Wall clock time and date at job start Tue Mar 31 2020 22:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48503 * 109.46977 * 274.98523 * 3 2 1 5 5 H 1.48504 * 109.47151 * 34.98085 * 3 2 1 6 6 H 1.48502 * 109.47346 * 154.98077 * 3 2 1 7 7 C 1.39945 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99719 * 161.06518 * 7 2 1 9 9 C 1.41397 * 119.99692 * 341.07663 * 7 2 1 10 10 C 1.40717 * 120.23863 * 152.96164 * 9 7 2 11 11 C 1.37620 * 119.73722 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25249 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.75110 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47323 * 89.99425 * 13 12 11 15 15 C 1.46896 * 111.00031 * 179.01579 * 14 13 12 16 16 C 1.52997 * 109.69389 * 55.78698 * 15 14 13 17 17 O 1.42898 * 109.47163 * 54.41104 * 16 15 14 18 18 C 1.53415 * 109.73178 * 176.36336 * 15 14 13 19 19 O 1.42826 * 108.37498 * 55.00403 * 18 15 14 20 20 C 1.35852 * 117.85783 * 49.18595 * 19 18 15 21 21 C 1.39143 * 118.50048 * 162.93168 * 20 19 18 22 22 C 1.37964 * 120.21520 * 179.70932 * 21 20 19 23 23 C 1.38293 * 119.96093 * 0.02733 * 22 21 20 24 24 C 1.38108 * 119.97990 * 0.07590 * 23 22 21 25 25 C 1.38368 * 121.80055 * 342.78995 * 20 19 18 26 26 C 1.50769 * 121.41371 * 0.46343 * 25 20 19 27 27 C 1.38635 * 120.50427 * 0.29080 * 12 11 10 28 28 C 1.37620 * 120.24145 * 359.45409 * 27 12 11 29 29 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.13162 * 0.04192 * 10 9 7 31 31 H 1.08001 * 119.87278 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47109 * 329.99923 * 13 12 11 33 33 H 1.09004 * 109.47066 * 209.99633 * 13 12 11 34 34 H 1.00899 * 111.00043 * 302.97651 * 14 13 12 35 35 H 1.09000 * 109.47218 * 174.41221 * 16 15 14 36 36 H 1.09000 * 109.47178 * 294.41271 * 16 15 14 37 37 H 0.96708 * 114.00058 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.68135 * 174.72703 * 18 15 14 39 39 H 1.08997 * 109.67948 * 295.28568 * 18 15 14 40 40 H 1.07998 * 119.89100 * 359.68919 * 21 20 19 41 41 H 1.07999 * 120.02138 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00697 * 180.35907 * 23 22 21 43 43 H 1.07996 * 119.83992 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.43484 * 102.26267 * 26 25 20 45 45 H 1.08999 * 109.43765 * 222.13849 * 26 25 20 46 46 H 1.07994 * 119.88249 * 179.70906 * 27 12 11 47 47 H 1.07999 * 120.12939 * 180.27654 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4962 2.6200 0.8027 6 1 3.5885 1.4122 0.5921 7 6 2.0080 -1.2119 0.0005 8 1 3.0443 -1.2372 -0.3030 9 6 1.3584 -2.4032 0.3982 10 6 1.7900 -3.6462 -0.1005 11 6 1.1499 -4.7991 0.2930 12 6 0.0842 -4.7392 1.1775 13 6 -0.6082 -6.0089 1.6014 14 7 0.0438 -6.5443 2.8039 15 6 -0.6206 -7.7723 3.2605 16 6 -0.6509 -8.7955 2.1234 17 8 0.6756 -9.0039 1.6347 18 6 0.1366 -8.3553 4.4607 19 8 0.2379 -7.3436 5.4638 20 6 -0.8933 -6.6738 5.8063 21 6 -0.9060 -5.9592 7.0002 22 6 -2.0340 -5.2612 7.3796 23 6 -3.1566 -5.2714 6.5721 24 6 -3.1483 -5.9814 5.3875 25 6 -2.0189 -6.6843 5.0016 26 6 -2.0501 -7.4513 3.7040 27 6 -0.3530 -3.5197 1.6710 28 6 0.2754 -2.3544 1.2953 29 1 -0.4850 0.8400 -0.0004 30 1 2.6205 -3.6952 -0.7892 31 1 1.4791 -5.7543 -0.0888 32 1 -0.5462 -6.7423 0.7975 33 1 -1.6549 -5.7965 1.8196 34 1 1.0268 -6.7039 2.6416 35 1 -1.0541 -9.7381 2.4935 36 1 -1.2812 -8.4228 1.3160 37 1 0.7322 -9.6421 0.9103 38 1 -0.4079 -9.2123 4.8572 39 1 1.1342 -8.6653 4.1499 40 1 -0.0301 -5.9511 7.6319 41 1 -2.0402 -4.7073 8.3067 42 1 -4.0380 -4.7206 6.8656 43 1 -4.0264 -5.9881 4.7589 44 1 -2.6034 -8.3798 3.8447 45 1 -2.5407 -6.8497 2.9388 46 1 -1.1872 -3.4842 2.3559 47 1 -0.0639 -1.4058 1.6843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528646561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:12 Heat of formation + Delta-G solvation = -41.048146 kcal Electronic energy + Delta-G solvation = -29388.374845 eV Core-core repulsion = 25500.534341 eV Total energy + Delta-G solvation = -3887.840504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87623 -38.39980 -37.46684 -36.97976 -35.39224 -33.81727 -32.39743 -30.86434 -30.15590 -29.30540 -28.94443 -26.36346 -26.12276 -25.67238 -23.25325 -22.43714 -21.74540 -20.89612 -19.86576 -18.92232 -17.92995 -17.47407 -17.22535 -16.47460 -15.87815 -15.79010 -15.25195 -15.07482 -14.89164 -14.38035 -14.13334 -13.90835 -13.64595 -13.50177 -13.37495 -13.28494 -12.97033 -12.74416 -12.45290 -12.24415 -11.93526 -11.87295 -11.83632 -11.48695 -11.36282 -11.13378 -11.02540 -10.90418 -10.81821 -10.48747 -10.35964 -10.28639 -10.04669 -9.52971 -9.31055 -9.07591 -8.68738 -8.04390 -7.92729 -7.37208 -7.22935 -6.72087 -4.29013 1.43219 1.58806 2.79077 3.10354 3.13888 3.14526 3.21318 3.40682 3.80672 3.92502 3.97996 4.39763 4.47406 4.61654 4.75099 4.85055 4.99969 5.05513 5.13520 5.15269 5.30276 5.30816 5.43494 5.54438 5.60985 5.66335 5.71730 5.77539 5.91347 5.92847 5.97835 6.10282 6.31565 6.40388 6.43598 6.50898 6.56775 6.62490 6.88007 7.01177 7.13415 7.33419 7.34006 7.40995 7.42662 7.59819 7.68134 7.79417 7.95157 8.11462 8.20652 8.36448 8.70221 8.95323 9.03911 10.24381 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.003229 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.095447 B = 8668.203557 C =10185.438959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.468 4.468 8 H 0.076 0.924 9 C 0.116 3.884 10 C -0.227 4.227 11 C -0.083 4.083 12 C -0.208 4.208 13 C 0.125 3.875 14 N -0.653 5.653 15 C 0.080 3.920 16 C 0.048 3.952 17 O -0.566 6.566 18 C 0.079 3.921 19 O -0.301 6.301 20 C 0.152 3.848 21 C -0.154 4.154 22 C -0.091 4.091 23 C -0.158 4.158 24 C -0.086 4.086 25 C -0.139 4.139 26 C -0.066 4.066 27 C -0.077 4.077 28 C -0.165 4.165 29 H 0.279 0.721 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.021 0.979 33 H 0.059 0.941 34 H 0.350 0.650 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.380 0.620 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 -16.026 8.925 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.095 0.905 9 C 0.113 3.887 10 C -0.246 4.246 11 C -0.101 4.101 12 C -0.210 4.210 13 C -0.003 4.003 14 N -0.285 5.285 15 C -0.013 4.013 16 C -0.032 4.032 17 O -0.371 6.371 18 C 0.003 3.997 19 O -0.214 6.214 20 C 0.107 3.893 21 C -0.172 4.172 22 C -0.109 4.109 23 C -0.176 4.176 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.103 4.103 27 C -0.096 4.096 28 C -0.185 4.185 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.170 0.830 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.227 0.773 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.462 -14.997 9.882 19.087 hybrid contribution 0.258 -0.243 -1.481 1.522 sum -6.204 -15.239 8.401 18.474 Atomic orbital electron populations 1.69837 1.07593 1.29126 1.35386 1.25871 0.94649 1.01152 0.92220 0.86384 0.80915 0.80970 0.78948 1.19668 1.20051 1.18422 1.19560 0.98527 0.91518 1.40166 0.90543 1.17597 0.90707 0.91965 0.88404 1.20943 1.04511 0.93088 1.06079 1.20353 0.95852 0.96215 0.97719 1.18838 1.02647 0.92804 1.06697 1.20608 0.97032 0.93857 0.88765 1.60708 1.07276 1.24992 1.35510 1.21588 0.95537 0.90485 0.93695 1.22834 0.84667 0.98257 0.97402 1.86447 1.27703 1.66915 1.56032 1.22943 1.02479 0.88248 0.86060 1.85988 1.30507 1.49390 1.55503 1.18593 0.85289 0.93048 0.92368 1.20538 0.99618 1.01513 0.95558 1.20847 0.92579 0.97963 0.99476 1.20922 0.98880 1.01932 0.95850 1.20832 0.97048 0.96136 0.96387 1.19501 0.94548 1.03527 0.96377 1.20497 0.95118 0.99589 0.95141 1.20463 0.98356 0.92559 0.98183 1.21194 1.00050 0.96580 1.00640 0.90983 0.89226 0.89892 0.96060 0.92230 0.82966 0.93600 0.92643 0.77254 0.92057 0.87141 0.85606 0.85847 0.86270 0.86272 0.90699 0.89368 0.89678 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.06 11.20 55.55 0.62 -20.44 16 2 C 0.08 2.03 5.09 -17.34 -0.09 1.94 16 3 Si 0.90 19.12 29.60 -169.99 -5.03 14.09 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.78 9.04 -37.74 -0.34 -13.12 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.60 16 9 C 0.12 3.17 5.54 -106.82 -0.59 2.58 16 10 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 11 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 12 C -0.21 -4.58 5.42 -104.33 -0.57 -5.15 16 13 C 0.12 2.18 5.03 -4.97 -0.03 2.16 16 14 N -0.65 -10.56 5.55 -100.96 -0.56 -11.12 16 15 C 0.08 0.99 0.38 -131.35 -0.05 0.94 16 16 C 0.05 0.49 5.22 37.16 0.19 0.68 16 17 O -0.57 -5.94 12.62 -35.23 -0.44 -6.38 16 18 C 0.08 0.95 5.87 37.37 0.22 1.17 16 19 O -0.30 -4.48 10.02 -19.27 -0.19 -4.68 16 20 C 0.15 2.25 6.39 -39.20 -0.25 2.00 16 21 C -0.15 -2.09 9.94 -39.35 -0.39 -2.49 16 22 C -0.09 -1.10 10.04 -39.66 -0.40 -1.49 16 23 C -0.16 -1.89 10.05 -39.61 -0.40 -2.28 16 24 C -0.09 -1.08 9.67 -39.53 -0.38 -1.46 16 25 C -0.14 -1.90 5.64 -104.44 -0.59 -2.49 16 26 C -0.07 -0.79 4.64 -27.81 -0.13 -0.92 16 27 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 28 C -0.17 -4.43 8.68 -38.87 -0.34 -4.77 16 29 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 30 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.02 0.35 6.38 -51.93 -0.33 0.02 16 33 H 0.06 1.03 6.13 -51.93 -0.32 0.71 16 34 H 0.35 6.10 8.23 -39.29 -0.32 5.78 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 37 H 0.38 2.38 9.12 45.56 0.42 2.79 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 1.30 7.79 -51.93 -0.40 0.89 16 40 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 44 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 45 H 0.09 1.10 6.05 -51.93 -0.31 0.78 16 46 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 47 H 0.11 3.07 6.40 -52.49 -0.34 2.73 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -30.51 379.89 -10.89 -41.40 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -5.74 Total: 14.70 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: -5.27 Total: -33.29 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.06 Total: -31.56 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.64 Total: -11.06 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.51 -10.89 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528646561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.349 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds