114 4.8112 24 6 -5.3942 -8.2158 5.8742 25 6 -5.9110 -9.4932 5.9841 26 6 -6.7943 -9.9658 5.0316 27 6 -7.1563 -9.1630 3.9659 28 6 -6.6429 -7.8841 3.8583 29 6 0.2231 -2.3674 1.2038 30 1 -0.4849 0.8401 0.0004 31 1 2.6845 -3.6867 -0.7542 32 1 1.5394 -5.7609 -0.1173 33 1 -0.4258 -5.6929 1.3565 34 1 -1.8862 -5.5147 2.4455 35 1 -4.1796 -4.0415 3.1858 36 1 -3.1225 -4.1881 4.6104 37 1 -1.8952 -6.8147 4.1160 38 1 -2.7213 -6.4343 5.6461 39 1 -2.6429 -8.7866 5.2383 40 1 -5.9193 -5.3767 4.1874 41 1 -4.9916 -5.6230 5.6863 42 1 -4.7046 -7.8464 6.6187 43 1 -5.6250 -10.1218 6.8144 44 1 -7.1984 -10.9636 5.1177 45 1 -7.8429 -9.5338 3.2194 46 1 -6.9289 -7.2554 3.0281 47 1 -0.1450 -1.4215 1.5727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346233171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:37 Heat of formation + Delta-G solvation = -53.151354 kcal Electronic energy + Delta-G solvation = -28026.873359 eV Core-core repulsion = 24138.508021 eV Total energy + Delta-G solvation = -3888.365338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.82393 -39.13793 -37.57270 -36.92198 -35.23939 -33.80810 -33.29310 -30.92934 -30.89375 -29.83367 -29.44007 -26.21462 -25.90312 -25.14593 -22.64662 -22.48916 -21.41682 -20.93585 -20.44006 -19.46644 -17.91583 -17.38125 -16.83995 -16.15370 -16.08579 -15.59955 -15.21631 -14.95901 -14.85298 -14.71879 -14.61513 -13.89716 -13.78671 -13.43870 -13.23236 -13.22657 -12.86557 -12.77862 -12.62217 -12.49750 -12.28478 -11.94339 -11.67852 -11.52246 -11.18012 -11.11497 -11.07544 -10.92311 -10.79171 -10.74365 -10.51102 -10.18888 -10.05806 -9.71284 -9.22921 -9.06735 -8.86896 -8.70698 -8.54531 -7.65046 -7.53836 -6.81546 -4.43181 1.34063 1.42711 2.18715 2.79585 3.06705 3.09382 3.14907 3.58350 3.82225 3.84521 3.91003 4.01991 4.53351 4.62644 4.68528 4.82485 4.89015 4.95664 5.02982 5.17319 5.25861 5.34413 5.44358 5.48490 5.54062 5.57892 5.60714 5.65128 5.75737 5.90165 5.99018 6.02943 6.05910 6.11847 6.24896 6.42756 6.47486 6.62945 6.69632 6.80926 6.96829 6.99270 6.99980 7.19283 7.36054 7.45079 7.67724 7.73349 7.90115 8.06024 8.16830 8.48609 8.78451 8.81433 8.92047 10.13276 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.002053 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.547288 B =13637.778048 C =14200.746459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.564 3.436 15 O -0.546 6.546 16 N -0.739 5.739 17 C 0.127 3.873 18 C -0.092 4.092 19 H 0.086 0.914 20 C 0.077 3.923 21 O -0.555 6.555 22 C -0.072 4.072 23 C -0.066 4.066 24 C -0.064 4.064 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.116 4.116 29 C -0.092 4.092 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.370 0.630 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 -15.468 10.303 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.354 3.646 15 O -0.424 6.424 16 N -0.393 5.393 17 C 0.003 3.997 18 C -0.111 4.111 19 H 0.104 0.896 20 C -0.001 4.001 21 O -0.360 6.360 22 C -0.110 4.110 23 C -0.066 4.066 24 C -0.082 4.082 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.134 4.134 29 C -0.112 4.112 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.235 0.765 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.217 0.783 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.388 -14.282 10.263 20.952 hybrid contribution 1.009 -0.003 -0.042 1.010 sum -10.379 -14.284 10.221 20.402 Atomic orbital electron populations 1.69793 1.07575 1.29791 1.33607 1.25974 0.94786 1.01570 0.92318 0.86280 0.80604 0.80489 0.79226 1.19435 1.19946 1.18384 1.19577 0.98043 0.90985 1.40241 0.90081 1.17608 0.91204 0.92477 0.89115 1.21106 1.03481 0.92814 1.05696 1.20436 0.96105 0.96742 0.98333 1.20326 1.01464 0.94593 1.07467 1.19469 0.96559 0.95318 1.01787 1.18851 0.83258 0.82765 0.79687 1.90699 1.66408 1.30115 1.55140 1.45994 1.31219 1.09898 1.52204 1.21228 0.88594 0.94953 0.94944 1.21414 0.94618 0.94758 1.00287 0.89550 1.22213 0.96410 0.82620 0.98867 1.86761 1.49030 1.19942 1.80284 1.20545 0.95886 0.93778 1.00780 1.19607 0.96353 0.95797 0.94887 1.20731 0.96711 0.93638 0.97120 1.21010 0.98442 0.96173 0.99260 1.21030 0.98764 0.99404 0.95184 1.21012 1.00770 0.94499 0.98351 1.20988 0.97791 0.96018 0.98647 1.21631 0.96440 0.96409 0.96760 0.90426 0.88599 0.88910 0.89357 0.76535 0.91091 0.91588 0.93378 0.93562 0.78324 0.90591 0.90815 0.86936 0.86834 0.86883 0.86733 0.86642 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.72 10.97 55.55 0.61 -20.11 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.59 5.57 -106.87 -0.59 2.00 16 10 C -0.21 -4.98 9.78 -38.81 -0.38 -5.36 16 11 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 12 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.61 16 14 C 0.56 12.13 7.77 -12.31 -0.10 12.04 16 15 O -0.55 -13.53 16.33 5.32 0.09 -13.45 16 16 N -0.74 -11.77 5.18 -61.23 -0.32 -12.09 16 17 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 18 C -0.09 -0.94 2.26 -90.62 -0.20 -1.14 16 19 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 20 C 0.08 0.71 6.23 37.16 0.23 0.94 16 21 O -0.56 -4.84 9.05 -35.23 -0.32 -5.16 16 22 C -0.07 -0.67 4.84 -27.88 -0.13 -0.80 16 23 C -0.07 -0.66 4.26 -104.62 -0.45 -1.11 16 24 C -0.06 -0.59 6.63 -39.59 -0.26 -0.85 16 25 C -0.13 -1.16 10.05 -39.58 -0.40 -1.55 16 26 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 29 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 30 H 0.28 6.91 8.30 -40.82 -0.34 6.58 16 31 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.52 6.38 -52.49 -0.33 1.18 16 34 H 0.40 5.60 5.67 -40.82 -0.23 5.37 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.47 7.07 -51.93 -0.37 0.10 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.37 1.98 9.12 45.56 0.42 2.39 16 40 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 42 H 0.11 0.91 7.80 -52.49 -0.41 0.50 16 43 H 0.11 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.11 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.13 3.83 5.77 -52.49 -0.30 3.53 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -31.05 387.63 -10.59 -41.64 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -5.85 Total: 12.97 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -5.62 Total: -23.31 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.29 Total: -32.20 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.23 Total: -18.61 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.05 -10.59 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346233171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.514 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds