Wall clock time and date at job start Tue Mar 31 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00442 * 2 1 4 4 O 1.20830 * 119.99488 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00553 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.46356 * 300.00231 * 5 3 2 7 7 C 1.52990 * 109.47248 * 59.99836 * 5 3 2 8 8 O 1.42904 * 109.46979 * 55.00441 * 7 5 3 9 9 N 1.46899 * 109.47347 * 180.02562 * 5 3 2 10 10 C 1.46904 * 110.99883 * 154.99675 * 9 5 3 11 11 C 1.52998 * 109.46807 * 179.97438 * 10 9 5 12 12 H 1.09002 * 109.47288 * 304.99826 * 11 10 9 13 13 O 1.42901 * 109.47265 * 65.00318 * 11 10 9 14 14 C 1.53001 * 109.46946 * 185.00169 * 11 10 9 15 15 O 1.42894 * 109.47320 * 174.99955 * 14 11 10 16 16 C 1.35674 * 117.00440 * 180.02562 * 15 14 11 17 17 C 1.39318 * 119.81552 * 359.72338 * 16 15 14 18 18 C 1.36440 * 120.18563 * 179.75877 * 17 16 15 19 19 C 1.40832 * 119.80916 * 0.52064 * 18 17 16 20 20 C 1.41213 * 120.17812 * 179.72013 * 19 18 17 21 21 H 1.08000 * 120.00456 * 24.56095 * 20 19 18 22 22 C 1.39891 * 120.00061 * 204.56142 * 20 19 18 23 23 N 1.30888 * 119.99947 * 17.94050 * 22 20 19 24 24 Si 1.86794 * 120.00484 * 197.94055 * 22 20 19 25 25 H 1.48502 * 109.47017 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47497 * 119.99610 * 24 22 20 27 27 H 1.48498 * 109.47310 * 239.99979 * 24 22 20 28 28 C 1.40839 * 119.64417 * 359.73571 * 19 18 17 29 29 C 1.36436 * 119.80926 * 0.02562 * 28 19 18 30 30 H 1.09007 * 109.46605 * 299.99903 * 1 2 3 31 31 H 1.09002 * 109.47011 * 59.99447 * 1 2 3 32 32 H 1.08995 * 109.47024 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47717 * 175.00398 * 7 5 3 34 34 H 1.09004 * 109.47333 * 295.00560 * 7 5 3 35 35 H 0.96705 * 113.99668 * 180.02562 * 8 7 5 36 36 H 1.00895 * 110.99808 * 31.04809 * 9 5 3 37 37 H 1.08998 * 109.46620 * 59.99892 * 10 9 5 38 38 H 1.08995 * 109.47171 * 300.00097 * 10 9 5 39 39 H 0.96699 * 113.99624 * 59.99789 * 13 11 10 40 40 H 1.08998 * 109.47373 * 295.00116 * 14 11 10 41 41 H 1.09005 * 109.47168 * 55.00229 * 14 11 10 42 42 H 1.08001 * 119.90542 * 0.02612 * 17 16 15 43 43 H 1.07990 * 120.09414 * 180.25114 * 18 17 16 44 44 H 0.96999 * 120.00262 * 179.97438 * 23 22 20 45 45 H 1.07993 * 120.09531 * 179.97438 * 28 19 18 46 46 H 1.08001 * 119.90880 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7804 0.8892 7 6 4.1130 0.5815 -1.2501 8 8 3.5120 1.1536 -2.4136 9 7 3.9830 2.6835 0.0002 10 6 5.3244 2.8355 0.5794 11 6 5.7228 4.3126 0.5623 12 1 5.6417 4.6991 -0.4537 13 8 4.8534 5.0505 1.4235 14 6 7.1661 4.4572 1.0492 15 8 7.5769 5.8200 0.9236 16 6 8.8408 6.1210 1.3146 17 6 9.6679 5.1184 1.8164 18 6 10.9418 5.4117 2.2071 19 6 11.4162 6.7343 2.1123 20 6 12.7314 7.0476 2.5201 21 1 13.4923 6.2811 2.5254 22 6 13.0488 8.3509 2.9172 23 7 12.0958 9.1841 3.2497 24 14 14.8327 8.9020 2.9730 25 1 15.7107 7.7806 2.5524 26 1 15.0247 10.0519 2.0532 27 1 15.1812 9.3118 4.3572 28 6 10.5719 7.7428 1.6090 29 6 9.3023 7.4319 1.2179 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 5.1937 0.7151 -1.2964 34 1 3.8800 -0.4824 -1.2066 35 1 3.8125 0.7611 -3.2448 36 1 3.3118 3.2587 0.4866 37 1 6.0405 2.2596 -0.0067 38 1 5.3198 2.4719 1.6069 39 1 4.8739 4.7600 2.3456 40 1 7.2291 4.1536 2.0942 41 1 7.8179 3.8243 0.4470 42 1 9.3010 4.1055 1.8922 43 1 11.5830 4.6326 2.5921 44 1 12.3159 10.0877 3.5254 45 1 10.9280 8.7595 1.5335 46 1 8.6533 8.2041 0.8321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592429144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:40 Heat of formation + Delta-G solvation = -194.768596 kcal Electronic energy + Delta-G solvation = -28488.864798 eV Core-core repulsion = 24151.216461 eV Total energy + Delta-G solvation = -4337.648337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98193 -39.15668 -38.20055 -37.29021 -36.81162 -36.12260 -35.02526 -33.32000 -31.38432 -29.96364 -29.23048 -28.78720 -27.77069 -25.60860 -24.62369 -23.63365 -21.98834 -20.89381 -20.66735 -20.49634 -18.45502 -17.77236 -17.52787 -17.36119 -16.97518 -16.73543 -16.49369 -16.19021 -15.60278 -15.19857 -14.93101 -14.52493 -14.30400 -14.14667 -14.01727 -13.92111 -13.53154 -13.30164 -13.22866 -12.83451 -12.59635 -12.29245 -12.20061 -12.13758 -11.92567 -11.75437 -11.39891 -11.19254 -11.16603 -10.97553 -10.86863 -10.78632 -10.59821 -10.34887 -10.06200 -9.97480 -9.81384 -9.34112 -9.02469 -8.89946 -7.64702 -7.03510 -6.72553 -4.25813 1.82366 2.17686 2.76717 2.94641 3.08824 3.13781 3.20222 3.41895 3.76229 3.94996 4.04865 4.29380 4.36240 4.51883 4.61526 4.71242 4.80112 4.80840 4.83775 4.92469 4.99120 5.04575 5.12111 5.15380 5.30443 5.35725 5.58691 5.66900 5.94449 6.02376 6.04662 6.22777 6.41790 6.72940 6.95563 6.97417 7.10742 7.18266 7.28789 7.36352 7.45907 7.55264 7.62607 7.78436 8.00534 8.20256 8.45060 8.65244 8.89704 8.98454 10.21869 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.035734 B = 0.001648 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.370818 B =16986.476689 C =17274.946624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.490 6.490 5 C 0.097 3.903 6 H 0.095 0.905 7 C 0.092 3.908 8 O -0.557 6.557 9 N -0.659 5.659 10 C 0.030 3.970 11 C 0.113 3.887 12 H 0.118 0.882 13 O -0.548 6.548 14 C 0.040 3.960 15 O -0.316 6.316 16 C -0.009 4.009 17 C -0.169 4.169 18 C -0.199 4.199 19 C 0.087 3.913 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.798 5.798 24 Si 0.907 3.093 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.275 1.275 28 C -0.133 4.133 29 C -0.119 4.119 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.380 0.620 36 H 0.365 0.635 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.370 0.630 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.280 0.720 45 H 0.126 0.874 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 -19.007 -5.436 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.375 6.375 5 C -0.014 4.014 6 H 0.113 0.887 7 C 0.013 3.987 8 O -0.362 6.362 9 N -0.296 5.296 10 C -0.099 4.099 11 C 0.053 3.947 12 H 0.135 0.865 13 O -0.353 6.353 14 C -0.037 4.037 15 O -0.232 6.232 16 C -0.052 4.052 17 C -0.187 4.187 18 C -0.218 4.218 19 C 0.085 3.915 20 C -0.493 4.493 21 H 0.095 0.905 22 C -0.142 4.142 23 N -0.424 5.424 24 Si 0.731 3.269 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.201 1.201 28 C -0.152 4.152 29 C -0.137 4.137 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.189 0.811 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.216 0.784 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.143 0.857 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.234 -17.664 -6.153 25.434 hybrid contribution 1.027 -0.745 1.312 1.825 sum -16.207 -18.409 -4.842 25.000 Atomic orbital electron populations 1.23284 0.75916 1.03727 1.02771 1.86451 1.23738 1.33163 1.84268 1.23367 0.91574 0.81654 0.72354 1.90691 1.66448 1.36206 1.44182 1.21285 0.87808 0.92969 0.99387 0.88716 1.22079 0.96993 0.94990 0.84592 1.86604 1.69183 1.64560 1.15878 1.60326 1.04369 1.04282 1.60646 1.22693 0.91287 0.97983 0.97967 1.21926 0.86997 0.89337 0.96417 0.86457 1.86688 1.64976 1.61505 1.22093 1.23064 0.95175 0.85187 1.00283 1.85894 1.29346 1.25233 1.82699 1.18625 0.83733 0.94419 1.08438 1.20386 0.96073 0.96341 1.05938 1.20543 0.95009 0.97281 1.09010 1.17608 0.93343 0.90681 0.89875 1.19487 0.95557 0.94931 1.39366 0.90530 1.25883 0.99321 0.96426 0.92588 1.69844 1.34265 1.06642 1.31687 0.86291 0.82702 0.79392 0.78492 1.18491 1.19731 1.20090 1.20986 0.92768 1.00484 1.00995 1.19853 0.96761 0.92573 1.04561 0.91853 0.91660 0.87989 0.91954 0.92265 0.77321 0.81145 0.89426 0.94235 0.78395 0.93017 0.92300 0.88984 0.88792 0.90951 0.85655 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.15 10.49 -39.25 -0.41 -3.56 16 3 C 0.47 4.94 6.80 36.01 0.24 5.18 16 4 O -0.49 -6.71 15.40 -18.75 -0.29 -7.00 16 5 C 0.10 0.82 2.92 -68.87 -0.20 0.62 16 6 H 0.10 0.56 7.80 -51.93 -0.40 0.16 16 7 C 0.09 0.64 6.74 37.15 0.25 0.89 16 8 O -0.56 -4.98 13.09 -35.23 -0.46 -5.44 16 9 N -0.66 -6.87 6.14 -107.96 -0.66 -7.53 16 10 C 0.03 0.27 5.16 -3.82 -0.02 0.25 16 11 C 0.11 1.41 3.49 -26.73 -0.09 1.32 16 12 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 13 O -0.55 -7.45 12.82 -40.08 -0.51 -7.96 16 14 C 0.04 0.60 4.36 37.16 0.16 0.76 16 15 O -0.32 -6.48 10.09 -23.57 -0.24 -6.72 16 16 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 17 C -0.17 -3.76 8.96 -39.83 -0.36 -4.12 16 18 C -0.20 -4.85 9.74 -39.25 -0.38 -5.23 16 19 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 20 C -0.46 -12.29 9.04 -37.83 -0.34 -12.63 16 21 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 22 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 23 N -0.80 -20.75 10.96 55.55 0.61 -20.14 16 24 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 28 C -0.13 -3.50 8.64 -39.25 -0.34 -3.83 16 29 C -0.12 -2.91 9.92 -39.83 -0.40 -3.31 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 7.35 -51.93 -0.38 -0.01 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.38 1.63 9.12 45.56 0.42 2.04 16 36 H 0.36 4.37 7.01 -39.29 -0.28 4.10 16 37 H 0.09 0.69 7.36 -51.93 -0.38 0.31 16 38 H 0.04 0.30 8.05 -51.93 -0.42 -0.12 16 39 H 0.37 3.67 9.04 45.56 0.41 4.09 16 40 H 0.05 0.72 7.64 -51.93 -0.40 0.33 16 41 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 42 H 0.09 1.74 6.27 -52.49 -0.33 1.41 16 43 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 45 H 0.13 3.37 6.16 -52.49 -0.32 3.05 16 46 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -34.21 390.13 -7.46 -41.67 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -4.99 Total: 12.90 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.35 Total: -15.74 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -1.91 Total: -30.68 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.21 -7.46 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592429144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.096 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds