Wall clock time and date at job start Tue Mar 31 2020 23:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00137 * 2 1 4 4 H 1.48500 * 109.47228 * 270.00138 * 3 2 1 5 5 H 1.48500 * 109.47022 * 30.00428 * 3 2 1 6 6 H 1.48498 * 109.47241 * 150.00310 * 3 2 1 7 7 C 1.37878 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99430 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00417 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47331 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47331 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47113 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99887 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00270 * 179.97438 * 13 12 11 16 16 C 1.46507 * 120.00404 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47237 * 179.97438 * 16 15 13 18 18 H 1.09009 * 109.47040 * 60.00225 * 17 16 15 19 19 O 1.42904 * 109.47447 * 300.00568 * 17 16 15 20 20 C 1.53001 * 109.47291 * 179.97438 * 17 16 15 21 21 O 1.42902 * 109.47329 * 185.00184 * 20 17 16 22 22 C 1.35946 * 116.99599 * 180.02562 * 21 20 17 23 23 C 1.38705 * 120.02438 * 179.97438 * 22 21 20 24 24 C 1.38152 * 119.96614 * 179.69405 * 23 22 21 25 25 C 1.38454 * 120.03139 * 0.28380 * 24 23 22 26 26 F 1.35096 * 119.96942 * 179.97438 * 25 24 23 27 27 C 1.38457 * 120.06079 * 359.97015 * 25 24 23 28 28 C 1.38152 * 120.02854 * 0.02562 * 27 25 24 29 29 H 0.97005 * 119.99801 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47244 * 59.99660 * 9 7 2 31 31 H 1.09005 * 109.46707 * 299.99675 * 9 7 2 32 32 H 1.08995 * 109.47365 * 59.99707 * 10 9 7 33 33 H 1.09005 * 109.47046 * 299.99440 * 10 9 7 34 34 H 1.08995 * 109.47115 * 59.99579 * 11 10 9 35 35 H 1.09005 * 109.46618 * 299.99727 * 11 10 9 36 36 H 1.08996 * 109.47822 * 60.00004 * 12 11 10 37 37 H 1.09005 * 109.47046 * 299.99464 * 12 11 10 38 38 H 0.97008 * 120.00220 * 0.02562 * 15 13 12 39 39 H 1.09004 * 109.46243 * 60.00166 * 16 15 13 40 40 H 1.08996 * 109.47138 * 300.00470 * 16 15 13 41 41 H 0.96698 * 113.99653 * 299.99595 * 19 17 16 42 42 H 1.09005 * 109.46624 * 65.00136 * 20 17 16 43 43 H 1.08995 * 109.46914 * 305.00760 * 20 17 16 44 44 H 1.08002 * 120.02027 * 359.97438 * 23 22 21 45 45 H 1.08000 * 119.98455 * 180.29891 * 24 23 22 46 46 H 1.07999 * 119.98352 * 180.02562 * 27 25 24 47 47 H 1.07994 * 120.01250 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5515 -2.6366 -0.0035 12 6 6.0614 -4.0791 -0.0040 13 6 7.5684 -4.0791 -0.0046 14 8 8.1749 -3.0288 -0.0051 15 7 8.2423 -5.2463 -0.0046 16 6 9.7074 -5.2464 -0.0058 17 6 10.2173 -6.6888 -0.0049 18 1 9.8533 -7.2035 -0.8942 19 8 9.7418 -7.3615 1.1628 20 6 11.7474 -6.6889 -0.0067 21 8 12.2235 -8.0312 -0.1233 22 6 13.5713 -8.2087 -0.1397 23 6 14.1019 -9.4854 -0.2502 24 6 15.4716 -9.6638 -0.2731 25 6 16.3146 -8.5694 -0.1800 26 9 17.6539 -8.7454 -0.2020 27 6 15.7863 -7.2949 -0.0644 28 6 14.4169 -7.1136 -0.0413 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 3.6578 -3.1498 -0.8924 33 1 3.6585 -3.1509 0.8876 34 1 5.9156 -2.1232 0.8864 35 1 5.9141 -2.1224 -0.8936 36 1 5.6974 -4.5929 -0.8937 37 1 5.6989 -4.5929 0.8863 38 1 7.7573 -6.0864 -0.0046 39 1 10.0713 -4.7321 0.8838 40 1 10.0701 -4.7329 -0.8962 41 1 10.0278 -6.9573 1.9934 42 1 12.1118 -6.2536 0.9239 43 1 12.1097 -6.1003 -0.8494 44 1 13.4446 -10.3393 -0.3228 45 1 15.8851 -10.6574 -0.3640 46 1 16.4450 -6.4421 0.0078 47 1 14.0051 -6.1193 0.0485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588307070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:52 Heat of formation + Delta-G solvation = -193.902262 kcal Electronic energy + Delta-G solvation = -27059.053872 eV Core-core repulsion = 22733.815892 eV Total energy + Delta-G solvation = -4325.237980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.85109 -41.26883 -40.76962 -39.02227 -37.73464 -36.66975 -35.30076 -34.59027 -32.48385 -32.14387 -31.52093 -30.18996 -28.12103 -26.59431 -24.36924 -23.69052 -23.10264 -22.70003 -21.73090 -21.17543 -19.42331 -18.84864 -18.59249 -18.09568 -17.94193 -17.69223 -17.12334 -16.91354 -16.58672 -16.45699 -16.20458 -16.00108 -15.71547 -15.35599 -15.20841 -14.91686 -14.69313 -14.55759 -14.32389 -14.09756 -13.98815 -13.69059 -13.48767 -13.47124 -13.39881 -13.17160 -12.82323 -12.32080 -12.21125 -12.05666 -11.89392 -11.74977 -11.74449 -11.50639 -11.33477 -11.29445 -11.25432 -10.78795 -10.75318 -10.21964 -10.12750 -9.15227 -8.29057 -6.32258 0.12956 0.16333 1.35414 1.36951 1.49696 1.66017 1.77985 2.36612 2.39439 2.53443 3.06603 3.30352 3.36094 3.58526 3.66818 3.75188 3.80074 3.90987 3.94591 4.06362 4.10574 4.17048 4.25854 4.27324 4.37225 4.56951 4.61213 4.66842 4.71304 4.80009 4.87719 4.88687 4.92402 5.09538 5.12875 5.16659 5.18127 5.21380 5.28412 5.41466 5.62084 5.66030 5.67123 5.69716 6.29621 6.30364 6.53197 6.70818 6.75998 7.26558 7.32827 8.87643 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.039446 B = 0.001254 C = 0.001223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.658479 B =22314.523134 C =22895.379847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.532 4.532 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.133 4.133 13 C 0.515 3.485 14 O -0.585 6.585 15 N -0.715 5.715 16 C 0.091 3.909 17 C 0.114 3.886 18 H 0.118 0.882 19 O -0.562 6.562 20 C 0.024 3.976 21 O -0.314 6.314 22 C 0.113 3.887 23 C -0.131 4.131 24 C -0.113 4.113 25 C 0.035 3.965 26 F -0.152 7.152 27 C -0.116 4.116 28 C -0.183 4.183 29 H 0.266 0.734 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.418 0.582 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.390 0.610 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.152 0.848 45 H 0.158 0.842 46 H 0.152 0.848 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.497 -21.660 0.245 41.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.054 4.054 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.172 4.172 13 C 0.303 3.697 14 O -0.465 6.465 15 N -0.369 5.369 16 C -0.034 4.034 17 C 0.054 3.946 18 H 0.135 0.865 19 O -0.369 6.369 20 C -0.051 4.051 21 O -0.227 6.227 22 C 0.067 3.933 23 C -0.150 4.150 24 C -0.131 4.131 25 C 0.016 3.984 26 F -0.131 7.131 27 C -0.135 4.135 28 C -0.202 4.202 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.255 0.745 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.240 0.760 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.170 0.830 45 H 0.176 0.824 46 H 0.170 0.830 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 35.412 -21.356 -0.201 41.353 hybrid contribution 0.227 1.096 0.345 1.171 sum 35.638 -20.260 0.144 40.995 Atomic orbital electron populations 1.70064 1.08180 1.28082 1.52903 1.25985 0.95576 1.03381 0.94222 0.85694 0.79408 0.78595 0.79182 1.19218 1.20751 1.17530 1.21570 0.92209 0.93219 1.50024 0.94531 1.19575 0.93817 0.95932 0.96108 1.21349 0.93912 0.96692 1.01310 1.21277 0.94662 0.95793 1.01802 1.21678 0.90004 0.99040 1.06525 1.21076 0.91049 0.83166 0.74438 1.90694 1.71391 1.33108 1.51339 1.45750 1.06925 1.08953 1.75222 1.21892 0.80985 0.96767 1.03716 1.21960 0.90549 0.91264 0.90824 0.86474 1.86639 1.76791 1.57010 1.16466 1.23627 0.95203 0.82102 1.04207 1.86116 1.18456 1.30160 1.87991 1.19231 0.82817 0.94527 0.96741 1.20517 0.94489 0.95951 1.04040 1.21189 0.92512 0.99384 1.00062 1.17891 0.77184 0.95246 1.08063 1.91472 1.30747 1.96315 1.94525 1.21197 0.96021 0.96342 0.99896 1.21363 0.92964 0.99577 1.06281 0.92526 0.96760 0.96874 0.92498 0.92522 0.92974 0.92888 0.86685 0.86741 0.74471 0.90708 0.90285 0.75989 0.89448 0.89074 0.83000 0.82416 0.83006 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 2 C 0.00 0.30 5.47 84.66 0.46 0.76 16 3 Si 0.95 45.63 27.47 68.60 1.88 47.51 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 7 C -0.53 -31.29 9.66 25.60 0.25 -31.04 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 9 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 10 C -0.10 -3.59 5.15 30.59 0.16 -3.43 16 11 C -0.10 -3.04 4.50 30.59 0.14 -2.90 16 12 C -0.13 -2.85 5.70 29.85 0.17 -2.68 16 13 C 0.51 11.54 7.83 87.66 0.69 12.23 16 14 O -0.59 -18.45 15.98 -3.03 -0.05 -18.49 16 15 N -0.72 -9.98 5.45 -463.06 -2.52 -12.50 16 16 C 0.09 0.94 5.34 86.38 0.46 1.41 16 17 C 0.11 0.82 3.33 30.59 0.10 0.92 16 18 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 19 O -0.56 -5.28 13.05 -144.37 -1.88 -7.16 16 20 C 0.02 0.14 4.38 71.98 0.31 0.46 16 21 O -0.31 -3.59 10.10 -88.34 -0.89 -4.48 16 22 C 0.11 1.28 6.69 22.49 0.15 1.43 16 23 C -0.13 -1.41 9.98 22.36 0.22 -1.18 16 24 C -0.11 -1.19 10.02 22.30 0.22 -0.97 16 25 C 0.04 0.46 7.30 22.37 0.16 0.62 16 26 F -0.15 -2.36 17.27 44.97 0.78 -1.58 16 27 C -0.12 -1.21 10.02 22.30 0.22 -0.98 16 28 C -0.18 -1.68 9.04 22.36 0.20 -1.47 16 29 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 30 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 31 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.05 1.76 8.10 -2.38 -0.02 1.74 16 36 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 2.00 8.14 -2.38 -0.02 1.99 16 38 H 0.42 4.08 8.35 -92.70 -0.77 3.31 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.39 1.49 9.05 -74.06 -0.67 0.82 16 42 H 0.09 0.26 7.65 -2.38 -0.02 0.24 16 43 H 0.09 0.32 7.67 -2.39 -0.02 0.30 16 44 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 46 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.16 0.71 6.30 -2.91 -0.02 0.69 16 Total: -1.00 -79.31 399.93 1.15 -78.15 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -0.51 Total: 6.27 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.05 Total: -27.53 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -2.22 Total: -72.70 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -2.83 Total: -30.14 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.78 Total: -1.58 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -79.31 1.15 -78.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588307070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.748 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds