Wall clock time and date at job start Tue Mar 31 2020 22:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00154 * 2 1 4 4 C 1.52988 * 109.47503 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47252 * 64.99761 * 4 3 2 6 6 C 1.37090 * 120.00040 * 270.00551 * 5 4 3 7 7 H 1.08005 * 120.00678 * 131.11083 * 6 5 4 8 8 C 1.38961 * 120.00079 * 311.10838 * 6 5 4 9 9 N 1.31410 * 120.00213 * 175.15444 * 8 6 5 10 10 Si 1.86800 * 119.99485 * 355.15227 * 8 6 5 11 11 H 1.48499 * 109.46929 * 92.45897 * 10 8 6 12 12 H 1.48498 * 109.46818 * 212.45260 * 10 8 6 13 13 H 1.48491 * 109.47303 * 332.45409 * 10 8 6 14 14 C 1.34778 * 119.99902 * 90.00131 * 5 4 3 15 15 O 1.21291 * 119.99826 * 355.66663 * 14 5 4 16 16 C 1.50698 * 120.00182 * 175.67251 * 14 5 4 17 17 H 1.09003 * 109.46965 * 45.53095 * 16 14 5 18 18 C 1.52991 * 109.47572 * 165.53831 * 16 14 5 19 19 C 1.52993 * 109.47691 * 184.12544 * 18 16 14 20 20 H 1.09006 * 110.27196 * 52.17419 * 19 18 16 21 21 C 1.54940 * 110.31517 * 174.36883 * 19 18 16 22 22 C 1.55311 * 100.94250 * 155.36033 * 21 19 18 23 23 C 1.54381 * 102.25245 * 325.86817 * 22 21 19 24 24 O 1.43239 * 107.58971 * 21.35992 * 23 22 21 25 25 C 1.53006 * 109.46884 * 285.53891 * 16 14 5 26 26 F 1.39905 * 109.47074 * 51.01726 * 25 16 14 27 27 F 1.39897 * 109.47393 * 171.01668 * 25 16 14 28 28 F 1.39898 * 109.46956 * 291.01828 * 25 16 14 29 29 H 1.09004 * 109.47047 * 300.00074 * 1 2 3 30 30 H 1.08992 * 109.47085 * 60.00276 * 1 2 3 31 31 H 1.08999 * 109.46677 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47075 * 59.99510 * 3 2 1 33 33 H 1.08998 * 109.46686 * 300.00094 * 3 2 1 34 34 H 1.09000 * 109.47852 * 184.99895 * 4 3 2 35 35 H 1.09002 * 109.47448 * 305.00018 * 4 3 2 36 36 H 0.96993 * 119.99958 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.47341 * 304.12870 * 18 16 14 38 38 H 1.09008 * 109.47062 * 64.12418 * 18 16 14 39 39 H 1.08995 * 111.13080 * 273.28323 * 21 19 18 40 40 H 1.09004 * 111.12660 * 37.44631 * 21 19 18 41 41 H 1.08999 * 110.84480 * 207.67675 * 22 21 19 42 42 H 1.09002 * 110.84647 * 84.05901 * 22 21 19 43 43 H 1.09001 * 109.83241 * 261.84177 * 23 22 21 44 44 H 1.09004 * 109.82341 * 140.86797 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7990 -1.3345 7 1 3.6582 -1.3304 -2.1656 8 6 4.7868 -1.4970 -0.3500 9 7 4.8222 -2.8103 -0.3784 10 14 5.6624 -0.5683 1.0139 11 1 4.7514 -0.4224 2.1774 12 1 6.8747 -1.3207 1.4257 13 1 6.0574 0.7762 0.5227 14 6 4.2634 1.3329 -2.3200 15 8 4.0812 2.5310 -2.2716 16 6 4.8101 0.7040 -3.5756 17 1 4.2330 -0.1890 -3.8157 18 6 4.7103 1.7018 -4.7311 19 6 5.1693 1.0297 -6.0266 20 1 4.6352 0.0911 -6.1749 21 6 4.9434 1.9758 -7.2327 22 6 6.0010 1.4352 -8.2334 23 6 7.1467 0.9985 -7.2953 24 8 6.5864 0.7969 -5.9926 25 6 6.2753 0.3209 -3.3578 26 9 6.3920 -0.4259 -2.1805 27 9 6.7237 -0.4428 -4.4408 28 9 7.0500 1.4811 -3.2528 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.9785 2.1765 0.0902 35 1 3.8508 0.5686 0.8427 36 1 5.3033 -3.2975 0.3086 37 1 3.6766 2.0307 -4.8389 38 1 5.3457 2.5628 -4.5235 39 1 3.9347 1.8697 -7.6317 40 1 5.1506 3.0116 -6.9637 41 1 6.3326 2.2226 -8.9103 42 1 5.6091 0.5836 -8.7896 43 1 7.9080 1.7775 -7.2540 44 1 7.5863 0.0688 -7.6567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593736929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:21 Heat of formation + Delta-G solvation = -272.246989 kcal Electronic energy + Delta-G solvation = -33378.901428 eV Core-core repulsion = 28496.036636 eV Total energy + Delta-G solvation = -4882.864792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.75826 -48.27157 -48.15292 -41.08665 -40.20026 -38.67103 -36.80415 -35.17043 -33.95437 -32.95830 -31.43528 -29.97718 -27.26174 -26.80999 -26.34834 -24.88818 -23.47012 -22.47523 -21.86961 -20.93407 -19.56039 -19.30474 -18.80545 -18.34730 -18.09818 -17.56851 -17.24422 -17.09151 -16.71927 -16.29270 -16.06057 -15.82205 -15.54355 -15.22521 -15.04287 -14.95191 -14.63601 -14.53090 -14.45910 -14.32629 -14.26944 -14.12948 -14.00399 -13.74454 -13.49069 -13.24802 -13.07463 -12.71911 -12.60258 -12.42878 -12.31826 -12.29099 -12.01495 -11.92107 -11.75966 -11.65979 -11.59739 -11.06032 -10.69284 -10.44715 -10.32363 -9.66448 -8.38919 -6.13407 1.17719 1.26577 1.35623 1.47438 2.21004 2.25805 2.34345 2.91696 2.95267 3.06290 3.15744 3.31128 3.45435 3.64214 3.75662 4.03348 4.07866 4.13473 4.14325 4.18794 4.23973 4.38455 4.39940 4.42044 4.53225 4.57538 4.59382 4.61114 4.75800 4.77210 4.87127 4.90102 4.93790 5.00296 5.08478 5.18270 5.35161 5.51161 6.09065 6.18886 6.23508 6.39818 6.99566 7.31101 7.64296 8.74035 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.005002 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.176870 B = 5596.227978 C = 6522.878706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.062 3.938 4 C 0.090 3.910 5 N -0.457 5.457 6 C -0.309 4.309 7 H 0.079 0.921 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.915 3.085 11 H -0.261 1.261 12 H -0.293 1.293 13 H -0.267 1.267 14 C 0.483 3.517 15 O -0.593 6.593 16 C -0.127 4.127 17 H 0.130 0.870 18 C -0.093 4.093 19 C 0.068 3.932 20 H 0.077 0.923 21 C -0.141 4.141 22 C -0.144 4.144 23 C 0.034 3.966 24 O -0.390 6.390 25 C 0.463 3.537 26 F -0.176 7.176 27 F -0.156 7.156 28 F -0.195 7.195 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.274 0.726 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 8.052 -10.516 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.015 4.015 4 C -0.032 4.032 5 N -0.177 5.177 6 C -0.436 4.436 7 H 0.097 0.903 8 C -0.151 4.151 9 N -0.539 5.539 10 Si 0.743 3.257 11 H -0.187 1.187 12 H -0.220 1.220 13 H -0.192 1.192 14 C 0.272 3.728 15 O -0.478 6.478 16 C -0.150 4.150 17 H 0.148 0.852 18 C -0.131 4.131 19 C 0.010 3.990 20 H 0.095 0.905 21 C -0.179 4.179 22 C -0.181 4.181 23 C -0.042 4.042 24 O -0.310 6.310 25 C 0.408 3.592 26 F -0.157 7.157 27 F -0.138 7.138 28 F -0.176 7.176 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.645 8.214 -10.183 13.347 hybrid contribution 0.533 -0.060 0.934 1.077 sum -2.112 8.154 -9.249 12.509 Atomic orbital electron populations 1.22867 0.80371 1.03184 1.00493 1.88133 1.20685 1.27562 1.95380 1.22766 0.92665 0.85139 1.00932 1.21943 0.94664 0.98603 0.87975 1.43716 1.57318 1.06622 1.10036 1.18547 1.33568 0.79455 1.12073 0.90337 1.25685 0.95028 0.95338 0.99057 1.69680 1.41742 1.07053 1.35380 0.86344 0.78695 0.79668 0.80984 1.18703 1.22023 1.19183 1.20214 0.80663 0.86087 0.85860 1.90542 1.58240 1.14985 1.84000 1.22305 0.91572 1.03971 0.97103 0.85244 1.21638 1.04357 0.96563 0.90524 1.23175 0.82871 0.98277 0.94638 0.90496 1.23247 1.01399 0.99421 0.93819 1.23076 0.94758 1.02353 0.97911 1.23293 0.96958 1.00712 0.83264 1.88812 1.21095 1.90692 1.30450 1.20193 0.89840 0.74748 0.74419 1.93329 1.96683 1.77145 1.48529 1.93217 1.90812 1.75824 1.53899 1.93088 1.78318 1.50228 1.95988 0.92697 0.93788 0.89448 0.90442 0.93299 0.89121 0.92078 0.91562 0.87390 0.90682 0.87876 0.90144 0.88336 0.89608 0.91597 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -15.88 10.18 -148.98 -1.52 -17.40 16 3 C 0.06 2.28 6.28 71.98 0.45 2.73 16 4 C 0.09 3.88 4.32 86.37 0.37 4.26 16 5 N -0.46 -21.62 1.95 -635.54 -1.24 -22.86 16 6 C -0.31 -16.05 6.32 84.04 0.53 -15.52 16 7 H 0.08 4.39 7.31 -2.91 -0.02 4.36 16 8 C 0.05 2.89 4.41 84.93 0.37 3.26 16 9 N -0.90 -51.51 13.96 21.67 0.30 -51.21 16 10 Si 0.92 44.31 23.70 68.60 1.63 45.94 16 11 H -0.26 -11.82 6.87 99.48 0.68 -11.13 16 12 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 13 H -0.27 -12.98 6.84 99.48 0.68 -12.30 16 14 C 0.48 21.71 6.59 87.66 0.58 22.29 16 15 O -0.59 -27.41 15.69 -3.06 -0.05 -27.45 16 16 C -0.13 -5.02 1.74 -11.54 -0.02 -5.04 16 17 H 0.13 5.05 7.07 -2.39 -0.02 5.03 16 18 C -0.09 -2.94 3.72 30.59 0.11 -2.82 16 19 C 0.07 1.80 3.03 31.26 0.09 1.89 16 20 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 21 C -0.14 -2.62 6.57 32.05 0.21 -2.41 16 22 C -0.14 -2.32 7.02 31.86 0.22 -2.10 16 23 C 0.03 0.77 7.79 72.45 0.56 1.33 16 24 O -0.39 -12.05 6.46 -148.98 -0.96 -13.01 16 25 C 0.46 19.88 2.37 71.98 0.17 20.06 16 26 F -0.18 -8.74 12.02 44.97 0.54 -8.20 16 27 F -0.16 -6.36 12.93 44.97 0.58 -5.78 16 28 F -0.19 -8.43 16.05 44.97 0.72 -7.71 16 29 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 3.71 7.49 -2.39 -0.02 3.70 16 35 H 0.06 2.75 3.47 -2.39 -0.01 2.74 16 36 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.07 2.58 7.39 -2.38 -0.02 2.56 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.22 351.75 5.88 -60.34 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.97 Total: 17.41 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 4.91 Total: 29.94 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -0.94 Total: -74.07 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -2.53 Total: -57.86 kcal Atomic # 9 Polarization: -23.53 SS G_CDS: 1.84 Total: -21.69 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.63 Total: 45.94 kcal Total: -66.22 5.88 -60.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593736929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.910 kcal (2) G-P(sol) polarization free energy of solvation -66.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds