Wall clock time and date at job start Tue Mar 31 2020 22:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40053 * 125.86722 * 2 1 4 4 C 1.30222 * 109.72077 * 180.02562 * 3 2 1 5 5 C 1.41261 * 108.46961 * 359.97438 * 4 3 2 6 6 C 1.36331 * 125.87054 * 179.97438 * 2 1 3 7 7 N 1.33133 * 134.54323 * 0.31196 * 6 2 1 8 8 C 1.32204 * 120.57074 * 180.16505 * 7 6 2 9 9 N 1.38387 * 118.79122 * 179.75708 * 8 7 6 10 10 C 1.46504 * 120.00304 * 179.72917 * 9 8 7 11 11 H 1.09008 * 109.46847 * 34.99983 * 10 9 8 12 12 C 1.52997 * 109.47349 * 154.99825 * 10 9 8 13 13 C 1.50701 * 109.47212 * 295.00023 * 12 10 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.50698 * 109.46820 * 275.00513 * 10 9 8 22 22 C 1.38239 * 120.00038 * 319.71712 * 21 10 9 23 23 C 1.38233 * 120.00108 * 179.81592 * 22 21 10 24 24 C 1.38232 * 119.99547 * 0.39864 * 23 22 21 25 25 C 1.38233 * 120.00435 * 359.85867 * 24 23 22 26 26 C 1.38233 * 120.00048 * 359.95315 * 25 24 23 27 27 N 1.32821 * 122.41724 * 359.47857 * 8 7 6 28 28 C 1.32551 * 121.16311 * 0.25525 * 27 8 7 29 29 O 1.35360 * 120.73244 * 179.97438 * 28 27 8 30 30 H 1.09001 * 109.47092 * 270.00313 * 1 2 3 31 31 H 1.09000 * 109.47141 * 30.00023 * 1 2 3 32 32 H 1.09002 * 109.47566 * 149.99997 * 1 2 3 33 33 H 1.08000 * 125.76696 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00205 * 359.72807 * 9 8 7 35 35 H 1.09002 * 109.47153 * 175.00025 * 12 10 9 36 36 H 1.09001 * 109.46832 * 55.00216 * 12 10 9 37 37 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 38 38 H 1.07999 * 119.99523 * 0.02562 * 22 21 10 39 39 H 1.07997 * 120.00088 * 180.23148 * 23 22 21 40 40 H 1.08005 * 119.99599 * 179.83322 * 24 23 22 41 41 H 1.08007 * 119.99657 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.99807 * 180.02562 * 26 25 24 43 43 H 0.96704 * 113.99887 * 90.00597 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2856 1.1350 0.0000 4 6 3.5364 0.7728 -0.0005 5 6 3.5937 -0.6386 -0.0003 6 6 2.2638 -1.1047 0.0005 7 7 2.0421 -2.4175 -0.0041 8 6 3.0525 -3.2701 0.0013 9 7 2.7798 -4.6268 0.0014 10 6 3.8792 -5.5950 0.0013 11 1 4.7083 -5.2033 0.5907 12 6 3.3981 -6.9132 0.6111 13 6 3.0551 -6.6995 2.0629 14 1 3.1686 -5.7213 2.5063 15 6 2.5955 -7.7527 2.8250 16 7 2.2958 -7.5660 4.0918 17 14 2.3986 -9.4445 2.0579 18 1 3.6627 -10.2083 2.2126 19 1 1.2955 -10.1705 2.7370 20 1 2.0812 -9.2997 0.6145 21 6 4.3379 -5.8340 -1.4141 22 6 3.4100 -5.9333 -2.4340 23 6 3.8309 -6.1487 -3.7329 24 6 5.1793 -6.2731 -4.0107 25 6 6.1069 -6.1791 -2.9902 26 6 5.6862 -5.9598 -1.6918 27 7 4.3198 -2.8723 0.0012 28 6 4.6346 -1.5847 0.0006 29 8 5.9291 -1.1891 0.0011 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 4.3865 1.4390 -0.0003 34 1 1.8606 -4.9368 0.0015 35 1 4.1875 -7.6604 0.5304 36 1 2.5138 -7.2596 0.0760 37 1 1.9728 -8.3070 4.6280 38 1 2.3563 -5.8392 -2.2163 39 1 3.1062 -6.2226 -4.5302 40 1 5.5080 -6.4441 -5.0252 41 1 7.1604 -6.2767 -3.2074 42 1 6.4110 -5.8860 -0.8946 43 1 6.3056 -1.0746 -0.8823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439098111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:00 Heat of formation + Delta-G solvation = 118.680246 kcal Electronic energy + Delta-G solvation = -28897.615070 eV Core-core repulsion = 24945.453317 eV Total energy + Delta-G solvation = -3952.161753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84062 -39.53708 -38.88041 -37.70651 -35.75385 -33.56505 -32.80403 -32.22769 -31.52886 -30.63191 -29.53366 -28.66182 -27.02228 -25.06878 -23.93856 -22.69549 -22.20569 -21.78647 -21.08149 -20.05500 -18.93076 -18.15031 -17.25724 -17.05640 -16.43925 -16.32987 -15.98435 -15.36706 -14.95881 -14.93368 -14.55700 -14.34087 -14.18056 -13.90186 -13.65647 -13.17249 -13.08694 -12.71533 -12.69480 -12.57846 -12.43143 -12.04614 -11.82177 -11.45414 -11.36410 -11.17107 -10.79549 -10.76796 -10.66901 -10.48045 -10.25842 -9.94572 -9.60981 -9.31090 -8.98073 -8.75019 -8.67150 -8.62572 -8.37761 -7.68866 -6.11581 -4.11873 0.79964 1.53064 1.61920 1.65929 2.09684 2.49094 3.15850 3.25468 3.33613 3.35133 3.54486 4.02143 4.08965 4.21549 4.37086 4.71852 4.78897 5.01389 5.05978 5.12471 5.16137 5.19816 5.21705 5.24295 5.37350 5.39735 5.45391 5.76741 5.77467 5.83463 5.96621 6.17471 6.25331 6.31600 6.37989 6.64230 6.69723 6.71649 6.85627 6.89611 6.98660 7.21440 7.26211 7.33443 7.41194 7.55723 7.62754 7.86298 8.42056 8.62940 8.94140 9.48579 11.01252 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.004237 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.302606 B = 6606.170244 C = 8364.771641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.392 5.392 3 N -0.267 5.267 4 C 0.120 3.880 5 C -0.360 4.360 6 C 0.403 3.597 7 N -0.605 5.605 8 C 0.640 3.360 9 N -0.651 5.651 10 C 0.206 3.794 11 H 0.100 0.900 12 C -0.015 4.015 13 C -0.521 4.521 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.126 4.126 24 C -0.133 4.133 25 C -0.124 4.124 26 C -0.103 4.103 27 N -0.587 5.587 28 C 0.485 3.515 29 O -0.472 6.472 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.195 0.805 34 H 0.418 0.582 35 H 0.033 0.967 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.405 11.911 -15.197 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.184 5.184 3 N -0.080 5.080 4 C -0.077 4.077 5 C -0.377 4.377 6 C 0.153 3.847 7 N -0.341 5.341 8 C 0.280 3.720 9 N -0.283 5.283 10 C 0.102 3.898 11 H 0.118 0.882 12 C -0.053 4.053 13 C -0.559 4.559 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.078 4.078 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.122 4.122 27 N -0.321 5.321 28 C 0.283 3.717 29 O -0.279 6.279 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.212 0.788 34 H 0.257 0.743 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.189 11.681 -14.421 18.687 hybrid contribution 0.238 -0.927 -0.616 1.138 sum 2.427 10.754 -15.037 18.646 Atomic orbital electron populations 1.21784 0.73336 1.04201 1.03331 1.48106 1.06145 1.00061 1.64070 1.76897 1.01954 1.07082 1.22113 1.23596 0.95014 0.92782 0.96337 1.19955 0.95067 0.95829 1.26856 1.18498 0.87863 0.87416 0.90929 1.66841 1.35111 0.99475 1.32633 1.18570 0.81961 0.86892 0.84551 1.44417 1.10777 0.98989 1.74165 1.20093 0.89238 0.90105 0.90408 0.88225 1.19903 0.96972 0.91076 0.97312 1.20987 1.44477 0.98082 0.92383 0.90661 1.24981 0.94691 0.98735 0.94628 1.69908 1.44694 1.32139 1.06733 0.86857 0.78149 0.84782 0.79978 1.20160 1.21347 1.18955 1.20568 0.93492 0.97342 0.96411 1.20962 0.99507 0.99676 0.92513 1.21051 0.95781 1.01038 0.96491 1.21022 0.93389 1.01905 0.98772 1.21061 0.99142 1.00917 0.93052 1.21023 0.95290 0.99302 0.96559 1.67421 1.20919 1.17412 1.26376 1.18503 0.83564 0.85502 0.84087 1.84623 1.21887 1.87388 1.34046 0.91083 0.89582 0.89183 0.78796 0.74302 0.94846 0.95763 0.92616 0.86536 0.86754 0.86820 0.86505 0.85855 0.73107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.20 11.47 59.85 0.69 1.89 16 2 N -0.39 -5.65 4.05 -67.25 -0.27 -5.92 16 3 N -0.27 -3.64 12.45 30.82 0.38 -3.25 16 4 C 0.12 1.46 12.05 -17.09 -0.21 1.25 16 5 C -0.36 -5.34 6.19 -106.82 -0.66 -6.00 16 6 C 0.40 6.67 8.04 -156.25 -1.26 5.42 16 7 N -0.60 -10.90 10.48 -13.31 -0.14 -11.04 16 8 C 0.64 11.82 8.38 -322.78 -2.70 9.11 16 9 N -0.65 -12.02 4.18 -56.92 -0.24 -12.26 16 10 C 0.21 3.90 2.10 -69.08 -0.14 3.75 16 11 H 0.10 2.04 7.35 -51.92 -0.38 1.66 16 12 C -0.01 -0.33 3.56 -27.88 -0.10 -0.43 16 13 C -0.52 -13.95 9.39 -34.44 -0.32 -14.27 16 14 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -26.94 13.96 55.43 0.77 -26.16 16 17 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 21 C -0.08 -1.27 4.93 -104.62 -0.52 -1.78 16 22 C -0.11 -1.67 9.32 -39.58 -0.37 -2.04 16 23 C -0.13 -1.69 10.05 -39.59 -0.40 -2.08 16 24 C -0.13 -1.66 10.05 -39.59 -0.40 -2.06 16 25 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 26 C -0.10 -1.55 9.67 -39.58 -0.38 -1.93 16 27 N -0.59 -10.32 9.16 -13.73 -0.13 -10.45 16 28 C 0.48 7.27 7.89 -16.33 -0.13 7.15 16 29 O -0.47 -5.40 13.58 -17.77 -0.24 -5.64 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.42 7.60 8.71 -40.82 -0.36 7.24 16 35 H 0.03 0.74 7.57 -51.93 -0.39 0.34 16 36 H 0.02 0.53 7.20 -51.93 -0.37 0.15 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.12 1.75 7.73 -52.49 -0.41 1.34 16 39 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 42 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 43 H 0.41 2.37 9.06 45.56 0.41 2.79 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -34.20 373.27 -10.76 -44.96 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.46 Total: 10.11 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -7.40 Total: -2.12 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: 0.38 Total: -69.08 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.24 Total: -5.64 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.20 -10.76 -44.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439098111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.645 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds