Wall clock time and date at job start Tue Mar 31 2020 22:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00193 * 2 1 4 4 C 1.50698 * 109.47230 * 270.41239 * 3 2 1 5 5 N 1.30520 * 126.34886 * 273.87876 * 4 3 2 6 6 N 1.28596 * 109.67337 * 179.82077 * 5 4 3 7 7 C 1.30518 * 109.67515 * 0.44721 * 6 5 4 8 8 N 1.35495 * 126.34463 * 94.18395 * 4 3 2 9 9 C 1.46497 * 126.98150 * 0.02562 * 8 4 3 10 10 C 1.34776 * 119.99943 * 180.02562 * 2 1 3 11 11 O 1.21673 * 120.00188 * 184.16409 * 10 2 1 12 12 C 1.46891 * 120.00209 * 4.17015 * 10 2 1 13 13 C 1.36127 * 125.43306 * 1.03482 * 12 10 2 14 14 C 1.41704 * 107.74269 * 180.24309 * 13 12 10 15 15 C 1.40026 * 133.34644 * 179.82044 * 14 13 12 16 16 C 1.36577 * 119.83111 * 179.97438 * 15 14 13 17 17 C 1.38857 * 120.59545 * 0.02562 * 16 15 14 18 18 C 1.37839 * 120.63783 * 359.97438 * 17 16 15 19 19 C 1.39091 * 119.81438 * 0.02562 * 18 17 16 20 20 N 1.37836 * 133.16308 * 180.02562 * 19 18 17 21 21 C 1.36887 * 125.62085 * 359.94438 * 20 19 18 22 22 H 1.07998 * 120.00087 * 140.70247 * 21 20 19 23 23 C 1.39012 * 119.99947 * 320.69952 * 21 20 19 24 24 N 1.31348 * 119.99866 * 337.54205 * 23 21 20 25 25 Si 1.86800 * 119.99779 * 157.27005 * 23 21 20 26 26 H 1.48505 * 109.47020 * 185.26939 * 25 23 21 27 27 H 1.48504 * 109.47028 * 305.26505 * 25 23 21 28 28 H 1.48496 * 109.47360 * 65.27042 * 25 23 21 29 29 H 1.09011 * 109.46756 * 236.59611 * 1 2 3 30 30 H 1.08999 * 109.46769 * 356.59551 * 1 2 3 31 31 H 1.08994 * 109.46963 * 116.60068 * 1 2 3 32 32 H 1.08997 * 109.46996 * 30.41059 * 3 2 1 33 33 H 1.09000 * 109.47041 * 150.40968 * 3 2 1 34 34 H 1.07995 * 126.35112 * 179.72522 * 7 6 5 35 35 H 1.09005 * 109.47134 * 95.19447 * 9 8 4 36 36 H 1.09007 * 109.47156 * 215.19379 * 9 8 4 37 37 H 1.08998 * 109.46945 * 335.19247 * 9 8 4 38 38 H 1.07998 * 126.12551 * 0.02562 * 13 12 10 39 39 H 1.08004 * 120.08330 * 359.93706 * 15 14 13 40 40 H 1.07992 * 119.69846 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.67853 * 180.02562 * 17 16 15 42 42 H 1.08000 * 120.09373 * 180.02562 * 18 17 16 43 43 H 0.96996 * 120.00425 * 354.02100 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4399 1.7089 -1.4208 5 7 3.4389 1.3524 -2.1813 6 7 3.3280 1.9137 -3.3330 7 6 2.2583 2.6612 -3.3563 8 7 1.6641 2.5526 -2.1434 9 6 0.4332 3.2135 -1.7028 10 6 2.1389 -1.1672 -0.0005 11 8 3.3532 -1.1687 0.0760 12 6 1.4074 -2.4376 -0.0936 13 6 0.0565 -2.5642 -0.2037 14 6 -0.2444 -3.9478 -0.2602 15 6 -1.4406 -4.6676 -0.3688 16 6 -1.4115 -6.0327 -0.4002 17 6 -0.2050 -6.7159 -0.3249 18 6 0.9855 -6.0294 -0.2176 19 6 0.9812 -4.6389 -0.1836 20 7 1.9809 -3.6951 -0.0848 21 6 3.3206 -3.9597 0.0109 22 1 4.0323 -3.3400 -0.5143 23 6 3.7649 -5.0260 0.7841 24 7 3.0079 -5.4988 1.7478 25 14 5.4353 -5.7915 0.4476 26 1 5.6184 -6.9818 1.3165 27 1 5.5137 -6.2021 -0.9773 28 1 6.5017 -4.7992 0.7363 29 1 -0.3633 -0.5658 0.8580 30 1 -0.3633 1.0259 0.0610 31 1 -0.3633 -0.4601 -0.9188 32 1 1.6117 2.0265 0.5202 33 1 3.1531 1.1365 0.5075 34 1 1.9111 3.2561 -4.1881 35 1 0.6684 4.2132 -1.3373 36 1 -0.2599 3.2868 -2.5409 37 1 -0.0246 2.6324 -0.9023 38 1 -0.6582 -1.7552 -0.2379 39 1 -2.3838 -4.1447 -0.4269 40 1 -2.3353 -6.5857 -0.4845 41 1 -0.1992 -7.7955 -0.3516 42 1 1.9189 -6.5696 -0.1600 43 1 2.1787 -5.0509 1.9773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588783650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:39 Heat of formation + Delta-G solvation = 115.156323 kcal Electronic energy + Delta-G solvation = -29545.817623 eV Core-core repulsion = 25593.503061 eV Total energy + Delta-G solvation = -3952.314562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.12359 -42.43969 -40.43196 -37.73086 -37.02963 -35.97113 -35.56310 -32.96188 -32.16654 -30.73573 -30.14036 -28.82068 -28.13062 -27.48364 -26.45483 -24.31253 -23.32359 -22.76726 -21.96807 -21.78211 -20.74583 -19.80745 -18.19640 -17.84734 -17.70682 -17.42421 -17.17597 -16.77975 -16.36805 -16.14810 -15.93068 -15.68459 -15.34093 -15.04744 -14.83161 -14.61223 -14.46771 -14.22490 -13.96603 -13.92847 -13.78319 -13.49861 -13.19261 -12.89731 -12.56579 -12.50866 -12.42964 -12.18263 -12.04280 -11.92183 -11.46997 -11.30387 -11.10052 -10.98946 -10.91844 -10.54187 -10.38911 -9.94418 -9.38817 -8.82747 -8.51304 -6.45491 0.03525 0.69645 0.98220 1.29760 1.38634 1.47916 1.59834 1.66392 1.70145 2.03942 2.24508 2.42143 2.77790 2.97731 3.22392 3.26352 3.57327 3.73563 3.84624 3.94343 4.14500 4.16507 4.33591 4.35254 4.42299 4.45245 4.57883 4.62356 4.64805 4.67226 4.73963 4.82709 4.89833 4.92833 5.05275 5.14211 5.19573 5.32533 5.41115 5.51774 5.75611 5.76703 5.84682 5.97849 6.03201 6.13057 6.31362 6.47816 6.91990 7.17232 7.29414 7.74166 8.12851 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.004115 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.097452 B = 6803.416319 C = 8374.176097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.601 5.601 3 C 0.208 3.792 4 C 0.155 3.845 5 N -0.341 5.341 6 N -0.363 5.363 7 C 0.167 3.833 8 N -0.463 5.463 9 C 0.056 3.944 10 C 0.577 3.423 11 O -0.562 6.562 12 C -0.058 4.058 13 C -0.198 4.198 14 C -0.148 4.148 15 C -0.075 4.075 16 C -0.155 4.155 17 C -0.125 4.125 18 C -0.120 4.120 19 C 0.030 3.970 20 N -0.276 5.276 21 C -0.435 4.435 22 H 0.077 0.923 23 C -0.008 4.008 24 N -0.845 5.845 25 Si 1.120 2.880 26 H -0.259 1.259 27 H -0.267 1.267 28 H -0.271 1.271 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.158 0.842 33 H 0.087 0.913 34 H 0.267 0.733 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.204 0.796 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.153 17.004 -3.695 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.335 5.335 3 C 0.083 3.917 4 C -0.116 4.116 5 N -0.181 5.181 6 N -0.202 5.202 7 C -0.122 4.122 8 N -0.154 5.154 9 C -0.084 4.084 10 C 0.368 3.632 11 O -0.440 6.440 12 C -0.173 4.173 13 C -0.224 4.224 14 C -0.153 4.153 15 C -0.094 4.094 16 C -0.174 4.174 17 C -0.145 4.145 18 C -0.140 4.140 19 C -0.084 4.084 20 N 0.061 4.939 21 C -0.563 4.563 22 H 0.095 0.905 23 C -0.216 4.216 24 N -0.473 5.473 25 Si 0.937 3.063 26 H -0.183 1.183 27 H -0.192 1.192 28 H -0.196 1.196 29 H 0.100 0.900 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.105 0.895 34 H 0.283 0.717 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.221 0.779 39 H 0.171 0.829 40 H 0.171 0.829 41 H 0.153 0.847 42 H 0.108 0.892 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.896 15.094 -3.564 20.171 hybrid contribution -1.158 1.587 -0.125 1.968 sum -14.054 16.681 -3.689 22.122 Atomic orbital electron populations 1.22753 0.76541 1.05663 1.02976 1.47419 1.08480 1.03286 1.74311 1.19846 1.00317 0.85481 0.86067 1.25547 0.91095 0.95779 0.99210 1.74316 1.22658 1.21629 0.99470 1.74179 1.19686 1.11981 1.14393 1.27324 0.92397 1.01650 0.90849 1.46494 1.22837 1.34725 1.11310 1.22722 0.82002 0.99264 1.04405 1.17473 0.86050 0.83843 0.75871 1.90794 1.15600 1.87503 1.50126 1.20310 0.93535 0.86411 1.17028 1.22113 0.92700 0.96295 1.11318 1.18569 0.92885 0.94022 1.09842 1.20592 0.95867 0.93948 0.98951 1.20840 0.97771 0.94279 1.04522 1.21029 0.91529 0.99925 1.02030 1.20295 0.98830 0.90976 1.03913 1.18958 0.88728 0.91837 1.08893 1.40240 1.05043 1.03177 1.45453 1.20658 0.81376 1.19640 1.34653 0.90488 1.28089 1.08553 0.94353 0.90629 1.70740 1.13542 1.40074 1.22933 0.82918 0.69270 0.76553 0.77561 1.18325 1.19183 1.19591 0.90043 0.85871 0.91166 0.82411 0.89479 0.71733 0.87372 0.86210 0.87540 0.77921 0.82915 0.82920 0.84651 0.89249 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 8.55 127.77 1.09 2.21 16 2 N -0.60 -18.40 2.86 -855.64 -2.44 -20.84 16 3 C 0.21 5.28 5.62 85.63 0.48 5.76 16 4 C 0.15 4.43 7.61 137.98 1.05 5.48 16 5 N -0.34 -13.77 12.21 -50.16 -0.61 -14.38 16 6 N -0.36 -12.83 12.21 -59.99 -0.73 -13.56 16 7 C 0.17 3.47 12.74 180.11 2.30 5.76 16 8 N -0.46 -8.07 3.15 -542.07 -1.71 -9.78 16 9 C 0.06 0.17 10.95 127.77 1.40 1.56 16 10 C 0.58 26.95 7.64 86.51 0.66 27.61 16 11 O -0.56 -31.97 14.53 -4.26 -0.06 -32.03 16 12 C -0.06 -2.88 6.73 39.91 0.27 -2.61 16 13 C -0.20 -7.92 8.78 22.63 0.20 -7.72 16 14 C -0.15 -6.50 6.16 -21.33 -0.13 -6.63 16 15 C -0.08 -2.59 10.06 22.31 0.22 -2.36 16 16 C -0.16 -5.17 9.97 22.03 0.22 -4.95 16 17 C -0.12 -4.95 10.02 22.32 0.22 -4.72 16 18 C -0.12 -6.02 8.59 22.38 0.19 -5.83 16 19 C 0.03 1.57 5.50 39.06 0.21 1.78 16 20 N -0.28 -15.98 2.59 -331.34 -0.86 -16.84 16 21 C -0.44 -27.06 8.71 84.09 0.73 -26.33 16 22 H 0.08 5.17 6.97 -2.91 -0.02 5.15 16 23 C -0.01 -0.47 4.24 84.95 0.36 -0.11 16 24 N -0.85 -50.61 11.94 21.67 0.26 -50.35 16 25 Si 1.12 51.66 29.98 68.60 2.06 53.72 16 26 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H 0.08 1.55 6.66 -2.38 -0.02 1.53 16 30 H 0.12 0.76 5.91 -2.39 -0.01 0.75 16 31 H 0.07 1.36 6.26 -2.39 -0.01 1.35 16 32 H 0.16 1.85 7.29 -2.39 -0.02 1.84 16 33 H 0.09 2.83 7.36 -2.39 -0.02 2.82 16 34 H 0.27 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.11 -0.11 8.14 -2.38 -0.02 -0.13 16 36 H 0.12 -0.20 8.14 -2.38 -0.02 -0.22 16 37 H 0.11 0.01 5.59 -2.39 -0.01 0.00 16 38 H 0.20 5.60 3.83 -2.91 -0.01 5.59 16 39 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 40 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.09 4.89 6.64 -2.91 -0.02 4.87 16 43 H 0.27 16.72 7.15 -92.71 -0.66 16.05 16 Total: -1.00 -100.99 354.85 6.56 -94.42 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 1.18 Total: 20.72 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 9.48 Total: -11.08 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -6.10 Total: -125.75 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.06 Total: -32.03 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.06 Total: 53.72 kcal Total: -100.99 6.56 -94.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588783650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.580 kcal (2) G-P(sol) polarization free energy of solvation -100.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds