Wall clock time and date at job start Tue Mar 31 2020 22:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00154 * 2 1 4 4 C 1.52988 * 109.47503 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47252 * 64.99761 * 4 3 2 6 6 C 1.37090 * 120.00040 * 270.00551 * 5 4 3 7 7 H 1.08005 * 120.00678 * 131.11083 * 6 5 4 8 8 C 1.38961 * 120.00079 * 311.10838 * 6 5 4 9 9 N 1.31410 * 120.00213 * 175.15444 * 8 6 5 10 10 Si 1.86800 * 119.99485 * 355.15227 * 8 6 5 11 11 H 1.48499 * 109.46929 * 92.45897 * 10 8 6 12 12 H 1.48498 * 109.46818 * 212.45260 * 10 8 6 13 13 H 1.48491 * 109.47303 * 332.45409 * 10 8 6 14 14 C 1.34778 * 119.99902 * 90.00131 * 5 4 3 15 15 O 1.21291 * 119.99826 * 355.66663 * 14 5 4 16 16 C 1.50698 * 120.00182 * 175.67251 * 14 5 4 17 17 H 1.09003 * 109.46965 * 45.53095 * 16 14 5 18 18 C 1.52991 * 109.47572 * 165.53831 * 16 14 5 19 19 C 1.52993 * 109.47691 * 184.12544 * 18 16 14 20 20 H 1.09006 * 110.27196 * 52.17419 * 19 18 16 21 21 C 1.54940 * 110.31517 * 174.36883 * 19 18 16 22 22 C 1.55311 * 100.94250 * 155.36033 * 21 19 18 23 23 C 1.54381 * 102.25245 * 325.86817 * 22 21 19 24 24 O 1.43239 * 107.58971 * 21.35992 * 23 22 21 25 25 C 1.53006 * 109.46884 * 285.53891 * 16 14 5 26 26 F 1.39905 * 109.47074 * 51.01726 * 25 16 14 27 27 F 1.39897 * 109.47393 * 171.01668 * 25 16 14 28 28 F 1.39898 * 109.46956 * 291.01828 * 25 16 14 29 29 H 1.09004 * 109.47047 * 300.00074 * 1 2 3 30 30 H 1.08992 * 109.47085 * 60.00276 * 1 2 3 31 31 H 1.08999 * 109.46677 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47075 * 59.99510 * 3 2 1 33 33 H 1.08998 * 109.46686 * 300.00094 * 3 2 1 34 34 H 1.09000 * 109.47852 * 184.99895 * 4 3 2 35 35 H 1.09002 * 109.47448 * 305.00018 * 4 3 2 36 36 H 0.96993 * 119.99958 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.47341 * 304.12870 * 18 16 14 38 38 H 1.09008 * 109.47062 * 64.12418 * 18 16 14 39 39 H 1.08995 * 111.13080 * 273.28323 * 21 19 18 40 40 H 1.09004 * 111.12660 * 37.44631 * 21 19 18 41 41 H 1.08999 * 110.84480 * 207.67675 * 22 21 19 42 42 H 1.09002 * 110.84647 * 84.05901 * 22 21 19 43 43 H 1.09001 * 109.83241 * 261.84177 * 23 22 21 44 44 H 1.09004 * 109.82341 * 140.86797 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7990 -1.3345 7 1 3.6582 -1.3304 -2.1656 8 6 4.7868 -1.4970 -0.3500 9 7 4.8222 -2.8103 -0.3784 10 14 5.6624 -0.5683 1.0139 11 1 4.7514 -0.4224 2.1774 12 1 6.8747 -1.3207 1.4257 13 1 6.0574 0.7762 0.5227 14 6 4.2634 1.3329 -2.3200 15 8 4.0812 2.5310 -2.2716 16 6 4.8101 0.7040 -3.5756 17 1 4.2330 -0.1890 -3.8157 18 6 4.7103 1.7018 -4.7311 19 6 5.1693 1.0297 -6.0266 20 1 4.6352 0.0911 -6.1749 21 6 4.9434 1.9758 -7.2327 22 6 6.0010 1.4352 -8.2334 23 6 7.1467 0.9985 -7.2953 24 8 6.5864 0.7969 -5.9926 25 6 6.2753 0.3209 -3.3578 26 9 6.3920 -0.4259 -2.1805 27 9 6.7237 -0.4428 -4.4408 28 9 7.0500 1.4811 -3.2528 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.9785 2.1765 0.0902 35 1 3.8508 0.5686 0.8427 36 1 5.3033 -3.2975 0.3086 37 1 3.6766 2.0307 -4.8389 38 1 5.3457 2.5628 -4.5235 39 1 3.9347 1.8697 -7.6317 40 1 5.1506 3.0116 -6.9637 41 1 6.3326 2.2226 -8.9103 42 1 5.6091 0.5836 -8.7896 43 1 7.9080 1.7775 -7.2540 44 1 7.5863 0.0688 -7.6567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593736929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:22 Heat of formation + Delta-G solvation = -252.461104 kcal Electronic energy + Delta-G solvation = -33378.043448 eV Core-core repulsion = 28496.036636 eV Total energy + Delta-G solvation = -4882.006812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.00759 -46.53154 -46.36568 -39.52480 -38.92986 -37.17443 -34.99251 -33.68317 -32.01578 -31.95562 -29.95801 -28.62810 -25.91631 -25.25050 -24.63694 -23.29807 -22.03700 -21.55457 -20.61936 -19.08040 -17.79252 -17.58752 -17.08830 -16.86656 -16.54766 -15.96204 -15.82639 -15.69644 -15.31317 -14.75354 -14.59307 -14.38963 -13.93318 -13.55376 -13.39729 -13.37416 -13.18194 -12.96648 -12.90930 -12.74282 -12.65783 -12.52622 -12.41761 -12.28552 -11.83131 -11.63677 -11.57126 -11.44021 -11.28016 -11.03502 -10.94268 -10.83664 -10.74578 -10.71827 -10.43091 -10.05668 -9.84868 -9.25414 -9.17618 -9.11835 -8.68316 -7.74871 -6.32941 -4.08179 3.11687 3.17161 3.31945 3.35030 3.90503 4.00984 4.06517 4.22597 4.38470 4.52067 4.69644 4.81694 4.90622 4.98518 5.02912 5.21144 5.26942 5.30108 5.54779 5.58590 5.60853 5.64775 5.69324 5.71772 5.76904 5.78526 5.81673 5.88963 5.89622 5.95118 5.99850 6.03426 6.08921 6.17789 6.23888 6.39512 6.49513 7.24372 7.40678 7.74538 8.08792 8.24482 8.94327 9.28454 9.57130 10.76685 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.005002 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.176870 B = 5596.227978 C = 6522.878706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.056 3.944 4 C 0.101 3.899 5 N -0.445 5.445 6 C -0.329 4.329 7 H 0.101 0.899 8 C 0.087 3.913 9 N -0.863 5.863 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.262 1.262 14 C 0.484 3.516 15 O -0.585 6.585 16 C -0.131 4.131 17 H 0.128 0.872 18 C -0.102 4.102 19 C 0.072 3.928 20 H 0.075 0.925 21 C -0.148 4.148 22 C -0.154 4.154 23 C 0.045 3.955 24 O -0.356 6.356 25 C 0.465 3.535 26 F -0.154 7.154 27 F -0.164 7.164 28 F -0.192 7.192 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.274 0.726 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 6.623 -9.458 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.022 4.022 4 C -0.022 4.022 5 N -0.164 5.164 6 C -0.456 4.456 7 H 0.118 0.882 8 C -0.121 4.121 9 N -0.498 5.498 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.216 1.216 13 H -0.187 1.187 14 C 0.272 3.728 15 O -0.470 6.470 16 C -0.153 4.153 17 H 0.146 0.854 18 C -0.140 4.140 19 C 0.014 3.986 20 H 0.093 0.907 21 C -0.186 4.186 22 C -0.192 4.192 23 C -0.032 4.032 24 O -0.276 6.276 25 C 0.410 3.590 26 F -0.135 7.135 27 F -0.145 7.145 28 F -0.174 7.174 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.638 6.765 -9.123 11.475 hybrid contribution 0.233 0.333 0.667 0.782 sum -1.404 7.098 -8.455 11.128 Atomic orbital electron populations 1.22663 0.82958 1.02118 0.98787 1.88204 1.17735 1.26708 1.95033 1.22849 0.94786 0.85170 0.99386 1.21803 0.92243 0.98871 0.89299 1.43606 1.56553 1.07232 1.09032 1.18833 1.34888 0.78678 1.13233 0.88155 1.25281 0.94359 0.95019 0.97432 1.69613 1.39975 1.06009 1.34227 0.86909 0.79320 0.80938 0.81954 1.20398 1.21556 1.18677 1.19817 0.81401 0.86126 0.85436 1.90557 1.58089 1.14667 1.83700 1.22245 0.93010 1.03028 0.97045 0.85378 1.21624 1.03619 0.97970 0.90747 1.23111 0.83408 0.97424 0.94610 0.90731 1.23261 0.99779 1.00329 0.95241 1.23096 0.96340 1.01332 0.98420 1.23087 0.95919 1.00217 0.83991 1.88880 1.20146 1.90411 1.28113 1.20020 0.88997 0.74988 0.74994 1.93378 1.96518 1.76522 1.47063 1.93201 1.90816 1.75925 1.54536 1.93100 1.78114 1.50184 1.95991 0.95144 0.94882 0.90062 0.93841 0.93202 0.89723 0.90982 0.91607 0.88877 0.89333 0.90048 0.90201 0.90486 0.90746 0.91911 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.38 10.18 -35.23 -0.36 -7.74 16 3 C 0.06 1.07 6.28 37.15 0.23 1.30 16 4 C 0.10 2.21 4.32 -4.04 -0.02 2.19 16 5 N -0.45 -10.57 1.95 -114.81 -0.22 -10.80 16 6 C -0.33 -8.46 6.32 -14.93 -0.09 -8.56 16 7 H 0.10 2.73 7.31 -52.48 -0.38 2.35 16 8 C 0.09 2.33 4.41 -17.46 -0.08 2.26 16 9 N -0.86 -24.21 13.96 55.50 0.77 -23.43 16 10 Si 0.88 21.53 23.70 -169.99 -4.03 17.50 16 11 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.26 -6.44 6.84 56.52 0.39 -6.06 16 14 C 0.48 10.98 6.59 -10.99 -0.07 10.91 16 15 O -0.59 -13.83 15.69 5.55 0.09 -13.74 16 16 C -0.13 -2.60 1.74 -91.77 -0.16 -2.76 16 17 H 0.13 2.48 7.07 -51.93 -0.37 2.12 16 18 C -0.10 -1.66 3.72 -26.74 -0.10 -1.76 16 19 C 0.07 1.01 3.03 -25.71 -0.08 0.93 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 C -0.15 -1.59 6.57 -24.48 -0.16 -1.75 16 22 C -0.15 -1.48 7.02 -24.78 -0.17 -1.66 16 23 C 0.04 0.54 7.79 37.88 0.30 0.84 16 24 O -0.36 -5.66 6.46 -35.23 -0.23 -5.89 16 25 C 0.46 9.94 2.37 37.16 0.09 10.03 16 26 F -0.15 -3.77 12.02 2.25 0.03 -3.74 16 27 F -0.16 -3.32 12.93 2.25 0.03 -3.29 16 28 F -0.19 -4.16 16.05 2.25 0.04 -4.12 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.78 7.49 -51.93 -0.39 1.39 16 35 H 0.07 1.66 3.47 -51.93 -0.18 1.47 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.09 1.56 7.39 -51.92 -0.38 1.18 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -30.74 351.75 -4.15 -34.89 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.36 Total: 1.48 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 0.80 Total: 13.58 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.55 Total: -34.23 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.50 Total: -27.37 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.03 Total: 17.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.74 -4.15 -34.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593736929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.576 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds