Wall clock time and date at job start Tue Mar 31 2020 22:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86791 * 120.00203 * 2 1 4 4 H 1.48501 * 109.47339 * 270.00082 * 3 2 1 5 5 H 1.48501 * 109.47123 * 29.99882 * 3 2 1 6 6 H 1.48494 * 109.47265 * 149.99995 * 3 2 1 7 7 C 1.39941 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99844 * 162.59902 * 7 2 1 9 9 C 1.41436 * 119.99771 * 342.60673 * 7 2 1 10 10 C 1.40793 * 120.17360 * 154.91129 * 9 7 2 11 11 C 1.37709 * 120.03827 * 179.97438 * 10 9 7 12 12 C 1.38377 * 120.41322 * 359.78583 * 11 10 9 13 13 C 1.39877 * 120.35417 * 0.47196 * 12 11 10 14 14 C 1.47893 * 120.02305 * 179.78556 * 13 12 11 15 15 O 1.21551 * 119.99808 * 179.71898 * 14 13 12 16 16 N 1.34769 * 120.00148 * 359.72418 * 14 13 12 17 17 C 1.46496 * 120.00375 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47501 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.47215 * 305.00265 * 18 17 16 20 20 C 1.53003 * 109.46679 * 65.00096 * 18 17 16 21 21 O 1.42906 * 109.46839 * 185.00146 * 20 18 17 22 22 C 1.52996 * 109.47354 * 184.99880 * 18 17 16 23 23 C 1.50703 * 109.47122 * 175.00349 * 22 18 17 24 24 C 1.38231 * 119.99981 * 90.00376 * 23 22 18 25 25 C 1.38232 * 119.99976 * 179.97438 * 24 23 22 26 26 C 1.38239 * 120.00016 * 359.95677 * 25 24 23 27 27 C 1.38240 * 119.99695 * 0.27576 * 26 25 24 28 28 C 1.38232 * 120.00241 * 359.51077 * 27 26 25 29 29 C 1.39036 * 119.95444 * 359.50625 * 13 12 11 30 30 H 0.96999 * 119.99403 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.98119 * 0.02562 * 10 9 7 32 32 H 1.07992 * 119.79608 * 180.02562 * 11 10 9 33 33 H 1.07992 * 119.82315 * 180.23399 * 12 11 10 34 34 H 0.97002 * 119.99928 * 0.02562 * 16 14 13 35 35 H 1.09007 * 109.47208 * 59.99883 * 17 16 14 36 36 H 1.09002 * 109.47281 * 299.99761 * 17 16 14 37 37 H 1.09000 * 109.47519 * 305.00202 * 20 18 17 38 38 H 1.09002 * 109.47258 * 65.00004 * 20 18 17 39 39 H 0.96700 * 113.99953 * 180.02562 * 21 20 18 40 40 H 1.09004 * 109.47010 * 55.00352 * 22 18 17 41 41 H 1.09002 * 109.47257 * 295.00624 * 22 18 17 42 42 H 1.07996 * 120.00228 * 359.97139 * 24 23 22 43 43 H 1.07998 * 120.00397 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00290 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.99857 * 179.72887 * 27 26 25 46 46 H 1.07998 * 120.00578 * 180.25564 * 28 27 26 47 47 H 1.07992 * 120.20431 * 180.23235 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0509 -1.2332 -0.2803 9 6 1.3493 -2.4089 0.3651 10 6 1.8188 -3.6485 -0.1095 11 6 1.1756 -4.8123 0.2486 12 6 0.0690 -4.7741 1.0786 13 6 -0.4151 -3.5515 1.5555 14 6 -1.6012 -3.5189 2.4383 15 8 -2.0184 -2.4566 2.8566 16 7 -2.2194 -4.6669 2.7790 17 6 -3.3940 -4.6348 3.6539 18 6 -3.8996 -6.0607 3.8817 19 1 -4.0871 -6.5378 2.9197 20 6 -2.8445 -6.8592 4.6499 21 8 -3.2650 -8.2205 4.7612 22 6 -5.1969 -6.0186 4.6916 23 6 -5.7599 -7.4114 4.8112 24 6 -5.3942 -8.2158 5.8742 25 6 -5.9110 -9.4932 5.9841 26 6 -6.7943 -9.9658 5.0316 27 6 -7.1563 -9.1630 3.9659 28 6 -6.6429 -7.8841 3.8583 29 6 0.2231 -2.3674 1.2038 30 1 -0.4849 0.8401 0.0004 31 1 2.6845 -3.6867 -0.7542 32 1 1.5394 -5.7609 -0.1173 33 1 -0.4258 -5.6929 1.3565 34 1 -1.8862 -5.5147 2.4455 35 1 -4.1796 -4.0415 3.1858 36 1 -3.1225 -4.1881 4.6104 37 1 -1.8952 -6.8147 4.1160 38 1 -2.7213 -6.4343 5.6461 39 1 -2.6429 -8.7866 5.2383 40 1 -5.9193 -5.3767 4.1874 41 1 -4.9916 -5.6230 5.6863 42 1 -4.7046 -7.8464 6.6187 43 1 -5.6250 -10.1218 6.8144 44 1 -7.1984 -10.9636 5.1177 45 1 -7.8429 -9.5338 3.2194 46 1 -6.9289 -7.2554 3.0281 47 1 -0.1450 -1.4215 1.5727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346233171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:36 Heat of formation + Delta-G solvation = -71.355441 kcal Electronic energy + Delta-G solvation = -28027.662747 eV Core-core repulsion = 24138.508021 eV Total energy + Delta-G solvation = -3889.154727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05092 -40.25990 -38.91738 -38.18286 -36.28187 -35.60884 -34.44392 -32.29283 -31.57247 -31.32984 -31.08442 -27.43807 -26.91406 -26.64790 -24.03095 -23.30814 -22.82534 -22.24557 -21.50445 -20.89414 -19.52263 -18.39331 -17.71039 -17.56667 -17.18508 -16.82735 -16.68038 -16.40004 -16.08992 -15.83653 -15.46377 -15.31757 -15.06712 -14.98029 -14.43398 -14.27430 -14.10546 -13.97140 -13.67251 -13.55241 -13.46509 -13.26140 -12.94371 -12.78874 -12.74955 -12.55832 -12.34003 -12.20056 -11.91807 -11.81385 -11.65952 -11.51363 -11.50669 -11.07099 -10.86506 -10.80345 -10.16322 -9.56139 -9.47427 -9.39049 -9.24840 -8.67003 -6.38726 0.37231 0.64429 0.74127 1.00222 1.36177 1.45988 1.52382 2.09071 2.19015 2.23017 2.78353 3.08260 3.27117 3.68717 3.71724 3.92835 4.02122 4.10248 4.18215 4.32295 4.36447 4.40714 4.44003 4.51416 4.56074 4.58869 4.60621 4.73984 4.81217 4.82888 4.89873 4.92207 5.03486 5.08451 5.18466 5.20846 5.30615 5.33188 5.36421 5.45245 5.51790 5.75067 5.80306 5.85655 5.91733 5.93062 6.04664 6.27993 6.32994 6.49334 6.66519 6.87441 6.93970 6.96450 7.29155 8.29910 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.002053 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.547288 B =13637.778048 C =14200.746459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.139 4.139 14 C 0.561 3.439 15 O -0.588 6.588 16 N -0.713 5.713 17 C 0.127 3.873 18 C -0.079 4.079 19 H 0.080 0.920 20 C 0.081 3.919 21 O -0.563 6.563 22 C -0.069 4.069 23 C -0.077 4.077 24 C -0.068 4.068 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.141 4.141 28 C -0.134 4.134 29 C -0.131 4.131 30 H 0.286 0.714 31 H 0.108 0.892 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.386 0.614 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.117 0.883 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.166 -18.247 10.997 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.217 4.217 13 C -0.142 4.142 14 C 0.350 3.650 15 O -0.470 6.470 16 N -0.366 5.366 17 C 0.004 3.996 18 C -0.098 4.098 19 H 0.098 0.902 20 C 0.003 3.997 21 O -0.370 6.370 22 C -0.107 4.107 23 C -0.077 4.077 24 C -0.086 4.086 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.152 4.152 29 C -0.152 4.152 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.249 0.751 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.235 0.765 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.142 0.858 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.135 0.865 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.203 -17.140 10.961 23.226 hybrid contribution 0.870 0.582 -0.211 1.068 sum -10.333 -16.558 10.750 22.282 Atomic orbital electron populations 1.69894 1.09242 1.30610 1.35399 1.26871 0.95432 1.05003 0.91354 0.85194 0.79083 0.75741 0.79678 1.18193 1.19735 1.17814 1.19854 0.98419 0.92135 1.42220 0.89779 1.17961 0.91831 0.93949 0.89852 1.21415 1.03899 0.92834 1.05463 1.20926 0.95432 0.97697 0.97355 1.20828 1.00615 0.95086 1.05158 1.19783 0.97025 0.95478 1.01906 1.18712 0.83151 0.83555 0.79541 1.90677 1.67497 1.32009 1.56779 1.45780 1.31017 1.08650 1.51196 1.21384 0.87065 0.97103 0.94098 1.21254 0.95404 0.92648 1.00464 0.90186 1.22105 0.95489 0.83019 0.99085 1.86724 1.49862 1.19738 1.80699 1.20518 0.95288 0.93853 1.01056 1.19690 0.96700 0.96007 0.95317 1.20902 0.96820 0.93772 0.97072 1.21297 0.98067 0.96317 0.99706 1.21327 0.98731 1.00194 0.94986 1.21252 1.01121 0.94504 0.99030 1.21168 0.98407 0.96567 0.99095 1.21439 0.98275 0.96421 0.99037 0.90309 0.87344 0.84394 0.84775 0.75058 0.91905 0.91515 0.93675 0.92648 0.76451 0.90605 0.89931 0.85815 0.84928 0.85202 0.85620 0.86504 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.27 10.97 21.83 0.24 -46.03 16 2 C 0.03 1.48 5.14 85.25 0.44 1.92 16 3 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.09 9.05 23.47 0.21 -26.88 16 8 H 0.08 4.31 7.90 -2.91 -0.02 4.29 16 9 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 10 C -0.22 -10.07 9.78 22.77 0.22 -9.85 16 11 C -0.10 -3.77 10.01 22.18 0.22 -3.55 16 12 C -0.20 -7.64 9.55 22.70 0.22 -7.42 16 13 C -0.14 -6.51 5.87 -20.13 -0.12 -6.62 16 14 C 0.56 24.25 7.77 86.80 0.67 24.92 16 15 O -0.59 -30.27 16.33 -3.88 -0.06 -30.34 16 16 N -0.71 -21.66 5.18 -465.93 -2.42 -24.07 16 17 C 0.13 3.17 5.06 86.38 0.44 3.61 16 18 C -0.08 -1.46 2.26 -10.79 -0.02 -1.48 16 19 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 20 C 0.08 1.27 6.23 71.98 0.45 1.72 16 21 O -0.56 -8.14 9.05 -148.98 -1.35 -9.49 16 22 C -0.07 -1.18 4.84 29.85 0.14 -1.03 16 23 C -0.08 -1.40 4.26 -19.86 -0.08 -1.49 16 24 C -0.07 -1.09 6.63 22.27 0.15 -0.94 16 25 C -0.14 -2.07 10.05 22.27 0.22 -1.85 16 26 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 27 C -0.14 -2.49 10.05 22.27 0.22 -2.27 16 28 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 29 C -0.13 -7.28 8.23 23.01 0.19 -7.09 16 30 H 0.29 14.78 8.30 -92.71 -0.77 14.01 16 31 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.13 3.92 6.38 -2.91 -0.02 3.90 16 34 H 0.41 10.30 5.67 -92.71 -0.53 9.78 16 35 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 0.73 7.07 -2.39 -0.02 0.72 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.39 2.86 9.12 -74.06 -0.68 2.19 16 40 H 0.08 1.27 8.09 -2.38 -0.02 1.25 16 41 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 42 H 0.12 1.66 7.80 -2.91 -0.02 1.64 16 43 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 46 H 0.12 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.10 6.10 5.77 -2.91 -0.02 6.08 16 Total: -1.00 -71.41 387.63 2.13 -69.27 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.20 Total: 38.05 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 3.90 Total: -39.10 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -2.18 Total: -70.11 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.41 Total: -39.82 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -71.41 2.13 -69.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346233171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.084 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds