Wall clock time and date at job start Tue Mar 31 2020 22:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48504 * 109.47114 * 269.99839 * 3 2 1 5 5 H 1.48496 * 109.47093 * 29.99855 * 3 2 1 6 6 H 1.48502 * 109.47052 * 150.00068 * 3 2 1 7 7 C 1.39944 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99885 * 194.85531 * 7 2 1 9 9 C 1.41395 * 119.99913 * 14.86137 * 7 2 1 10 10 C 1.40713 * 120.24535 * 25.90179 * 9 7 2 11 11 C 1.37614 * 119.74171 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.25266 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.75152 * 179.97438 * 12 11 10 14 14 N 1.46893 * 109.47460 * 90.00086 * 13 12 11 15 15 C 1.46894 * 111.00263 * 182.82466 * 14 13 12 16 16 C 1.53005 * 109.69448 * 306.18353 * 15 14 13 17 17 O 1.42900 * 109.47111 * 300.72189 * 16 15 14 18 18 C 1.53411 * 109.70391 * 185.62247 * 15 14 13 19 19 O 1.42830 * 108.38382 * 305.03126 * 18 15 14 20 20 C 1.35841 * 117.86911 * 310.90647 * 19 18 15 21 21 C 1.39158 * 118.49757 * 196.99629 * 20 19 18 22 22 C 1.37962 * 120.21636 * 180.18216 * 21 20 19 23 23 C 1.38289 * 119.96182 * 0.02975 * 22 21 20 24 24 C 1.38101 * 119.98215 * 359.88656 * 23 22 21 25 25 C 1.38367 * 121.81341 * 17.04421 * 20 19 18 26 26 C 1.50774 * 121.40823 * 359.66035 * 25 20 19 27 27 C 1.38636 * 120.50202 * 359.97438 * 12 11 10 28 28 C 1.37623 * 120.24665 * 0.02562 * 27 12 11 29 29 H 0.96996 * 120.00347 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.12634 * 0.25571 * 10 9 7 31 31 H 1.08005 * 119.87197 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.47020 * 210.00094 * 13 12 11 33 33 H 1.08999 * 109.46900 * 329.99464 * 13 12 11 34 34 H 1.00904 * 111.00342 * 58.86233 * 14 13 12 35 35 H 1.08994 * 109.47106 * 60.72698 * 16 15 14 36 36 H 1.09004 * 109.46877 * 180.72283 * 16 15 14 37 37 H 0.96699 * 113.99679 * 179.97438 * 17 16 15 38 38 H 1.09003 * 109.68247 * 64.75259 * 18 15 14 39 39 H 1.08997 * 109.68265 * 185.30953 * 18 15 14 40 40 H 1.08002 * 119.88658 * 0.19420 * 21 20 19 41 41 H 1.08003 * 120.02086 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.00785 * 179.91684 * 23 22 21 43 43 H 1.08003 * 119.84744 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.43348 * 257.72371 * 26 25 20 45 45 H 1.08998 * 109.43934 * 137.84606 * 26 25 20 46 46 H 1.08004 * 119.87966 * 179.97438 * 27 12 11 47 47 H 1.07995 * 120.12983 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0609 -1.2274 0.2403 9 6 1.3365 -2.4161 -0.3130 10 6 0.1867 -2.3960 -1.1239 11 6 -0.4585 -3.5742 -1.4230 12 6 0.0206 -4.7777 -0.9291 13 6 -0.6951 -6.0612 -1.2632 14 7 -0.1366 -6.6260 -2.4989 15 6 -0.8558 -7.8448 -2.8927 16 6 -0.8735 -8.8331 -1.7249 17 8 0.4682 -9.1569 -1.3545 18 6 -0.1633 -8.4859 -4.1023 19 8 -0.0688 -7.5072 -5.1382 20 6 -1.1900 -6.8098 -5.4573 21 6 -1.2255 -6.1283 -6.6700 22 6 -2.3449 -5.4058 -7.0280 23 6 -3.4360 -5.3572 -6.1797 24 6 -3.4051 -6.0338 -4.9761 25 6 -2.2845 -6.7622 -4.6121 26 6 -2.2905 -7.4911 -3.2923 27 6 1.1531 -4.8095 -0.1301 28 6 1.8144 -3.6436 0.1819 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1854 -1.4601 -1.5138 31 1 -1.3409 -3.5613 -2.0455 32 1 -0.5653 -6.7725 -0.4476 33 1 -1.7570 -5.8591 -1.4035 34 1 0.8515 -6.8049 -2.4004 35 1 -1.3863 -8.3825 -0.8753 36 1 -1.3967 -9.7410 -2.0252 37 1 0.5333 -9.7802 -0.6181 38 1 0.8353 -8.8189 -3.8197 39 1 -0.7489 -9.3358 -4.4526 40 1 -0.3738 -6.1653 -7.3332 41 1 -2.3692 -4.8784 -7.9702 42 1 -4.3122 -4.7908 -6.4586 43 1 -4.2585 -5.9947 -4.3154 44 1 -2.8770 -8.4051 -3.3855 45 1 -2.7333 -6.8531 -2.5275 46 1 1.5174 -5.7527 0.2496 47 1 2.6967 -3.6707 0.8041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528646562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:16 Heat of formation + Delta-G solvation = -40.526207 kcal Electronic energy + Delta-G solvation = -29388.485738 eV Core-core repulsion = 25500.667867 eV Total energy + Delta-G solvation = -3887.817871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.87270 -38.40162 -37.46695 -36.97521 -35.40767 -33.82396 -32.40605 -30.84095 -30.14891 -29.30120 -28.92147 -26.38287 -26.11851 -25.66859 -23.26778 -22.43264 -21.73958 -20.88783 -19.85611 -18.92193 -17.95169 -17.44959 -17.23145 -16.46849 -15.88635 -15.77980 -15.27750 -15.05893 -14.90301 -14.38681 -14.12613 -13.90036 -13.63251 -13.49164 -13.36621 -13.27659 -12.95790 -12.76317 -12.46135 -12.25817 -11.93215 -11.86949 -11.81024 -11.47824 -11.35776 -11.12494 -11.05060 -10.89785 -10.80832 -10.47096 -10.32705 -10.28002 -10.05086 -9.54936 -9.28972 -9.11622 -8.67921 -8.04205 -7.93037 -7.37090 -7.22238 -6.68384 -4.30291 1.44041 1.59601 2.78950 3.10156 3.13928 3.14863 3.20946 3.41248 3.81103 3.92286 3.97727 4.39671 4.48432 4.62075 4.76311 4.85065 5.00330 5.05826 5.13675 5.15875 5.30308 5.32033 5.44429 5.54736 5.61476 5.67579 5.72128 5.78184 5.90768 5.93127 5.97000 6.10996 6.30768 6.41039 6.43509 6.50982 6.57479 6.63285 6.88709 7.01807 7.13263 7.33590 7.36229 7.40904 7.43182 7.60362 7.68254 7.77936 7.95287 8.12414 8.21709 8.36938 8.71518 8.95996 9.04363 10.25787 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003235 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.400593 B = 8652.247692 C =10182.130853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.164 4.164 11 C -0.078 4.078 12 C -0.207 4.207 13 C 0.124 3.876 14 N -0.653 5.653 15 C 0.080 3.920 16 C 0.047 3.953 17 O -0.566 6.566 18 C 0.079 3.921 19 O -0.302 6.302 20 C 0.152 3.848 21 C -0.154 4.154 22 C -0.091 4.091 23 C -0.157 4.157 24 C -0.086 4.086 25 C -0.138 4.138 26 C -0.065 4.065 27 C -0.084 4.084 28 C -0.226 4.226 29 H 0.279 0.721 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.350 0.650 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.380 0.620 38 H 0.112 0.888 39 H 0.061 0.939 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 -16.059 -7.941 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.183 4.183 11 C -0.097 4.097 12 C -0.208 4.208 13 C -0.003 4.003 14 N -0.285 5.285 15 C -0.013 4.013 16 C -0.032 4.032 17 O -0.372 6.372 18 C 0.003 3.997 19 O -0.215 6.215 20 C 0.107 3.893 21 C -0.172 4.172 22 C -0.109 4.109 23 C -0.176 4.176 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.103 4.103 27 C -0.103 4.103 28 C -0.246 4.246 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.169 0.831 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.227 0.773 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.101 -15.058 -8.905 18.881 hybrid contribution 0.328 -0.214 1.492 1.542 sum -6.774 -15.272 -7.413 18.278 Atomic orbital electron populations 1.69818 1.07489 1.28980 1.36067 1.25887 0.94749 1.01187 0.92348 0.86319 0.80420 0.80707 0.79280 1.19309 1.20368 1.18697 1.19599 0.97038 0.91001 1.41758 0.90602 1.17624 0.91252 0.91969 0.88182 1.21328 0.98992 0.96692 1.01290 1.20482 0.98315 0.92605 0.98343 1.18848 1.00806 0.92827 1.08357 1.20621 0.97628 0.93675 0.88411 1.60702 1.07677 1.24616 1.35530 1.21587 0.95480 0.90533 0.93687 1.22868 0.84159 0.97850 0.98374 1.86444 1.26481 1.68078 1.56165 1.22935 1.02801 0.88699 0.85287 1.85986 1.31743 1.50279 1.53444 1.18593 0.85471 0.92800 0.92448 1.20541 0.99698 1.01650 0.95341 1.20845 0.92796 0.97787 0.99437 1.20919 0.99175 1.02115 0.95362 1.20831 0.97011 0.96074 0.96474 1.19497 0.95008 1.03457 0.95965 1.20482 0.94904 0.99835 0.95033 1.20345 0.95368 0.96157 0.98454 1.20943 1.03269 0.93175 1.07206 0.91020 0.86476 0.89694 0.96054 0.92200 0.83063 0.92481 0.93591 0.77276 0.87045 0.92063 0.85615 0.85850 0.86273 0.86271 0.90704 0.89405 0.89933 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.12 10.88 55.55 0.60 -20.51 16 2 C 0.08 1.94 5.19 -17.34 -0.09 1.85 16 3 Si 0.91 19.17 29.58 -169.99 -5.03 14.14 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.66 9.06 -37.74 -0.34 -13.00 16 8 H 0.08 2.00 7.89 -52.49 -0.41 1.58 16 9 C 0.11 3.07 5.57 -106.82 -0.59 2.48 16 10 C -0.16 -4.39 8.68 -38.88 -0.34 -4.73 16 11 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 12 C -0.21 -4.55 5.44 -104.33 -0.57 -5.11 16 13 C 0.12 2.16 4.96 -4.98 -0.02 2.14 16 14 N -0.65 -10.56 5.57 -100.97 -0.56 -11.12 16 15 C 0.08 0.99 0.38 -131.35 -0.05 0.94 16 16 C 0.05 0.48 5.34 37.16 0.20 0.68 16 17 O -0.57 -5.88 12.62 -35.23 -0.44 -6.32 16 18 C 0.08 0.95 5.82 37.37 0.22 1.17 16 19 O -0.30 -4.51 10.02 -19.24 -0.19 -4.70 16 20 C 0.15 2.26 6.38 -39.19 -0.25 2.01 16 21 C -0.15 -2.11 9.94 -39.34 -0.39 -2.50 16 22 C -0.09 -1.10 10.04 -39.66 -0.40 -1.50 16 23 C -0.16 -1.90 10.04 -39.61 -0.40 -2.30 16 24 C -0.09 -1.09 9.67 -39.53 -0.38 -1.47 16 25 C -0.14 -1.90 5.64 -104.44 -0.59 -2.49 16 26 C -0.07 -0.78 4.67 -27.81 -0.13 -0.91 16 27 C -0.08 -1.92 9.67 -39.66 -0.38 -2.30 16 28 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 29 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 30 H 0.12 3.27 6.17 -52.49 -0.32 2.94 16 31 H 0.08 1.94 8.06 -52.48 -0.42 1.52 16 32 H 0.02 0.35 6.36 -51.93 -0.33 0.02 16 33 H 0.06 1.02 6.14 -51.93 -0.32 0.70 16 34 H 0.35 6.06 8.39 -39.29 -0.33 5.73 16 35 H 0.06 0.60 6.46 -51.93 -0.34 0.27 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 2.33 9.12 45.56 0.42 2.75 16 38 H 0.11 1.32 7.64 -51.93 -0.40 0.93 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 42 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 43 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 44 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 45 H 0.09 1.09 6.12 -51.93 -0.32 0.78 16 46 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 47 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -30.41 379.31 -10.90 -41.31 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -5.71 Total: 14.89 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -5.28 Total: -33.41 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.04 Total: -31.63 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.64 Total: -11.03 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.41 -10.90 -41.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528646562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.784 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds