Wall clock time and date at job start Tue Mar 31 2020 22:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48503 * 109.46977 * 274.98523 * 3 2 1 5 5 H 1.48504 * 109.47151 * 34.98085 * 3 2 1 6 6 H 1.48502 * 109.47346 * 154.98077 * 3 2 1 7 7 C 1.39945 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99719 * 161.06518 * 7 2 1 9 9 C 1.41397 * 119.99692 * 341.07663 * 7 2 1 10 10 C 1.40717 * 120.23863 * 152.96164 * 9 7 2 11 11 C 1.37620 * 119.73722 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25249 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.75110 * 180.02562 * 12 11 10 14 14 N 1.46901 * 109.47323 * 89.99425 * 13 12 11 15 15 C 1.46896 * 111.00031 * 179.01579 * 14 13 12 16 16 C 1.52997 * 109.69389 * 55.78698 * 15 14 13 17 17 O 1.42898 * 109.47163 * 54.41104 * 16 15 14 18 18 C 1.53415 * 109.73178 * 176.36336 * 15 14 13 19 19 O 1.42826 * 108.37498 * 55.00403 * 18 15 14 20 20 C 1.35852 * 117.85783 * 49.18595 * 19 18 15 21 21 C 1.39143 * 118.50048 * 162.93168 * 20 19 18 22 22 C 1.37964 * 120.21520 * 179.70932 * 21 20 19 23 23 C 1.38293 * 119.96093 * 0.02733 * 22 21 20 24 24 C 1.38108 * 119.97990 * 0.07590 * 23 22 21 25 25 C 1.38368 * 121.80055 * 342.78995 * 20 19 18 26 26 C 1.50769 * 121.41371 * 0.46343 * 25 20 19 27 27 C 1.38635 * 120.50427 * 0.29080 * 12 11 10 28 28 C 1.37620 * 120.24145 * 359.45409 * 27 12 11 29 29 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.13162 * 0.04192 * 10 9 7 31 31 H 1.08001 * 119.87278 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47109 * 329.99923 * 13 12 11 33 33 H 1.09004 * 109.47066 * 209.99633 * 13 12 11 34 34 H 1.00899 * 111.00043 * 302.97651 * 14 13 12 35 35 H 1.09000 * 109.47218 * 174.41221 * 16 15 14 36 36 H 1.09000 * 109.47178 * 294.41271 * 16 15 14 37 37 H 0.96708 * 114.00058 * 180.02562 * 17 16 15 38 38 H 1.08997 * 109.68135 * 174.72703 * 18 15 14 39 39 H 1.08997 * 109.67948 * 295.28568 * 18 15 14 40 40 H 1.07998 * 119.89100 * 359.68919 * 21 20 19 41 41 H 1.07999 * 120.02138 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00697 * 180.35907 * 23 22 21 43 43 H 1.07996 * 119.83992 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.43484 * 102.26267 * 26 25 20 45 45 H 1.08999 * 109.43765 * 222.13849 * 26 25 20 46 46 H 1.07994 * 119.88249 * 179.70906 * 27 12 11 47 47 H 1.07999 * 120.12939 * 180.27654 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4962 2.6200 0.8027 6 1 3.5885 1.4122 0.5921 7 6 2.0080 -1.2119 0.0005 8 1 3.0443 -1.2372 -0.3030 9 6 1.3584 -2.4032 0.3982 10 6 1.7900 -3.6462 -0.1005 11 6 1.1499 -4.7991 0.2930 12 6 0.0842 -4.7392 1.1775 13 6 -0.6082 -6.0089 1.6014 14 7 0.0438 -6.5443 2.8039 15 6 -0.6206 -7.7723 3.2605 16 6 -0.6509 -8.7955 2.1234 17 8 0.6756 -9.0039 1.6347 18 6 0.1366 -8.3553 4.4607 19 8 0.2379 -7.3436 5.4638 20 6 -0.8933 -6.6738 5.8063 21 6 -0.9060 -5.9592 7.0002 22 6 -2.0340 -5.2612 7.3796 23 6 -3.1566 -5.2714 6.5721 24 6 -3.1483 -5.9814 5.3875 25 6 -2.0189 -6.6843 5.0016 26 6 -2.0501 -7.4513 3.7040 27 6 -0.3530 -3.5197 1.6710 28 6 0.2754 -2.3544 1.2953 29 1 -0.4850 0.8400 -0.0004 30 1 2.6205 -3.6952 -0.7892 31 1 1.4791 -5.7543 -0.0888 32 1 -0.5462 -6.7423 0.7975 33 1 -1.6549 -5.7965 1.8196 34 1 1.0268 -6.7039 2.6416 35 1 -1.0541 -9.7381 2.4935 36 1 -1.2812 -8.4228 1.3160 37 1 0.7322 -9.6421 0.9103 38 1 -0.4079 -9.2123 4.8572 39 1 1.1342 -8.6653 4.1499 40 1 -0.0301 -5.9511 7.6319 41 1 -2.0402 -4.7073 8.3067 42 1 -4.0380 -4.7206 6.8656 43 1 -4.0264 -5.9881 4.7589 44 1 -2.6034 -8.3798 3.8447 45 1 -2.5407 -6.8497 2.9388 46 1 -1.1872 -3.4842 2.3559 47 1 -0.0639 -1.4058 1.6843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528646561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:11 Heat of formation + Delta-G solvation = -60.296825 kcal Electronic energy + Delta-G solvation = -29389.209530 eV Core-core repulsion = 25500.534341 eV Total energy + Delta-G solvation = -3888.675189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.85181 -39.69755 -38.94470 -37.95941 -36.46248 -35.54436 -33.71086 -32.15582 -31.20561 -31.12564 -30.47990 -27.81226 -27.05634 -26.78737 -24.81348 -23.48577 -22.89193 -22.64476 -21.65801 -19.90857 -19.20265 -18.89188 -18.27346 -17.41389 -17.22216 -16.92197 -16.79238 -16.19332 -15.86111 -15.79142 -15.41693 -15.28873 -15.12307 -14.89752 -14.50535 -14.25746 -14.23753 -13.90752 -13.81165 -13.73453 -13.35171 -13.31087 -13.08664 -12.93493 -12.75879 -12.59765 -12.43282 -12.18497 -12.11200 -11.95539 -11.73830 -11.39572 -11.27633 -11.19370 -11.01057 -10.86710 -9.64404 -9.33370 -9.29776 -9.09371 -8.93253 -8.64306 -6.32235 0.47370 0.61132 0.96251 1.15724 1.36534 1.47294 1.53151 2.20802 2.43431 2.70587 2.88144 3.11272 3.39752 3.56311 3.70738 3.80996 3.97592 4.11399 4.20188 4.28268 4.29815 4.35511 4.42976 4.46912 4.50533 4.54992 4.57521 4.61738 4.68319 4.71744 4.78696 4.84387 4.91933 5.00578 5.08787 5.17354 5.18782 5.36757 5.46218 5.47135 5.61102 5.67685 5.72667 5.93660 5.97649 6.10427 6.19740 6.29167 6.40786 6.50593 6.64396 6.71740 6.86853 6.95304 7.05280 8.34797 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.003229 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.095447 B = 8668.203557 C =10185.438959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.038 3.962 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.083 3.917 10 C -0.242 4.242 11 C -0.081 4.081 12 C -0.194 4.194 13 C 0.137 3.863 14 N -0.667 5.667 15 C 0.079 3.921 16 C 0.054 3.946 17 O -0.585 6.585 18 C 0.076 3.924 19 O -0.323 6.323 20 C 0.128 3.872 21 C -0.175 4.175 22 C -0.095 4.095 23 C -0.163 4.163 24 C -0.097 4.097 25 C -0.152 4.152 26 C -0.065 4.065 27 C -0.084 4.084 28 C -0.189 4.189 29 H 0.287 0.713 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.342 0.658 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.399 0.601 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -17.592 9.092 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.539 4.539 8 H 0.091 0.909 9 C 0.081 3.919 10 C -0.262 4.262 11 C -0.100 4.100 12 C -0.195 4.195 13 C 0.009 3.991 14 N -0.298 5.298 15 C -0.013 4.013 16 C -0.025 4.025 17 O -0.393 6.393 18 C 0.000 4.000 19 O -0.237 6.237 20 C 0.083 3.917 21 C -0.193 4.193 22 C -0.113 4.113 23 C -0.181 4.181 24 C -0.115 4.115 25 C -0.153 4.153 26 C -0.102 4.102 27 C -0.103 4.103 28 C -0.209 4.209 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.249 0.751 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.123 0.877 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.452 -16.600 10.038 20.781 hybrid contribution 0.507 0.072 -1.465 1.552 sum -6.944 -16.528 8.572 19.872 Atomic orbital electron populations 1.69886 1.09043 1.30469 1.35995 1.26716 0.95427 1.04390 0.91162 0.85262 0.79225 0.76178 0.79451 1.18488 1.19007 1.18417 1.19802 0.98733 0.92911 1.42421 0.90890 1.17920 0.91576 0.93122 0.89319 1.21167 1.05122 0.93416 1.06480 1.20662 0.95435 0.96648 0.97256 1.19327 1.01528 0.94059 1.04635 1.20447 0.96671 0.91948 0.90027 1.60563 1.06864 1.27886 1.34478 1.21670 0.95404 0.89602 0.94592 1.22733 0.84674 0.98764 0.96365 1.86406 1.27928 1.67871 1.57091 1.23104 1.02909 0.88392 0.85552 1.85945 1.31122 1.50208 1.56421 1.18871 0.85735 0.93933 0.93197 1.20806 1.00473 1.02188 0.95867 1.21177 0.92135 0.97596 1.00404 1.21288 0.99593 1.01628 0.95598 1.21163 0.97479 0.95911 0.96924 1.19782 0.94480 1.04000 0.97063 1.20555 0.94963 1.00664 0.94004 1.20652 0.98509 0.92767 0.98376 1.21135 1.01172 0.96731 1.01814 0.90242 0.88747 0.86852 0.94389 0.91661 0.83960 0.90647 0.92654 0.75120 0.89654 0.87194 0.85402 0.83572 0.84013 0.84455 0.87744 0.89852 0.88782 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.29 11.20 21.83 0.24 -45.04 16 2 C 0.04 1.99 5.09 85.26 0.43 2.42 16 3 Si 0.98 39.92 29.60 68.60 2.03 41.95 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.51 -28.91 9.04 23.46 0.21 -28.69 16 8 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 9 C 0.08 4.71 5.54 -21.29 -0.12 4.59 16 10 C -0.24 -12.42 9.80 22.73 0.22 -12.19 16 11 C -0.08 -3.63 9.67 22.22 0.21 -3.42 16 12 C -0.19 -8.38 5.42 -19.68 -0.11 -8.49 16 13 C 0.14 4.50 5.03 85.56 0.43 4.93 16 14 N -0.67 -20.47 5.55 -473.34 -2.63 -23.10 16 15 C 0.08 1.77 0.38 3.69 0.00 1.77 16 16 C 0.05 0.90 5.22 71.98 0.38 1.28 16 17 O -0.58 -10.48 12.62 -148.98 -1.88 -12.36 16 18 C 0.08 1.68 5.87 72.12 0.42 2.11 16 19 O -0.32 -9.47 10.02 -91.88 -0.92 -10.39 16 20 C 0.13 3.70 6.39 22.52 0.14 3.84 16 21 C -0.17 -4.73 9.94 22.42 0.22 -4.51 16 22 C -0.10 -2.20 10.04 22.22 0.22 -1.98 16 23 C -0.16 -3.63 10.05 22.25 0.22 -3.40 16 24 C -0.10 -2.27 9.67 22.30 0.22 -2.05 16 25 C -0.15 -3.93 5.64 -19.75 -0.11 -4.04 16 26 C -0.06 -1.37 4.64 29.89 0.14 -1.23 16 27 C -0.08 -4.13 9.67 22.22 0.21 -3.91 16 28 C -0.19 -10.54 8.68 22.73 0.20 -10.34 16 29 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 30 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.04 1.14 6.38 -2.39 -0.02 1.12 16 33 H 0.07 2.10 6.13 -2.38 -0.01 2.08 16 34 H 0.34 11.45 8.23 -89.69 -0.74 10.72 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.94 6.72 -2.39 -0.02 0.92 16 37 H 0.40 3.69 9.12 -74.05 -0.68 3.01 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 2.41 7.79 -2.39 -0.02 2.39 16 40 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.10 1.57 8.09 -2.39 -0.02 1.55 16 45 H 0.08 1.84 6.05 -2.39 -0.01 1.83 16 46 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 47 H 0.09 5.25 6.40 -2.91 -0.02 5.23 16 Total: -1.00 -68.61 379.89 0.00 -68.61 By element: Atomic # 1 Polarization: 44.05 SS G_CDS: -0.40 Total: 43.64 kcal Atomic # 6 Polarization: -66.87 SS G_CDS: 3.56 Total: -63.32 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -2.38 Total: -68.14 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -2.80 Total: -22.75 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -68.61 0.00 -68.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528646561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.313 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds