Wall clock time and date at job start Tue Mar 31 2020 23:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99508 * 2 1 4 4 H 1.48498 * 109.46593 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47414 * 300.00298 * 3 2 1 6 6 H 1.48502 * 109.46853 * 60.00249 * 3 2 1 7 7 C 1.37874 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47316 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47156 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99967 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99944 * 5.08264 * 12 11 10 14 14 N 1.34769 * 120.00070 * 185.08291 * 12 11 10 15 15 C 1.47076 * 120.88332 * 175.00203 * 14 12 11 16 16 C 1.53239 * 108.52792 * 231.16533 * 15 14 12 17 17 N 1.46905 * 109.33811 * 306.17123 * 16 15 14 18 18 C 1.40016 * 110.99925 * 187.25198 * 17 16 15 19 19 C 1.38995 * 120.08678 * 299.71922 * 18 17 16 20 20 F 1.35106 * 120.03923 * 0.02671 * 19 18 17 21 21 C 1.38324 * 119.91820 * 179.77031 * 19 18 17 22 22 C 1.38282 * 120.08009 * 0.51233 * 21 19 18 23 23 C 1.38268 * 120.17430 * 359.74500 * 22 21 19 24 24 C 1.38335 * 120.08530 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.04225 * 180.02562 * 24 23 22 26 26 C 1.46905 * 111.26759 * 63.10232 * 17 16 15 27 27 C 1.47079 * 120.88168 * 354.98498 * 14 12 11 28 28 H 0.96996 * 120.00530 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47174 * 59.99588 * 9 7 2 30 30 H 1.09010 * 109.46744 * 299.99734 * 9 7 2 31 31 H 1.09000 * 109.46973 * 59.99339 * 10 9 7 32 32 H 1.09002 * 109.47066 * 299.99851 * 10 9 7 33 33 H 0.97003 * 120.00143 * 0.02562 * 11 10 9 34 34 H 1.08999 * 109.62879 * 111.45226 * 15 14 12 35 35 H 1.08999 * 109.78773 * 350.97094 * 15 14 12 36 36 H 1.09001 * 109.49679 * 186.21089 * 16 15 14 37 37 H 1.08999 * 109.49159 * 66.12315 * 16 15 14 38 38 H 1.07998 * 119.96260 * 180.27380 * 21 19 18 39 39 H 1.08004 * 119.90933 * 179.76486 * 22 21 19 40 40 H 1.07998 * 119.96005 * 180.02562 * 23 22 21 41 41 H 1.08992 * 109.49297 * 56.85556 * 26 17 16 42 42 H 1.09003 * 109.49046 * 176.93641 * 26 17 16 43 43 H 1.09001 * 109.62693 * 248.54256 * 27 14 12 44 44 H 1.09001 * 109.63198 * 9.12203 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5131 -4.9307 -0.0020 12 6 2.1870 -6.0979 -0.0024 13 8 3.3993 -6.1000 0.0910 14 7 1.5172 -7.2628 -0.1063 15 6 2.2373 -8.5403 -0.2185 16 6 1.6826 -9.3077 -1.4233 17 7 0.2240 -9.4261 -1.2950 18 6 -0.3011 -10.2602 -2.2896 19 6 -0.1363 -9.9345 -3.6307 20 9 0.5316 -8.8122 -3.9770 21 6 -0.6524 -10.7634 -4.6105 22 6 -1.3407 -11.9094 -4.2568 23 6 -1.5113 -12.2341 -2.9236 24 6 -0.9931 -11.4132 -1.9381 25 9 -1.1599 -11.7315 -0.6359 26 6 -0.4219 -8.1069 -1.3192 27 6 0.0467 -7.2903 -0.1101 28 1 -0.4851 0.8400 0.0004 29 1 0.6249 -2.5563 -0.8919 30 1 0.6242 -2.5575 0.8881 31 1 2.8715 -3.6046 0.8890 32 1 2.8728 -3.6039 -0.8910 33 1 0.5431 -4.9308 -0.0028 34 1 2.0881 -9.1256 0.6888 35 1 3.3014 -8.3527 -0.3622 36 1 2.1268 -10.3026 -1.4567 37 1 1.9246 -8.7699 -2.3399 38 1 -0.5209 -10.5133 -5.6528 39 1 -1.7457 -12.5527 -5.0240 40 1 -2.0491 -13.1302 -2.6513 41 1 -0.1505 -7.5858 -2.2372 42 1 -1.5040 -8.2309 -1.2771 43 1 -0.3132 -7.7555 0.8076 44 1 -0.3384 -6.2732 -0.1837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591965768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:02 Heat of formation + Delta-G solvation = -71.358222 kcal Electronic energy + Delta-G solvation = -29353.524969 eV Core-core repulsion = 24942.433343 eV Total energy + Delta-G solvation = -4411.091626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.51859 -49.21573 -40.47700 -39.45417 -37.82089 -34.96438 -34.68403 -32.86532 -31.39593 -30.80147 -30.54375 -29.32871 -26.77140 -24.72914 -23.87167 -23.42743 -22.85604 -21.59384 -20.89659 -19.44568 -18.64407 -18.18361 -17.58688 -16.89102 -16.54210 -16.35145 -16.00614 -15.80555 -15.71916 -15.50647 -15.21968 -15.18529 -14.85281 -14.49568 -14.41269 -14.05173 -13.66228 -13.53048 -13.23750 -12.73846 -12.66108 -12.55624 -12.38629 -12.28055 -12.22730 -11.68581 -11.48909 -11.39457 -11.11940 -11.03922 -10.60368 -10.31958 -9.88946 -9.53802 -9.32160 -9.23786 -9.23120 -9.11602 -8.68243 -8.44884 -8.17475 -6.08321 -4.10703 0.40558 0.49297 2.79309 2.83094 3.21799 3.29347 3.36905 3.40183 3.42527 3.56248 3.96030 4.19371 4.22191 4.29523 4.44277 4.58843 4.62301 4.75436 4.90462 4.99725 5.03632 5.10855 5.27223 5.28916 5.36283 5.39531 5.43626 5.51934 5.61574 5.64897 5.68277 5.88688 6.09731 6.24373 6.41453 6.41998 6.56063 6.74044 6.78758 7.00976 7.18662 7.56954 7.64282 7.91026 8.25544 8.37611 8.93249 8.98761 9.54044 11.03446 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.002233 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.256805 B =12537.983630 C =12977.568129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.739 5.739 12 C 0.704 3.296 13 O -0.595 6.595 14 N -0.638 5.638 15 C 0.140 3.860 16 C 0.037 3.963 17 N -0.492 5.492 18 C 0.019 3.981 19 C 0.100 3.900 20 F -0.125 7.125 21 C -0.160 4.160 22 C -0.063 4.063 23 C -0.163 4.163 24 C 0.155 3.845 25 F -0.117 7.117 26 C 0.039 3.961 27 C 0.120 3.880 28 H 0.261 0.739 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.392 0.608 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -28.490 -8.046 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.394 5.394 12 C 0.406 3.594 13 O -0.474 6.474 14 N -0.377 5.377 15 C 0.016 3.984 16 C -0.090 4.090 17 N -0.213 5.213 18 C -0.078 4.078 19 C 0.079 3.921 20 F -0.104 7.104 21 C -0.179 4.179 22 C -0.081 4.081 23 C -0.183 4.183 24 C 0.135 3.865 25 F -0.096 7.096 26 C -0.088 4.088 27 C -0.004 4.004 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.227 0.773 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.736 -28.456 -7.459 29.971 hybrid contribution 0.021 1.424 -0.674 1.575 sum -5.715 -27.032 -8.132 28.802 Atomic orbital electron populations 1.69964 1.06085 1.26736 1.50599 1.25000 0.94896 0.99416 0.95037 0.86456 0.80195 0.83333 0.77587 1.19564 1.20960 1.20942 1.21088 0.93316 0.90321 1.51041 0.92151 1.19328 0.94258 0.91120 0.97754 1.21604 0.95667 0.80413 1.00665 1.45697 1.09867 1.05334 1.78503 1.15940 0.85301 0.80316 0.77874 1.90874 1.12014 1.86146 1.58318 1.47300 1.05834 1.05608 1.78936 1.21418 0.97502 0.82570 0.96884 1.22744 0.85581 1.01311 0.99388 1.59528 1.05453 1.12539 1.43801 1.18844 1.03549 0.96695 0.88677 1.18290 0.95942 0.84870 0.93022 1.91538 1.77588 1.48667 1.92562 1.21226 1.01112 0.95726 0.99860 1.20896 0.96026 0.95569 0.95660 1.21227 1.03401 1.01301 0.92321 1.17252 0.97387 0.92922 0.78968 1.91553 1.93055 1.91950 1.32999 1.22663 0.99389 0.87605 0.99139 1.21660 0.80496 1.00281 0.98003 0.92927 0.96043 0.95967 0.92649 0.92881 0.77276 0.91055 0.88185 0.89428 0.92633 0.83974 0.83774 0.83650 0.92680 0.89263 0.90364 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 11 N -0.74 -13.73 5.47 -65.23 -0.36 -14.09 16 12 C 0.70 13.07 8.31 -86.92 -0.72 12.35 16 13 O -0.59 -13.20 15.83 5.29 0.08 -13.12 16 14 N -0.64 -9.15 3.01 -178.19 -0.54 -9.69 16 15 C 0.14 1.74 6.58 -3.60 -0.02 1.72 16 16 C 0.04 0.40 5.19 -3.70 -0.02 0.38 16 17 N -0.49 -5.21 4.42 -170.65 -0.75 -5.97 16 18 C 0.02 0.18 4.68 -83.56 -0.39 -0.21 16 19 C 0.10 0.92 6.74 -39.27 -0.26 0.65 16 20 F -0.13 -1.40 13.56 2.25 0.03 -1.37 16 21 C -0.16 -1.03 10.02 -39.53 -0.40 -1.43 16 22 C -0.06 -0.30 10.04 -39.55 -0.40 -0.70 16 23 C -0.16 -0.94 10.02 -39.53 -0.40 -1.33 16 24 C 0.16 1.32 7.31 -39.27 -0.29 1.03 16 25 F -0.12 -1.16 17.08 2.25 0.04 -1.13 16 26 C 0.04 0.41 5.24 -3.70 -0.02 0.39 16 27 C 0.12 1.36 6.59 -3.60 -0.02 1.34 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.39 6.36 5.97 -40.82 -0.24 6.11 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.36 7.11 -51.93 -0.37 1.00 16 36 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.06 0.68 6.31 -51.93 -0.33 0.35 16 38 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.14 0.26 8.06 -52.48 -0.42 -0.17 16 40 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 41 H 0.05 0.66 6.58 -51.93 -0.34 0.31 16 42 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.97 5.63 -51.93 -0.29 0.68 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -33.58 366.37 -9.54 -43.12 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.76 Total: 1.63 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -3.52 Total: 4.11 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.91 Total: -55.30 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.07 Total: -2.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.58 -9.54 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591965768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.243 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds