Wall clock time and date at job start Tue Mar 31 2020 23:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99508 * 2 1 4 4 H 1.48498 * 109.46593 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47414 * 300.00298 * 3 2 1 6 6 H 1.48502 * 109.46853 * 60.00249 * 3 2 1 7 7 C 1.37874 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47316 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47156 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99967 * 179.97438 * 11 10 9 13 13 O 1.21583 * 119.99944 * 5.08264 * 12 11 10 14 14 N 1.34769 * 120.00070 * 185.08291 * 12 11 10 15 15 C 1.47076 * 120.88332 * 175.00203 * 14 12 11 16 16 C 1.53239 * 108.52792 * 231.16533 * 15 14 12 17 17 N 1.46905 * 109.33811 * 306.17123 * 16 15 14 18 18 C 1.40016 * 110.99925 * 187.25198 * 17 16 15 19 19 C 1.38995 * 120.08678 * 299.71922 * 18 17 16 20 20 F 1.35106 * 120.03923 * 0.02671 * 19 18 17 21 21 C 1.38324 * 119.91820 * 179.77031 * 19 18 17 22 22 C 1.38282 * 120.08009 * 0.51233 * 21 19 18 23 23 C 1.38268 * 120.17430 * 359.74500 * 22 21 19 24 24 C 1.38335 * 120.08530 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.04225 * 180.02562 * 24 23 22 26 26 C 1.46905 * 111.26759 * 63.10232 * 17 16 15 27 27 C 1.47079 * 120.88168 * 354.98498 * 14 12 11 28 28 H 0.96996 * 120.00530 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47174 * 59.99588 * 9 7 2 30 30 H 1.09010 * 109.46744 * 299.99734 * 9 7 2 31 31 H 1.09000 * 109.46973 * 59.99339 * 10 9 7 32 32 H 1.09002 * 109.47066 * 299.99851 * 10 9 7 33 33 H 0.97003 * 120.00143 * 0.02562 * 11 10 9 34 34 H 1.08999 * 109.62879 * 111.45226 * 15 14 12 35 35 H 1.08999 * 109.78773 * 350.97094 * 15 14 12 36 36 H 1.09001 * 109.49679 * 186.21089 * 16 15 14 37 37 H 1.08999 * 109.49159 * 66.12315 * 16 15 14 38 38 H 1.07998 * 119.96260 * 180.27380 * 21 19 18 39 39 H 1.08004 * 119.90933 * 179.76486 * 22 21 19 40 40 H 1.07998 * 119.96005 * 180.02562 * 23 22 21 41 41 H 1.08992 * 109.49297 * 56.85556 * 26 17 16 42 42 H 1.09003 * 109.49046 * 176.93641 * 26 17 16 43 43 H 1.09001 * 109.62693 * 248.54256 * 27 14 12 44 44 H 1.09001 * 109.63198 * 9.12203 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5131 -4.9307 -0.0020 12 6 2.1870 -6.0979 -0.0024 13 8 3.3993 -6.1000 0.0910 14 7 1.5172 -7.2628 -0.1063 15 6 2.2373 -8.5403 -0.2185 16 6 1.6826 -9.3077 -1.4233 17 7 0.2240 -9.4261 -1.2950 18 6 -0.3011 -10.2602 -2.2896 19 6 -0.1363 -9.9345 -3.6307 20 9 0.5316 -8.8122 -3.9770 21 6 -0.6524 -10.7634 -4.6105 22 6 -1.3407 -11.9094 -4.2568 23 6 -1.5113 -12.2341 -2.9236 24 6 -0.9931 -11.4132 -1.9381 25 9 -1.1599 -11.7315 -0.6359 26 6 -0.4219 -8.1069 -1.3192 27 6 0.0467 -7.2903 -0.1101 28 1 -0.4851 0.8400 0.0004 29 1 0.6249 -2.5563 -0.8919 30 1 0.6242 -2.5575 0.8881 31 1 2.8715 -3.6046 0.8890 32 1 2.8728 -3.6039 -0.8910 33 1 0.5431 -4.9308 -0.0028 34 1 2.0881 -9.1256 0.6888 35 1 3.3014 -8.3527 -0.3622 36 1 2.1268 -10.3026 -1.4567 37 1 1.9246 -8.7699 -2.3399 38 1 -0.5209 -10.5133 -5.6528 39 1 -1.7457 -12.5527 -5.0240 40 1 -2.0491 -13.1302 -2.6513 41 1 -0.1505 -7.5858 -2.2372 42 1 -1.5040 -8.2309 -1.2771 43 1 -0.3132 -7.7555 0.8076 44 1 -0.3384 -6.2732 -0.1837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591965768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:02 Heat of formation + Delta-G solvation = -92.714937 kcal Electronic energy + Delta-G solvation = -29354.451065 eV Core-core repulsion = 24942.433343 eV Total energy + Delta-G solvation = -4412.017723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.24174 -49.86940 -41.62199 -40.36776 -38.73121 -36.69004 -35.82303 -34.83422 -32.51096 -31.62267 -31.31840 -30.81935 -27.84866 -26.52138 -24.91489 -24.07952 -23.57202 -23.04049 -22.37984 -20.71996 -19.57782 -19.09151 -18.53017 -18.23667 -17.70008 -17.38975 -16.93541 -16.87840 -16.63405 -16.54800 -16.49986 -16.02584 -15.90438 -15.61247 -15.42385 -15.38665 -15.16518 -14.87093 -14.29904 -14.08477 -13.82245 -13.62921 -13.19951 -13.13633 -12.98499 -12.97164 -12.89161 -12.54994 -12.51704 -12.39442 -12.29309 -12.26697 -11.68835 -11.47605 -11.19315 -10.62069 -10.28756 -9.93855 -9.88247 -9.78459 -9.48784 -8.24991 -6.35235 -0.14237 -0.04315 1.40601 1.41065 1.52040 1.56756 2.04511 2.32667 2.39305 2.45493 2.80035 2.89907 3.09775 3.41657 3.61796 3.76427 3.80227 3.85561 4.00081 4.08147 4.18376 4.23166 4.28400 4.42483 4.45010 4.49155 4.56879 4.68113 4.72124 4.79012 4.83669 4.89899 5.01339 5.03701 5.19380 5.26348 5.35061 5.48716 5.55591 5.56885 5.58805 5.76397 5.85363 6.05848 6.15750 6.77622 6.90342 7.34009 7.47876 8.87257 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.002233 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.256805 B =12537.983630 C =12977.568129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.702 3.298 13 O -0.635 6.635 14 N -0.630 5.630 15 C 0.139 3.861 16 C 0.047 3.953 17 N -0.493 5.493 18 C -0.001 4.001 19 C 0.076 3.924 20 F -0.145 7.145 21 C -0.156 4.156 22 C -0.048 4.048 23 C -0.151 4.151 24 C 0.139 3.861 25 F -0.130 7.130 26 C 0.045 3.955 27 C 0.117 3.883 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.009 0.991 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.404 0.596 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.159 0.841 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.038 0.962 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 -30.218 -8.953 32.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.036 3.964 11 N -0.391 5.391 12 C 0.403 3.597 13 O -0.517 6.517 14 N -0.368 5.368 15 C 0.016 3.984 16 C -0.080 4.080 17 N -0.214 5.214 18 C -0.097 4.097 19 C 0.054 3.946 20 F -0.124 7.124 21 C -0.175 4.175 22 C -0.065 4.065 23 C -0.170 4.170 24 C 0.118 3.882 25 F -0.108 7.108 26 C -0.082 4.082 27 C -0.006 4.006 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.241 0.759 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.056 0.944 38 H 0.176 0.824 39 H 0.201 0.799 40 H 0.190 0.810 41 H 0.056 0.944 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.917 -30.237 -8.373 32.128 hybrid contribution 0.286 1.816 -0.449 1.892 sum -6.630 -28.421 -8.821 30.488 Atomic orbital electron populations 1.70062 1.07512 1.27963 1.51056 1.25874 0.95822 1.03092 0.94395 0.85382 0.78937 0.78704 0.77932 1.19025 1.20151 1.20151 1.21473 0.93592 0.91829 1.51461 0.92318 1.19122 0.94181 0.91627 0.96313 1.21102 0.94685 0.81027 0.99603 1.45405 1.10340 1.04504 1.78807 1.16034 0.84865 0.81090 0.77663 1.90840 1.13842 1.86871 1.60123 1.47345 1.07216 1.04841 1.77392 1.21543 0.96672 0.81846 0.98366 1.22605 0.86347 1.01511 0.97556 1.59509 1.04917 1.12353 1.44645 1.18919 1.04904 0.97263 0.88626 1.18553 0.97242 0.85162 0.93623 1.91488 1.78288 1.49893 1.92693 1.21537 1.00257 0.95610 1.00139 1.21356 0.94211 0.94832 0.96139 1.21592 1.02067 1.01284 0.92052 1.17511 0.98295 0.93306 0.79056 1.91519 1.93272 1.92049 1.33993 1.22593 1.00295 0.87621 0.97701 1.21875 0.78428 1.00973 0.99301 0.92509 0.97357 0.97280 0.93741 0.93907 0.75856 0.89563 0.89709 0.87824 0.94370 0.82363 0.79875 0.81004 0.94355 0.87613 0.88717 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.30 5.09 29.85 0.15 1.45 16 10 C 0.16 7.28 5.62 86.38 0.49 7.76 16 11 N -0.73 -27.91 5.47 -478.55 -2.62 -30.53 16 12 C 0.70 26.67 8.31 179.06 1.49 28.16 16 13 O -0.63 -29.06 15.83 -3.98 -0.06 -29.12 16 14 N -0.63 -18.26 3.01 -835.95 -2.52 -20.78 16 15 C 0.14 3.48 6.58 86.35 0.57 4.05 16 16 C 0.05 1.03 5.19 86.38 0.45 1.48 16 17 N -0.49 -10.23 4.42 -693.81 -3.07 -13.29 16 18 C 0.00 -0.02 4.68 38.20 0.18 0.16 16 19 C 0.08 1.33 6.74 22.47 0.15 1.48 16 20 F -0.14 -3.33 13.56 44.97 0.61 -2.72 16 21 C -0.16 -1.65 10.02 22.30 0.22 -1.43 16 22 C -0.05 -0.27 10.04 22.29 0.22 -0.04 16 23 C -0.15 -1.23 10.02 22.30 0.22 -1.01 16 24 C 0.14 2.11 7.31 22.47 0.16 2.28 16 25 F -0.13 -2.41 17.08 44.97 0.77 -1.64 16 26 C 0.05 0.94 5.24 86.38 0.45 1.39 16 27 C 0.12 2.61 6.59 86.35 0.57 3.18 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.40 13.29 5.97 -92.71 -0.55 12.74 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.40 7.11 -2.39 -0.02 2.39 16 36 H 0.10 1.90 8.09 -2.39 -0.02 1.89 16 37 H 0.04 0.97 6.31 -2.39 -0.02 0.96 16 38 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.18 -0.36 8.06 -2.91 -0.02 -0.38 16 40 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.04 0.94 6.58 -2.39 -0.02 0.92 16 42 H 0.11 1.85 8.09 -2.39 -0.02 1.83 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.09 1.98 5.63 -2.39 -0.01 1.97 16 Total: -1.00 -73.71 366.37 1.93 -71.78 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.49 Total: 15.57 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 6.02 Total: 18.97 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -7.92 Total: -119.05 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.06 Total: -29.12 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 1.38 Total: -4.36 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.71 1.93 -71.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591965768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.934 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds