Wall clock time and date at job start Tue Mar 31 2020 22:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00442 * 2 1 4 4 O 1.20830 * 119.99488 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00553 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.46356 * 300.00231 * 5 3 2 7 7 C 1.52990 * 109.47248 * 59.99836 * 5 3 2 8 8 O 1.42904 * 109.46979 * 55.00441 * 7 5 3 9 9 N 1.46899 * 109.47347 * 180.02562 * 5 3 2 10 10 C 1.46904 * 110.99883 * 154.99675 * 9 5 3 11 11 C 1.52998 * 109.46807 * 179.97438 * 10 9 5 12 12 H 1.09002 * 109.47288 * 304.99826 * 11 10 9 13 13 O 1.42901 * 109.47265 * 65.00318 * 11 10 9 14 14 C 1.53001 * 109.46946 * 185.00169 * 11 10 9 15 15 O 1.42894 * 109.47320 * 174.99955 * 14 11 10 16 16 C 1.35674 * 117.00440 * 180.02562 * 15 14 11 17 17 C 1.39318 * 119.81552 * 359.72338 * 16 15 14 18 18 C 1.36440 * 120.18563 * 179.75877 * 17 16 15 19 19 C 1.40832 * 119.80916 * 0.52064 * 18 17 16 20 20 C 1.41213 * 120.17812 * 179.72013 * 19 18 17 21 21 H 1.08000 * 120.00456 * 24.56095 * 20 19 18 22 22 C 1.39891 * 120.00061 * 204.56142 * 20 19 18 23 23 N 1.30888 * 119.99947 * 17.94050 * 22 20 19 24 24 Si 1.86794 * 120.00484 * 197.94055 * 22 20 19 25 25 H 1.48502 * 109.47017 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47497 * 119.99610 * 24 22 20 27 27 H 1.48498 * 109.47310 * 239.99979 * 24 22 20 28 28 C 1.40839 * 119.64417 * 359.73571 * 19 18 17 29 29 C 1.36436 * 119.80926 * 0.02562 * 28 19 18 30 30 H 1.09007 * 109.46605 * 299.99903 * 1 2 3 31 31 H 1.09002 * 109.47011 * 59.99447 * 1 2 3 32 32 H 1.08995 * 109.47024 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47717 * 175.00398 * 7 5 3 34 34 H 1.09004 * 109.47333 * 295.00560 * 7 5 3 35 35 H 0.96705 * 113.99668 * 180.02562 * 8 7 5 36 36 H 1.00895 * 110.99808 * 31.04809 * 9 5 3 37 37 H 1.08998 * 109.46620 * 59.99892 * 10 9 5 38 38 H 1.08995 * 109.47171 * 300.00097 * 10 9 5 39 39 H 0.96699 * 113.99624 * 59.99789 * 13 11 10 40 40 H 1.08998 * 109.47373 * 295.00116 * 14 11 10 41 41 H 1.09005 * 109.47168 * 55.00229 * 14 11 10 42 42 H 1.08001 * 119.90542 * 0.02612 * 17 16 15 43 43 H 1.07990 * 120.09414 * 180.25114 * 18 17 16 44 44 H 0.96999 * 120.00262 * 179.97438 * 23 22 20 45 45 H 1.07993 * 120.09531 * 179.97438 * 28 19 18 46 46 H 1.08001 * 119.90880 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7804 0.8892 7 6 4.1130 0.5815 -1.2501 8 8 3.5120 1.1536 -2.4136 9 7 3.9830 2.6835 0.0002 10 6 5.3244 2.8355 0.5794 11 6 5.7228 4.3126 0.5623 12 1 5.6417 4.6991 -0.4537 13 8 4.8534 5.0505 1.4235 14 6 7.1661 4.4572 1.0492 15 8 7.5769 5.8200 0.9236 16 6 8.8408 6.1210 1.3146 17 6 9.6679 5.1184 1.8164 18 6 10.9418 5.4117 2.2071 19 6 11.4162 6.7343 2.1123 20 6 12.7314 7.0476 2.5201 21 1 13.4923 6.2811 2.5254 22 6 13.0488 8.3509 2.9172 23 7 12.0958 9.1841 3.2497 24 14 14.8327 8.9020 2.9730 25 1 15.7107 7.7806 2.5524 26 1 15.0247 10.0519 2.0532 27 1 15.1812 9.3118 4.3572 28 6 10.5719 7.7428 1.6090 29 6 9.3023 7.4319 1.2179 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 5.1937 0.7151 -1.2964 34 1 3.8800 -0.4824 -1.2066 35 1 3.8125 0.7611 -3.2448 36 1 3.3118 3.2587 0.4866 37 1 6.0405 2.2596 -0.0067 38 1 5.3198 2.4719 1.6069 39 1 4.8739 4.7600 2.3456 40 1 7.2291 4.1536 2.0942 41 1 7.8179 3.8243 0.4470 42 1 9.3010 4.1055 1.8922 43 1 11.5830 4.6326 2.5921 44 1 12.3159 10.0877 3.5254 45 1 10.9280 8.7595 1.5335 46 1 8.6533 8.2041 0.8321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592429144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:39 Heat of formation + Delta-G solvation = -222.930041 kcal Electronic energy + Delta-G solvation = -28490.085969 eV Core-core repulsion = 24151.216461 eV Total energy + Delta-G solvation = -4338.869509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.71629 -40.64818 -39.25899 -38.29144 -37.58120 -37.54054 -35.80962 -35.17142 -32.36084 -31.59759 -30.93477 -29.94920 -28.35705 -26.91209 -26.00489 -24.49793 -23.16448 -22.44337 -22.23701 -21.39438 -19.24835 -19.21782 -18.59725 -18.32162 -18.22097 -17.59676 -17.39668 -17.31494 -17.00888 -16.28484 -15.97329 -15.74652 -15.62969 -15.15497 -15.07041 -14.89362 -14.70815 -14.32168 -14.07496 -14.05538 -13.98596 -13.87868 -13.50997 -13.14716 -13.07451 -12.86112 -12.79898 -12.62272 -12.50708 -12.36689 -11.89969 -11.85702 -11.69924 -11.60472 -11.56337 -11.23069 -11.00998 -10.86861 -10.85925 -9.56878 -9.55031 -8.91425 -8.58854 -6.21858 0.95478 1.03806 1.07771 1.40471 1.51578 1.54739 1.55760 2.23322 2.40022 2.73462 3.06920 3.30233 3.46141 3.66868 3.71313 3.85455 3.98713 4.02149 4.08576 4.27237 4.29539 4.30296 4.30976 4.37036 4.38214 4.47880 4.51635 4.61439 4.67120 4.72219 4.87568 5.03398 5.08961 5.22953 5.27158 5.29452 5.60071 5.65171 5.77097 5.89392 6.07029 6.13524 6.27317 6.57807 6.63288 6.78089 6.84024 6.95323 6.96058 7.11932 8.37810 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.035734 B = 0.001648 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.370818 B =16986.476689 C =17274.946624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.532 6.532 5 C 0.093 3.907 6 H 0.127 0.873 7 C 0.091 3.909 8 O -0.588 6.588 9 N -0.677 5.677 10 C 0.041 3.959 11 C 0.120 3.880 12 H 0.095 0.905 13 O -0.571 6.571 14 C 0.032 3.968 15 O -0.334 6.334 16 C 0.001 3.999 17 C -0.164 4.164 18 C -0.206 4.206 19 C 0.053 3.947 20 C -0.498 4.498 21 H 0.077 0.923 22 C 0.032 3.968 23 N -0.833 5.833 24 Si 0.982 3.018 25 H -0.257 1.257 26 H -0.267 1.267 27 H -0.267 1.267 28 C -0.153 4.153 29 C -0.137 4.137 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.353 0.647 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.385 0.615 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.287 0.713 45 H 0.108 0.892 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.326 -21.725 -5.210 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.421 6.421 5 C -0.018 4.018 6 H 0.144 0.856 7 C 0.012 3.988 8 O -0.396 6.396 9 N -0.313 5.313 10 C -0.088 4.088 11 C 0.061 3.939 12 H 0.113 0.887 13 O -0.377 6.377 14 C -0.045 4.045 15 O -0.249 6.249 16 C -0.043 4.043 17 C -0.182 4.182 18 C -0.225 4.225 19 C 0.050 3.950 20 C -0.528 4.528 21 H 0.095 0.905 22 C -0.181 4.181 23 N -0.460 5.460 24 Si 0.803 3.197 25 H -0.180 1.180 26 H -0.191 1.191 27 H -0.192 1.192 28 C -0.172 4.172 29 C -0.156 4.156 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.246 0.754 36 H 0.175 0.825 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.152 0.848 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.126 0.874 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.982 -20.439 -5.938 27.229 hybrid contribution 0.716 -0.028 1.200 1.398 sum -16.266 -20.467 -4.737 26.569 Atomic orbital electron populations 1.23539 0.74747 1.05799 1.02271 1.86449 1.24943 1.32253 1.83715 1.23887 0.92520 0.81437 0.71070 1.90672 1.67510 1.37563 1.46325 1.21546 0.86448 0.92214 1.01568 0.85588 1.22242 0.97538 0.95751 0.83238 1.86560 1.70042 1.65647 1.17401 1.60310 1.04521 1.05480 1.61032 1.22593 0.91051 0.95325 0.99813 1.21830 0.85534 0.91558 0.94997 0.88713 1.86652 1.65204 1.62452 1.23442 1.23469 0.96669 0.82500 1.01816 1.85887 1.27724 1.28990 1.82345 1.18690 0.84850 0.93930 1.06794 1.20719 0.94992 0.98126 1.04367 1.20814 0.96175 0.96733 1.08792 1.17975 0.94026 0.91975 0.90976 1.19740 0.95876 0.96113 1.41083 0.90454 1.26751 1.03824 0.95984 0.91571 1.69904 1.36527 1.07231 1.32332 0.85162 0.76880 0.78891 0.78777 1.18008 1.19148 1.19200 1.20885 0.93794 0.99919 1.02639 1.20011 0.96476 0.94051 1.05037 0.92017 0.92591 0.84622 0.90470 0.90078 0.75386 0.82529 0.87584 0.91766 0.76653 0.91346 0.90549 0.84845 0.87385 0.90278 0.87433 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -5.66 10.49 -51.39 -0.54 -6.20 16 3 C 0.47 9.31 6.80 71.24 0.48 9.80 16 4 O -0.53 -14.67 15.40 21.95 0.34 -14.33 16 5 C 0.09 1.34 2.92 44.17 0.13 1.47 16 6 H 0.13 1.00 7.80 -2.38 -0.02 0.98 16 7 C 0.09 1.00 6.74 71.98 0.49 1.49 16 8 O -0.59 -9.59 13.09 -148.98 -1.95 -11.54 16 9 N -0.68 -12.90 6.14 -495.46 -3.04 -15.94 16 10 C 0.04 0.62 5.16 86.30 0.44 1.06 16 11 C 0.12 2.79 3.49 30.59 0.11 2.89 16 12 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 13 O -0.57 -14.84 12.82 -144.34 -1.85 -16.69 16 14 C 0.03 0.85 4.36 71.98 0.31 1.16 16 15 O -0.33 -13.21 10.09 -85.27 -0.86 -14.07 16 16 C 0.00 0.06 6.71 22.79 0.15 0.21 16 17 C -0.16 -6.95 8.96 22.11 0.20 -6.76 16 18 C -0.21 -9.88 9.74 22.48 0.22 -9.66 16 19 C 0.05 2.87 5.57 -21.28 -0.12 2.75 16 20 C -0.50 -26.97 9.04 23.40 0.21 -26.76 16 21 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 22 C 0.03 1.65 5.13 85.23 0.44 2.09 16 23 N -0.83 -44.46 10.96 21.82 0.24 -44.22 16 24 Si 0.98 38.53 29.60 68.60 2.03 40.56 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 27 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 28 C -0.15 -8.32 8.64 22.49 0.19 -8.12 16 29 C -0.14 -6.85 9.92 22.11 0.22 -6.63 16 30 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 31 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 32 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.62 7.35 -2.39 -0.02 0.60 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.40 2.79 9.12 -74.05 -0.68 2.11 16 36 H 0.35 8.22 7.01 -89.70 -0.63 7.59 16 37 H 0.11 1.23 7.36 -2.39 -0.02 1.21 16 38 H 0.06 0.68 8.05 -2.39 -0.02 0.66 16 39 H 0.38 6.99 9.04 -74.06 -0.67 6.32 16 40 H 0.07 1.64 7.64 -2.39 -0.02 1.62 16 41 H 0.08 1.81 7.66 -2.38 -0.02 1.80 16 42 H 0.13 4.48 6.27 -2.91 -0.02 4.46 16 43 H 0.11 4.77 8.06 -2.92 -0.02 4.75 16 44 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 45 H 0.11 6.11 6.16 -2.91 -0.02 6.09 16 46 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -76.65 390.13 -1.89 -78.54 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.93 Total: 37.38 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 4.68 Total: -33.48 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -2.80 Total: -60.16 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -4.86 Total: -62.83 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -76.65 -1.89 -78.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592429144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.391 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds