Wall clock time and date at job start Tue Mar 31 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40053 * 125.86722 * 2 1 4 4 C 1.30222 * 109.72077 * 180.02562 * 3 2 1 5 5 C 1.41261 * 108.46961 * 359.97438 * 4 3 2 6 6 C 1.36331 * 125.87054 * 179.97438 * 2 1 3 7 7 N 1.33133 * 134.54323 * 0.31196 * 6 2 1 8 8 C 1.32204 * 120.57074 * 180.16505 * 7 6 2 9 9 N 1.38387 * 118.79122 * 179.75708 * 8 7 6 10 10 C 1.46504 * 120.00304 * 179.72917 * 9 8 7 11 11 H 1.09008 * 109.46847 * 34.99983 * 10 9 8 12 12 C 1.52997 * 109.47349 * 154.99825 * 10 9 8 13 13 C 1.50701 * 109.47212 * 295.00023 * 12 10 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.50698 * 109.46820 * 275.00513 * 10 9 8 22 22 C 1.38239 * 120.00038 * 319.71712 * 21 10 9 23 23 C 1.38233 * 120.00108 * 179.81592 * 22 21 10 24 24 C 1.38232 * 119.99547 * 0.39864 * 23 22 21 25 25 C 1.38233 * 120.00435 * 359.85867 * 24 23 22 26 26 C 1.38233 * 120.00048 * 359.95315 * 25 24 23 27 27 N 1.32821 * 122.41724 * 359.47857 * 8 7 6 28 28 C 1.32551 * 121.16311 * 0.25525 * 27 8 7 29 29 O 1.35360 * 120.73244 * 179.97438 * 28 27 8 30 30 H 1.09001 * 109.47092 * 270.00313 * 1 2 3 31 31 H 1.09000 * 109.47141 * 30.00023 * 1 2 3 32 32 H 1.09002 * 109.47566 * 149.99997 * 1 2 3 33 33 H 1.08000 * 125.76696 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00205 * 359.72807 * 9 8 7 35 35 H 1.09002 * 109.47153 * 175.00025 * 12 10 9 36 36 H 1.09001 * 109.46832 * 55.00216 * 12 10 9 37 37 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 38 38 H 1.07999 * 119.99523 * 0.02562 * 22 21 10 39 39 H 1.07997 * 120.00088 * 180.23148 * 23 22 21 40 40 H 1.08005 * 119.99599 * 179.83322 * 24 23 22 41 41 H 1.08007 * 119.99657 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.99807 * 180.02562 * 26 25 24 43 43 H 0.96704 * 113.99887 * 90.00597 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2856 1.1350 0.0000 4 6 3.5364 0.7728 -0.0005 5 6 3.5937 -0.6386 -0.0003 6 6 2.2638 -1.1047 0.0005 7 7 2.0421 -2.4175 -0.0041 8 6 3.0525 -3.2701 0.0013 9 7 2.7798 -4.6268 0.0014 10 6 3.8792 -5.5950 0.0013 11 1 4.7083 -5.2033 0.5907 12 6 3.3981 -6.9132 0.6111 13 6 3.0551 -6.6995 2.0629 14 1 3.1686 -5.7213 2.5063 15 6 2.5955 -7.7527 2.8250 16 7 2.2958 -7.5660 4.0918 17 14 2.3986 -9.4445 2.0579 18 1 3.6627 -10.2083 2.2126 19 1 1.2955 -10.1705 2.7370 20 1 2.0812 -9.2997 0.6145 21 6 4.3379 -5.8340 -1.4141 22 6 3.4100 -5.9333 -2.4340 23 6 3.8309 -6.1487 -3.7329 24 6 5.1793 -6.2731 -4.0107 25 6 6.1069 -6.1791 -2.9902 26 6 5.6862 -5.9598 -1.6918 27 7 4.3198 -2.8723 0.0012 28 6 4.6346 -1.5847 0.0006 29 8 5.9291 -1.1891 0.0011 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 4.3865 1.4390 -0.0003 34 1 1.8606 -4.9368 0.0015 35 1 4.1875 -7.6604 0.5304 36 1 2.5138 -7.2596 0.0760 37 1 1.9728 -8.3070 4.6280 38 1 2.3563 -5.8392 -2.2163 39 1 3.1062 -6.2226 -4.5302 40 1 5.5080 -6.4441 -5.0252 41 1 7.1604 -6.2767 -3.2074 42 1 6.4110 -5.8860 -0.8946 43 1 6.3056 -1.0746 -0.8823 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439098111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:59 Heat of formation + Delta-G solvation = 95.737556 kcal Electronic energy + Delta-G solvation = -28898.609940 eV Core-core repulsion = 24945.453317 eV Total energy + Delta-G solvation = -3953.156623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.99050 -40.73937 -39.98649 -38.78469 -37.11823 -34.78688 -34.61590 -33.40435 -32.90283 -31.69147 -30.99623 -30.02000 -28.01000 -26.67530 -25.09619 -23.91593 -23.49920 -23.18439 -22.15051 -21.36277 -20.06105 -19.35401 -19.03818 -18.33422 -17.66948 -17.54491 -17.17401 -16.48242 -16.40166 -16.17957 -15.95135 -15.64310 -15.14550 -15.10575 -14.98583 -14.64079 -14.28164 -14.13612 -13.80277 -13.61304 -13.56304 -13.54008 -13.14724 -12.95156 -12.61222 -12.44851 -12.39721 -11.95999 -11.92782 -11.78535 -11.73327 -11.59981 -11.45417 -10.86542 -10.78159 -10.25273 -9.86563 -9.72677 -9.53185 -8.98416 -8.28119 -6.32903 -0.34771 0.29662 0.51993 0.59469 1.02330 1.37142 1.38269 1.45483 1.49363 1.93832 2.35560 2.41636 2.77004 2.98853 3.07644 3.16923 3.53181 3.66616 3.93438 4.00735 4.04277 4.09259 4.23916 4.34618 4.37663 4.40616 4.46698 4.60974 4.64087 4.75247 4.76643 4.83479 5.07581 5.17331 5.21399 5.29177 5.34862 5.50821 5.56311 5.67762 5.68383 5.73476 5.96414 6.06072 6.20763 6.25231 6.39391 6.51951 6.59949 6.74492 7.30228 7.32777 8.88627 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.004237 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.302606 B = 6606.170244 C = 8364.771641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.396 5.396 3 N -0.277 5.277 4 C 0.135 3.865 5 C -0.365 4.365 6 C 0.374 3.626 7 N -0.623 5.623 8 C 0.627 3.373 9 N -0.659 5.659 10 C 0.222 3.778 11 H 0.074 0.926 12 C -0.008 4.008 13 C -0.517 4.517 14 H 0.027 0.973 15 C 0.009 3.991 16 N -0.950 5.950 17 Si 0.946 3.054 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.243 1.243 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.117 4.117 27 N -0.611 5.611 28 C 0.490 3.510 29 O -0.467 6.467 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.414 0.586 35 H 0.038 0.962 36 H 0.032 0.968 37 H 0.265 0.735 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.122 0.878 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 12.235 -18.384 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.187 5.187 3 N -0.090 5.090 4 C -0.062 4.062 5 C -0.382 4.382 6 C 0.124 3.876 7 N -0.360 5.360 8 C 0.267 3.733 9 N -0.292 5.292 10 C 0.117 3.883 11 H 0.092 0.908 12 C -0.045 4.045 13 C -0.555 4.555 14 H 0.046 0.954 15 C -0.187 4.187 16 N -0.591 5.591 17 Si 0.770 3.230 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.166 1.166 21 C -0.095 4.095 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.136 4.136 27 N -0.346 5.346 28 C 0.290 3.710 29 O -0.278 6.278 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.256 0.744 34 H 0.252 0.748 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.140 0.860 43 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 3.443 12.076 -17.652 21.663 hybrid contribution -0.076 -0.817 0.370 0.900 sum 3.367 11.259 -17.282 20.899 Atomic orbital electron populations 1.22031 0.71721 1.05475 1.04042 1.48494 1.07270 0.99562 1.63339 1.76904 1.02549 1.06812 1.22710 1.24278 0.95710 0.91940 0.94260 1.20214 0.94328 0.97171 1.26497 1.18868 0.89485 0.87423 0.91780 1.66777 1.35346 1.00438 1.33404 1.18644 0.82611 0.86813 0.85198 1.44303 1.10325 0.99354 1.75189 1.19665 0.88330 0.88348 0.91950 0.90786 1.19774 0.97293 0.93212 0.94259 1.21181 1.43481 0.95961 0.94869 0.95420 1.25927 0.94475 1.03400 0.94947 1.70078 1.46723 1.33598 1.08678 0.85719 0.78254 0.79005 0.80024 1.19246 1.21382 1.16637 1.20314 0.94562 0.99715 0.94946 1.21030 0.99153 1.00539 0.93390 1.21357 0.97051 1.00108 0.96028 1.21444 0.92761 0.99946 1.00249 1.21387 1.00877 0.99502 0.91996 1.21147 0.94594 0.99932 0.97883 1.67444 1.20535 1.18858 1.27763 1.18638 0.84829 0.84846 0.82725 1.84587 1.20096 1.86905 1.36212 0.90636 0.87019 0.89229 0.74373 0.74783 0.94355 0.95004 0.92609 0.87088 0.84424 0.83469 0.83618 0.86037 0.70121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.21 11.47 127.77 1.47 3.68 16 2 N -0.40 -11.19 4.05 -366.67 -1.48 -12.68 16 3 N -0.28 -7.07 12.45 -56.41 -0.70 -7.77 16 4 C 0.14 2.97 12.05 85.67 1.03 4.00 16 5 C -0.36 -10.57 6.19 -21.29 -0.13 -10.70 16 6 C 0.37 12.53 8.04 134.17 1.08 13.61 16 7 N -0.62 -23.44 10.48 -196.02 -2.06 -25.49 16 8 C 0.63 24.32 8.38 261.48 2.19 26.51 16 9 N -0.66 -25.80 4.18 -333.99 -1.40 -27.20 16 10 C 0.22 8.76 2.10 44.24 0.09 8.86 16 11 H 0.07 3.24 7.35 -2.38 -0.02 3.23 16 12 C -0.01 -0.34 3.56 29.85 0.11 -0.24 16 13 C -0.52 -29.01 9.39 25.60 0.24 -28.77 16 14 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 15 C 0.01 0.54 5.47 84.66 0.46 1.01 16 16 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 17 Si 0.95 43.36 27.47 68.60 1.88 45.25 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 21 C -0.09 -3.11 4.93 -19.87 -0.10 -3.20 16 22 C -0.12 -3.69 9.32 22.27 0.21 -3.49 16 23 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 24 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 25 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 26 C -0.12 -3.40 9.67 22.27 0.22 -3.18 16 27 N -0.61 -22.12 9.16 -310.25 -2.84 -24.96 16 28 C 0.49 14.52 7.89 85.18 0.67 15.19 16 29 O -0.47 -9.90 13.58 -86.51 -1.17 -11.07 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 33 H 0.24 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.41 16.17 8.71 -92.70 -0.81 15.36 16 35 H 0.04 1.69 7.57 -2.39 -0.02 1.67 16 36 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 37 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.11 3.36 7.73 -2.91 -0.02 3.34 16 39 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.12 3.45 8.04 -2.91 -0.02 3.43 16 43 H 0.43 4.00 9.06 -74.05 -0.67 3.33 16 Total: -1.00 -78.05 373.27 0.28 -77.77 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.46 Total: 29.99 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 8.21 Total: 15.43 kcal Atomic # 7 Polarization: -149.19 SS G_CDS: -8.18 Total: -157.37 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.17 Total: -11.07 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Total: -78.05 0.28 -77.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439098111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.506 kcal (2) G-P(sol) polarization free energy of solvation -78.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds