Wall clock time and date at job start Tue Mar 31 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00193 * 2 1 4 4 C 1.50698 * 109.47230 * 270.41239 * 3 2 1 5 5 N 1.30520 * 126.34886 * 273.87876 * 4 3 2 6 6 N 1.28596 * 109.67337 * 179.82077 * 5 4 3 7 7 C 1.30518 * 109.67515 * 0.44721 * 6 5 4 8 8 N 1.35495 * 126.34463 * 94.18395 * 4 3 2 9 9 C 1.46497 * 126.98150 * 0.02562 * 8 4 3 10 10 C 1.34776 * 119.99943 * 180.02562 * 2 1 3 11 11 O 1.21673 * 120.00188 * 184.16409 * 10 2 1 12 12 C 1.46891 * 120.00209 * 4.17015 * 10 2 1 13 13 C 1.36127 * 125.43306 * 1.03482 * 12 10 2 14 14 C 1.41704 * 107.74269 * 180.24309 * 13 12 10 15 15 C 1.40026 * 133.34644 * 179.82044 * 14 13 12 16 16 C 1.36577 * 119.83111 * 179.97438 * 15 14 13 17 17 C 1.38857 * 120.59545 * 0.02562 * 16 15 14 18 18 C 1.37839 * 120.63783 * 359.97438 * 17 16 15 19 19 C 1.39091 * 119.81438 * 0.02562 * 18 17 16 20 20 N 1.37836 * 133.16308 * 180.02562 * 19 18 17 21 21 C 1.36887 * 125.62085 * 359.94438 * 20 19 18 22 22 H 1.07998 * 120.00087 * 140.70247 * 21 20 19 23 23 C 1.39012 * 119.99947 * 320.69952 * 21 20 19 24 24 N 1.31348 * 119.99866 * 337.54205 * 23 21 20 25 25 Si 1.86800 * 119.99779 * 157.27005 * 23 21 20 26 26 H 1.48505 * 109.47020 * 185.26939 * 25 23 21 27 27 H 1.48504 * 109.47028 * 305.26505 * 25 23 21 28 28 H 1.48496 * 109.47360 * 65.27042 * 25 23 21 29 29 H 1.09011 * 109.46756 * 236.59611 * 1 2 3 30 30 H 1.08999 * 109.46769 * 356.59551 * 1 2 3 31 31 H 1.08994 * 109.46963 * 116.60068 * 1 2 3 32 32 H 1.08997 * 109.46996 * 30.41059 * 3 2 1 33 33 H 1.09000 * 109.47041 * 150.40968 * 3 2 1 34 34 H 1.07995 * 126.35112 * 179.72522 * 7 6 5 35 35 H 1.09005 * 109.47134 * 95.19447 * 9 8 4 36 36 H 1.09007 * 109.47156 * 215.19379 * 9 8 4 37 37 H 1.08998 * 109.46945 * 335.19247 * 9 8 4 38 38 H 1.07998 * 126.12551 * 0.02562 * 13 12 10 39 39 H 1.08004 * 120.08330 * 359.93706 * 15 14 13 40 40 H 1.07992 * 119.69846 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.67853 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.09373 * 180.02562 * 18 17 16 43 43 H 0.96996 * 120.00425 * 354.02100 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4399 1.7089 -1.4208 5 7 3.4389 1.3524 -2.1813 6 7 3.3280 1.9137 -3.3330 7 6 2.2583 2.6612 -3.3563 8 7 1.6641 2.5526 -2.1434 9 6 0.4332 3.2135 -1.7028 10 6 2.1389 -1.1672 -0.0005 11 8 3.3532 -1.1687 0.0760 12 6 1.4074 -2.4376 -0.0936 13 6 0.0565 -2.5642 -0.2037 14 6 -0.2444 -3.9478 -0.2602 15 6 -1.4406 -4.6676 -0.3688 16 6 -1.4115 -6.0327 -0.4002 17 6 -0.2050 -6.7159 -0.3249 18 6 0.9855 -6.0294 -0.2176 19 6 0.9812 -4.6389 -0.1836 20 7 1.9809 -3.6951 -0.0848 21 6 3.3206 -3.9597 0.0109 22 1 4.0323 -3.3400 -0.5143 23 6 3.7649 -5.0260 0.7841 24 7 3.0079 -5.4988 1.7478 25 14 5.4353 -5.7915 0.4476 26 1 5.6184 -6.9818 1.3165 27 1 5.5137 -6.2021 -0.9773 28 1 6.5017 -4.7992 0.7363 29 1 -0.3633 -0.5658 0.8580 30 1 -0.3633 1.0259 0.0610 31 1 -0.3633 -0.4601 -0.9188 32 1 1.6117 2.0265 0.5202 33 1 3.1531 1.1365 0.5075 34 1 1.9111 3.2561 -4.1881 35 1 0.6684 4.2132 -1.3373 36 1 -0.2599 3.2868 -2.5409 37 1 -0.0246 2.6324 -0.9023 38 1 -0.6582 -1.7552 -0.2379 39 1 -2.3838 -4.1447 -0.4269 40 1 -2.3353 -6.5857 -0.4845 41 1 -0.1992 -7.7955 -0.3516 42 1 1.9189 -6.5696 -0.1600 43 1 2.1787 -5.0509 1.9773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588783650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:40 Heat of formation + Delta-G solvation = 140.113161 kcal Electronic energy + Delta-G solvation = -29544.735413 eV Core-core repulsion = 25593.503061 eV Total energy + Delta-G solvation = -3951.232352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.12716 -40.71970 -38.87867 -36.11559 -35.57431 -34.97408 -33.79679 -31.69839 -30.50969 -29.02893 -28.73212 -27.94638 -27.13954 -26.17096 -24.55385 -22.78902 -22.38651 -21.21835 -20.67568 -20.10020 -19.22092 -18.05686 -17.34525 -16.71348 -16.17944 -15.88244 -15.63388 -15.45072 -15.18932 -14.92428 -14.32527 -14.06904 -13.89159 -13.71916 -13.59831 -13.41891 -13.06040 -12.95937 -12.79774 -12.55765 -12.28897 -12.22559 -11.89539 -11.46871 -11.17885 -11.01105 -10.87526 -10.48276 -10.33005 -10.30414 -10.27023 -10.18124 -9.82426 -9.48626 -9.11536 -9.00834 -8.77088 -8.59854 -7.45350 -6.99606 -6.73059 -4.39328 1.63314 1.73874 2.32816 2.65193 2.79566 3.01220 3.22561 3.26768 3.29697 3.44381 4.01007 4.09252 4.21561 4.32810 4.44200 4.51213 4.63843 4.68096 4.79906 4.83227 4.96087 5.08304 5.30009 5.35622 5.56159 5.58278 5.70848 5.72059 5.82255 5.86479 6.01872 6.08673 6.21532 6.42103 6.53117 6.61209 6.73220 6.76188 6.89836 6.99818 7.35309 7.44292 7.51334 7.57453 7.82819 7.87540 7.95648 8.26530 8.74576 8.77363 8.89687 9.17593 10.19649 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.004115 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.097452 B = 6803.416319 C = 8374.176097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.617 5.617 3 C 0.209 3.791 4 C 0.160 3.840 5 N -0.264 5.264 6 N -0.298 5.298 7 C 0.143 3.857 8 N -0.477 5.477 9 C 0.070 3.930 10 C 0.587 3.413 11 O -0.506 6.506 12 C -0.026 4.026 13 C -0.235 4.235 14 C -0.121 4.121 15 C -0.091 4.091 16 C -0.154 4.154 17 C -0.147 4.147 18 C -0.068 4.068 19 C 0.047 3.953 20 N -0.232 5.232 21 C -0.405 4.405 22 H 0.115 0.885 23 C 0.024 3.976 24 N -0.824 5.824 25 Si 1.079 2.921 26 H -0.273 1.273 27 H -0.275 1.275 28 H -0.274 1.274 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.217 0.783 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.150 0.850 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 14.701 -3.147 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.353 5.353 3 C 0.083 3.917 4 C -0.109 4.109 5 N -0.104 5.104 6 N -0.138 5.138 7 C -0.144 4.144 8 N -0.169 5.169 9 C -0.073 4.073 10 C 0.379 3.621 11 O -0.379 6.379 12 C -0.143 4.143 13 C -0.261 4.261 14 C -0.126 4.126 15 C -0.110 4.110 16 C -0.173 4.173 17 C -0.168 4.168 18 C -0.088 4.088 19 C -0.067 4.067 20 N 0.108 4.892 21 C -0.534 4.534 22 H 0.132 0.868 23 C -0.191 4.191 24 N -0.451 5.451 25 Si 0.901 3.099 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.200 1.200 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.167 0.833 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.107 12.725 -3.016 14.884 hybrid contribution -2.540 2.096 -0.177 3.298 sum -9.648 14.820 -3.194 17.970 Atomic orbital electron populations 1.22452 0.79794 1.01327 1.03175 1.47445 1.06527 1.04474 1.76884 1.19567 1.00617 0.85454 0.86105 1.25614 0.91058 0.95140 0.99113 1.74447 1.19315 1.18900 0.97786 1.74335 1.16108 1.09193 1.14141 1.26432 0.94390 1.03902 0.89677 1.46262 1.22033 1.36099 1.12501 1.22164 0.84138 0.98393 1.02652 1.17257 0.86485 0.82308 0.76066 1.90829 1.13200 1.86484 1.47391 1.19528 0.91734 0.86227 1.16854 1.21355 0.93386 0.95389 1.16000 1.17987 0.92615 0.93231 1.08741 1.20044 0.95446 0.93492 1.01992 1.20315 0.96941 0.94047 1.05984 1.20549 0.91996 0.98386 1.05844 1.20252 0.98253 0.90931 0.99364 1.18362 0.87659 0.91056 1.09580 1.40114 1.05278 1.01821 1.41975 1.21015 0.80375 1.18721 1.33270 0.86758 1.26920 1.06280 0.94233 0.91630 1.70628 1.13728 1.39188 1.21531 0.83382 0.72576 0.76819 0.77078 1.19727 1.20089 1.19953 0.90181 0.92131 0.91028 0.88864 0.86194 0.76701 0.89879 0.88990 0.89046 0.83296 0.87784 0.87764 0.87346 0.86383 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 8.55 59.85 0.51 1.37 16 2 N -0.62 -9.81 2.86 -184.43 -0.53 -10.33 16 3 C 0.21 2.78 5.62 -5.19 -0.03 2.75 16 4 C 0.16 2.34 7.61 -154.99 -1.18 1.16 16 5 N -0.26 -5.08 12.21 32.80 0.40 -4.68 16 6 N -0.30 -5.13 12.21 29.69 0.36 -4.77 16 7 C 0.14 1.66 12.74 -89.94 -1.15 0.51 16 8 N -0.48 -4.97 3.15 -122.69 -0.39 -5.36 16 9 C 0.07 0.32 10.95 59.85 0.66 0.97 16 10 C 0.59 13.06 7.64 -12.76 -0.10 12.96 16 11 O -0.51 -13.08 14.53 5.21 0.08 -13.01 16 12 C -0.03 -0.63 6.73 -82.25 -0.55 -1.18 16 13 C -0.23 -4.89 8.78 -39.02 -0.34 -5.23 16 14 C -0.12 -2.74 6.16 -106.89 -0.66 -3.40 16 15 C -0.09 -1.77 10.06 -39.51 -0.40 -2.17 16 16 C -0.15 -2.90 9.97 -39.95 -0.40 -3.30 16 17 C -0.15 -3.02 10.02 -39.50 -0.40 -3.42 16 18 C -0.07 -1.65 8.59 -39.41 -0.34 -1.99 16 19 C 0.05 1.21 5.50 -83.84 -0.46 0.75 16 20 N -0.23 -6.25 2.59 -56.08 -0.15 -6.40 16 21 C -0.40 -11.40 8.71 -15.01 -0.13 -11.53 16 22 H 0.11 3.38 6.97 -52.49 -0.37 3.02 16 23 C 0.02 0.64 4.24 -17.47 -0.07 0.57 16 24 N -0.82 -22.86 11.94 55.50 0.66 -22.20 16 25 Si 1.08 23.56 29.98 -169.99 -5.10 18.47 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 H 0.08 0.95 6.66 -51.92 -0.35 0.61 16 30 H 0.06 0.42 5.91 -51.93 -0.31 0.11 16 31 H 0.07 0.88 6.26 -51.93 -0.33 0.55 16 32 H 0.09 0.77 7.29 -51.93 -0.38 0.39 16 33 H 0.12 1.84 7.36 -51.93 -0.38 1.46 16 34 H 0.22 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.09 0.35 5.59 -51.93 -0.29 0.06 16 38 H 0.15 2.40 3.83 -52.49 -0.20 2.20 16 39 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 42 H 0.12 2.97 6.64 -52.49 -0.35 2.62 16 43 H 0.29 8.33 7.15 -40.82 -0.29 8.04 16 LS Contribution 354.85 15.07 5.35 5.35 Total: -1.00 -37.85 354.85 -8.91 -46.76 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.57 Total: 7.34 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -5.04 Total: -11.17 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.37 Total: -53.74 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.10 Total: 18.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.85 -8.91 -46.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588783650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.870 kcal (2) G-P(sol) polarization free energy of solvation -37.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds