Wall clock time and date at job start Tue Mar 31 2020 22:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48504 * 109.47114 * 269.99839 * 3 2 1 5 5 H 1.48496 * 109.47093 * 29.99855 * 3 2 1 6 6 H 1.48502 * 109.47052 * 150.00068 * 3 2 1 7 7 C 1.39944 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99885 * 194.85531 * 7 2 1 9 9 C 1.41395 * 119.99913 * 14.86137 * 7 2 1 10 10 C 1.40713 * 120.24535 * 25.90179 * 9 7 2 11 11 C 1.37614 * 119.74171 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.25266 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.75152 * 179.97438 * 12 11 10 14 14 N 1.46893 * 109.47460 * 90.00086 * 13 12 11 15 15 C 1.46894 * 111.00263 * 182.82466 * 14 13 12 16 16 C 1.53005 * 109.69448 * 306.18353 * 15 14 13 17 17 O 1.42900 * 109.47111 * 300.72189 * 16 15 14 18 18 C 1.53411 * 109.70391 * 185.62247 * 15 14 13 19 19 O 1.42830 * 108.38382 * 305.03126 * 18 15 14 20 20 C 1.35841 * 117.86911 * 310.90647 * 19 18 15 21 21 C 1.39158 * 118.49757 * 196.99629 * 20 19 18 22 22 C 1.37962 * 120.21636 * 180.18216 * 21 20 19 23 23 C 1.38289 * 119.96182 * 0.02975 * 22 21 20 24 24 C 1.38101 * 119.98215 * 359.88656 * 23 22 21 25 25 C 1.38367 * 121.81341 * 17.04421 * 20 19 18 26 26 C 1.50774 * 121.40823 * 359.66035 * 25 20 19 27 27 C 1.38636 * 120.50202 * 359.97438 * 12 11 10 28 28 C 1.37623 * 120.24665 * 0.02562 * 27 12 11 29 29 H 0.96996 * 120.00347 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.12634 * 0.25571 * 10 9 7 31 31 H 1.08005 * 119.87197 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.47020 * 210.00094 * 13 12 11 33 33 H 1.08999 * 109.46900 * 329.99464 * 13 12 11 34 34 H 1.00904 * 111.00342 * 58.86233 * 14 13 12 35 35 H 1.08994 * 109.47106 * 60.72698 * 16 15 14 36 36 H 1.09004 * 109.46877 * 180.72283 * 16 15 14 37 37 H 0.96699 * 113.99679 * 179.97438 * 17 16 15 38 38 H 1.09003 * 109.68247 * 64.75259 * 18 15 14 39 39 H 1.08997 * 109.68265 * 185.30953 * 18 15 14 40 40 H 1.08002 * 119.88658 * 0.19420 * 21 20 19 41 41 H 1.08003 * 120.02086 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.00785 * 179.91684 * 23 22 21 43 43 H 1.08003 * 119.84744 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.43348 * 257.72371 * 26 25 20 45 45 H 1.08998 * 109.43934 * 137.84606 * 26 25 20 46 46 H 1.08004 * 119.87966 * 179.97438 * 27 12 11 47 47 H 1.07995 * 120.12983 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0609 -1.2274 0.2403 9 6 1.3365 -2.4161 -0.3130 10 6 0.1867 -2.3960 -1.1239 11 6 -0.4585 -3.5742 -1.4230 12 6 0.0206 -4.7777 -0.9291 13 6 -0.6951 -6.0612 -1.2632 14 7 -0.1366 -6.6260 -2.4989 15 6 -0.8558 -7.8448 -2.8927 16 6 -0.8735 -8.8331 -1.7249 17 8 0.4682 -9.1569 -1.3545 18 6 -0.1633 -8.4859 -4.1023 19 8 -0.0688 -7.5072 -5.1382 20 6 -1.1900 -6.8098 -5.4573 21 6 -1.2255 -6.1283 -6.6700 22 6 -2.3449 -5.4058 -7.0280 23 6 -3.4360 -5.3572 -6.1797 24 6 -3.4051 -6.0338 -4.9761 25 6 -2.2845 -6.7622 -4.6121 26 6 -2.2905 -7.4911 -3.2923 27 6 1.1531 -4.8095 -0.1301 28 6 1.8144 -3.6436 0.1819 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1854 -1.4601 -1.5138 31 1 -1.3409 -3.5613 -2.0455 32 1 -0.5653 -6.7725 -0.4476 33 1 -1.7570 -5.8591 -1.4035 34 1 0.8515 -6.8049 -2.4004 35 1 -1.3863 -8.3825 -0.8753 36 1 -1.3967 -9.7410 -2.0252 37 1 0.5333 -9.7802 -0.6181 38 1 0.8353 -8.8189 -3.8197 39 1 -0.7489 -9.3358 -4.4526 40 1 -0.3738 -6.1653 -7.3332 41 1 -2.3692 -4.8784 -7.9702 42 1 -4.3122 -4.7908 -6.4586 43 1 -4.2585 -5.9947 -4.3154 44 1 -2.8770 -8.4051 -3.3855 45 1 -2.7333 -6.8531 -2.5275 46 1 1.5174 -5.7527 0.2496 47 1 2.6967 -3.6707 0.8041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528646562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:15 Heat of formation + Delta-G solvation = -59.701546 kcal Electronic energy + Delta-G solvation = -29389.317243 eV Core-core repulsion = 25500.667867 eV Total energy + Delta-G solvation = -3888.649376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.85379 -39.69799 -38.94832 -37.95757 -36.47826 -35.54706 -33.71573 -32.14569 -31.19653 -31.11812 -30.46277 -27.82185 -27.08233 -26.77175 -24.82636 -23.48562 -22.88644 -22.64347 -21.64332 -19.91164 -19.20691 -18.91055 -18.25673 -17.41095 -17.23975 -16.92848 -16.79180 -16.18784 -15.87003 -15.78133 -15.42451 -15.28031 -15.11728 -14.89169 -14.49578 -14.26039 -14.23042 -13.90390 -13.80787 -13.74290 -13.33358 -13.30390 -13.08797 -12.93995 -12.76610 -12.59880 -12.42616 -12.18572 -12.08657 -11.95124 -11.73034 -11.41680 -11.25726 -11.18022 -11.04961 -10.87031 -9.64294 -9.33039 -9.29152 -9.09560 -8.93626 -8.60416 -6.33316 0.47463 0.61186 0.96132 1.16834 1.36736 1.49847 1.51162 2.20952 2.43299 2.72018 2.88324 3.11156 3.37953 3.57323 3.70606 3.82006 3.97351 4.10995 4.19882 4.27487 4.29761 4.35354 4.42229 4.47479 4.50941 4.54762 4.57595 4.62419 4.68572 4.71032 4.79528 4.83969 4.91767 5.01162 5.09370 5.17102 5.18782 5.40347 5.46217 5.48321 5.61145 5.67736 5.72885 5.93922 5.97886 6.11766 6.19452 6.29722 6.41028 6.49775 6.64192 6.73028 6.86039 6.95988 7.05938 8.36244 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003235 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.400593 B = 8652.247692 C =10182.130853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.188 4.188 11 C -0.086 4.086 12 C -0.193 4.193 13 C 0.136 3.864 14 N -0.667 5.667 15 C 0.080 3.920 16 C 0.054 3.946 17 O -0.584 6.584 18 C 0.076 3.924 19 O -0.324 6.324 20 C 0.128 3.872 21 C -0.175 4.175 22 C -0.095 4.095 23 C -0.163 4.163 24 C -0.097 4.097 25 C -0.152 4.152 26 C -0.064 4.064 27 C -0.084 4.084 28 C -0.242 4.242 29 H 0.286 0.714 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.341 0.659 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -17.602 -7.958 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.208 4.208 11 C -0.105 4.105 12 C -0.194 4.194 13 C 0.008 3.992 14 N -0.299 5.299 15 C -0.012 4.012 16 C -0.026 4.026 17 O -0.393 6.393 18 C 0.001 3.999 19 O -0.237 6.237 20 C 0.082 3.918 21 C -0.193 4.193 22 C -0.113 4.113 23 C -0.181 4.181 24 C -0.115 4.115 25 C -0.153 4.153 26 C -0.101 4.101 27 C -0.102 4.102 28 C -0.261 4.261 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.249 0.751 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.131 0.869 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.106 -16.640 -8.912 20.543 hybrid contribution 0.578 0.094 1.433 1.548 sum -7.528 -16.546 -7.479 19.656 Atomic orbital electron populations 1.69877 1.08922 1.30290 1.36596 1.26740 0.95551 1.04429 0.91301 0.85206 0.79059 0.75991 0.79439 1.18851 1.19045 1.18213 1.19839 0.97187 0.92339 1.44078 0.90943 1.17951 0.92067 0.93128 0.89190 1.21268 0.99975 0.96932 1.02585 1.20668 0.98520 0.92763 0.98528 1.19337 0.99947 0.94165 1.05957 1.20464 0.97234 0.91694 0.89794 1.60555 1.07394 1.27414 1.34495 1.21662 0.95210 0.89648 0.94697 1.22754 0.84392 0.98361 0.97084 1.86404 1.26633 1.68922 1.57309 1.23087 1.03273 0.88842 0.84720 1.85943 1.32340 1.51033 1.54417 1.18872 0.85933 0.93677 0.93272 1.20809 1.00556 1.02348 0.95625 1.21176 0.92329 0.97373 1.00445 1.21286 0.99860 1.01837 0.95127 1.21162 0.97405 0.95835 0.97073 1.19781 0.94950 1.03904 0.96667 1.20543 0.94846 1.00879 0.93839 1.20658 0.95109 0.96534 0.97920 1.21166 1.03875 0.93537 1.07559 0.90318 0.88544 0.88798 0.94353 0.91550 0.84028 0.92612 0.90658 0.75126 0.87130 0.89738 0.85403 0.83573 0.84014 0.84454 0.87755 0.89875 0.86888 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.36 10.88 21.83 0.24 -45.12 16 2 C 0.03 1.78 5.19 85.26 0.44 2.22 16 3 Si 0.98 39.98 29.58 68.60 2.03 42.01 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.63 9.06 23.46 0.21 -28.42 16 8 H 0.07 3.98 7.89 -2.91 -0.02 3.95 16 9 C 0.08 4.48 5.57 -21.29 -0.12 4.36 16 10 C -0.19 -10.50 8.68 22.73 0.20 -10.30 16 11 C -0.09 -4.21 9.67 22.22 0.21 -4.00 16 12 C -0.19 -8.30 5.44 -19.67 -0.11 -8.41 16 13 C 0.14 4.45 4.96 85.56 0.42 4.87 16 14 N -0.67 -20.47 5.57 -473.35 -2.64 -23.10 16 15 C 0.08 1.79 0.38 3.69 0.00 1.79 16 16 C 0.05 0.90 5.34 71.98 0.38 1.28 16 17 O -0.58 -10.31 12.62 -148.98 -1.88 -12.19 16 18 C 0.08 1.71 5.82 72.12 0.42 2.13 16 19 O -0.32 -9.52 10.02 -91.76 -0.92 -10.44 16 20 C 0.13 3.72 6.38 22.52 0.14 3.86 16 21 C -0.17 -4.77 9.94 22.43 0.22 -4.55 16 22 C -0.10 -2.22 10.04 22.22 0.22 -2.00 16 23 C -0.16 -3.66 10.04 22.25 0.22 -3.44 16 24 C -0.10 -2.29 9.67 22.30 0.22 -2.07 16 25 C -0.15 -3.95 5.64 -19.74 -0.11 -4.07 16 26 C -0.06 -1.36 4.67 29.90 0.14 -1.22 16 27 C -0.08 -3.73 9.67 22.22 0.21 -3.51 16 28 C -0.24 -12.38 9.80 22.73 0.22 -12.16 16 29 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 30 H 0.10 5.68 6.17 -2.91 -0.02 5.66 16 31 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.04 1.14 6.36 -2.39 -0.02 1.13 16 33 H 0.07 2.11 6.14 -2.39 -0.01 2.10 16 34 H 0.34 11.38 8.39 -89.69 -0.75 10.63 16 35 H 0.06 0.96 6.46 -2.39 -0.02 0.94 16 36 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.40 3.58 9.12 -74.06 -0.68 2.91 16 38 H 0.11 2.46 7.64 -2.39 -0.02 2.44 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.10 1.58 8.10 -2.39 -0.02 1.56 16 45 H 0.08 1.85 6.12 -2.39 -0.01 1.83 16 46 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 47 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -68.42 379.31 -0.02 -68.44 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: -0.42 Total: 44.04 kcal Atomic # 6 Polarization: -67.19 SS G_CDS: 3.57 Total: -63.62 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -2.40 Total: -68.23 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -2.80 Total: -22.64 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -68.42 -0.02 -68.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528646562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.736 kcal (2) G-P(sol) polarization free energy of solvation -68.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds