Wall clock time and date at job start Tue Mar 31 2020 22:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00214 * 2 1 4 4 C 1.53004 * 109.46901 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47053 * 65.00405 * 4 3 2 6 6 C 1.37098 * 119.99557 * 264.63188 * 5 4 3 7 7 H 1.08005 * 119.99480 * 145.75459 * 6 5 4 8 8 C 1.38945 * 120.00263 * 325.75633 * 6 5 4 9 9 N 1.31405 * 120.00427 * 339.30846 * 8 6 5 10 10 Si 1.86808 * 119.99811 * 159.30949 * 8 6 5 11 11 H 1.48500 * 109.46825 * 89.99833 * 10 8 6 12 12 H 1.48496 * 109.46873 * 210.00032 * 10 8 6 13 13 H 1.48496 * 109.46884 * 330.00471 * 10 8 6 14 14 C 1.34777 * 119.99967 * 84.63713 * 5 4 3 15 15 O 1.21286 * 120.00135 * 5.41921 * 14 5 4 16 16 C 1.50697 * 119.99624 * 185.41557 * 14 5 4 17 17 H 1.09001 * 109.47389 * 27.55533 * 16 14 5 18 18 C 1.53000 * 109.47260 * 267.55234 * 16 14 5 19 19 C 1.52999 * 109.47204 * 173.69466 * 18 16 14 20 20 H 1.09002 * 109.82411 * 308.36023 * 19 18 16 21 21 C 1.54380 * 109.83179 * 187.47165 * 19 18 16 22 22 C 1.55451 * 102.18700 * 219.18294 * 21 19 18 23 23 C 1.54945 * 100.98841 * 34.04218 * 22 21 19 24 24 O 1.43235 * 109.82937 * 69.24778 * 19 18 16 25 25 C 1.52997 * 109.46953 * 147.55643 * 16 14 5 26 26 F 1.39903 * 109.47452 * 191.90880 * 25 16 14 27 27 F 1.39900 * 109.47481 * 311.91022 * 25 16 14 28 28 F 1.39901 * 109.47286 * 71.91385 * 25 16 14 29 29 H 1.08997 * 109.47387 * 59.99416 * 1 2 3 30 30 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46803 * 299.99617 * 1 2 3 32 32 H 1.09002 * 109.46941 * 60.00534 * 3 2 1 33 33 H 1.08997 * 109.47302 * 300.00333 * 3 2 1 34 34 H 1.09000 * 109.47194 * 304.99963 * 4 3 2 35 35 H 1.09004 * 109.46443 * 185.00047 * 4 3 2 36 36 H 0.96997 * 120.00315 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47152 * 53.69938 * 18 16 14 38 38 H 1.08995 * 109.47516 * 293.70025 * 18 16 14 39 39 H 1.08999 * 110.85272 * 337.32402 * 21 19 18 40 40 H 1.08999 * 110.84667 * 100.94136 * 21 19 18 41 41 H 1.08997 * 111.06129 * 276.12339 * 22 21 19 42 42 H 1.09004 * 111.18122 * 152.00660 * 22 21 19 43 43 H 1.08998 * 110.30647 * 204.68813 * 23 22 21 44 44 H 1.09002 * 110.30836 * 82.52052 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2027 -0.7866 -1.3057 7 1 3.9845 -1.3358 -2.2098 8 6 4.7135 -1.4493 -0.1964 9 7 5.3513 -0.7765 0.7348 10 14 4.4937 -3.2968 -0.0290 11 1 5.6428 -3.9915 -0.6632 12 1 4.4289 -3.6591 1.4097 13 1 3.2347 -3.7083 -0.7004 14 6 4.1574 1.3220 -2.3526 15 8 4.0524 2.5282 -2.2822 16 6 4.4911 0.6702 -3.6697 17 1 4.0828 -0.3403 -3.6889 18 6 6.0106 0.6095 -3.8382 19 6 6.3526 -0.1901 -5.0970 20 1 5.8364 -1.1499 -5.0768 21 6 7.8776 -0.4170 -5.1751 22 6 8.1585 -0.2392 -6.6937 23 6 7.1174 0.8478 -7.0613 24 8 5.9627 0.5469 -6.2617 25 6 3.8836 1.4875 -4.8115 26 9 3.9548 0.7530 -6.0001 27 9 2.5457 1.7739 -4.5197 28 9 4.5950 2.6831 -4.9590 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8514 0.5681 0.8409 35 1 3.9785 2.1764 0.0889 36 1 5.7076 -1.2390 1.5094 37 1 6.4535 0.1246 -2.9683 38 1 6.4065 1.6207 -3.9313 39 1 8.4118 0.3329 -4.5917 40 1 8.1374 -1.4232 -4.8464 41 1 7.9693 -1.1645 -7.2379 42 1 9.1746 0.1152 -6.8674 43 1 6.8691 0.7907 -8.1211 44 1 7.5010 1.8379 -6.8146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593736933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:28 Heat of formation + Delta-G solvation = -271.388481 kcal Electronic energy + Delta-G solvation = -33062.275698 eV Core-core repulsion = 28179.448134 eV Total energy + Delta-G solvation = -4882.827565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.22038 -46.73255 -46.63306 -39.45579 -38.72224 -37.00829 -34.83066 -33.66491 -31.95222 -31.66178 -29.65123 -28.60576 -25.84611 -25.20003 -24.82593 -23.25266 -21.84590 -21.29741 -20.52032 -19.21566 -17.93745 -17.71334 -17.28062 -16.80384 -16.22567 -15.82041 -15.74521 -15.44726 -15.22538 -14.46558 -14.44412 -14.32422 -13.92359 -13.74592 -13.54534 -13.39064 -13.31303 -13.08363 -12.96317 -12.85403 -12.78403 -12.61438 -12.17765 -11.97844 -11.71904 -11.43030 -11.36645 -11.26326 -11.20424 -11.09293 -10.98828 -10.75955 -10.72811 -10.61925 -10.42578 -10.39038 -10.02047 -9.32515 -9.19896 -8.98694 -8.53323 -7.61546 -6.41626 -4.08069 3.09343 3.22036 3.27637 3.44203 3.72024 4.04327 4.09376 4.37767 4.52693 4.59790 4.63848 4.78525 4.92787 5.00374 5.03310 5.23327 5.32634 5.36047 5.58019 5.66389 5.70192 5.73628 5.78296 5.80470 5.83137 5.90324 5.95674 5.98989 6.02079 6.07038 6.14431 6.26718 6.31391 6.40839 6.55559 6.67085 7.23998 7.27351 7.39288 7.73250 7.93604 8.26789 9.01096 9.36470 9.78648 10.60231 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.005228 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.935314 B = 5354.986477 C = 6721.215194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.112 3.888 5 N -0.417 5.417 6 C -0.331 4.331 7 H 0.089 0.911 8 C 0.052 3.948 9 N -0.860 5.860 10 Si 0.914 3.086 11 H -0.279 1.279 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.473 3.527 15 O -0.592 6.592 16 C -0.134 4.134 17 H 0.125 0.875 18 C -0.113 4.113 19 C 0.074 3.926 20 H 0.085 0.915 21 C -0.147 4.147 22 C -0.155 4.155 23 C 0.044 3.956 24 O -0.360 6.360 25 C 0.470 3.530 26 F -0.166 7.166 27 F -0.192 7.192 28 F -0.177 7.177 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.270 0.730 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 -1.168 -7.975 8.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.011 4.011 5 N -0.134 5.134 6 C -0.458 4.458 7 H 0.106 0.894 8 C -0.153 4.153 9 N -0.497 5.497 10 Si 0.740 3.260 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.260 3.740 15 O -0.478 6.478 16 C -0.157 4.157 17 H 0.143 0.857 18 C -0.151 4.151 19 C 0.016 3.984 20 H 0.103 0.897 21 C -0.185 4.185 22 C -0.193 4.193 23 C -0.033 4.033 24 O -0.279 6.279 25 C 0.416 3.584 26 F -0.147 7.147 27 F -0.173 7.173 28 F -0.158 7.158 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.478 -0.712 -7.776 7.947 hybrid contribution -0.298 -0.722 0.125 0.792 sum 1.180 -1.434 -7.650 7.873 Atomic orbital electron populations 1.22648 0.83346 1.01751 0.98911 1.88119 1.17455 1.27687 1.95059 1.23042 0.96421 0.84395 0.98796 1.21567 0.89239 0.99366 0.90967 1.43248 1.55374 1.07284 1.07478 1.19288 1.42844 0.81989 1.01691 0.89370 1.25184 0.93938 0.99939 0.96282 1.69859 1.31603 1.37030 1.11183 0.86154 0.78939 0.83006 0.77875 1.20500 1.20754 1.19190 1.19571 0.82033 0.86621 0.85810 1.90601 1.57242 1.13926 1.86035 1.22362 0.99371 1.01573 0.92357 0.85709 1.21872 0.92048 1.02482 0.98683 1.22878 0.94555 0.95155 0.85808 0.89716 1.23149 0.95693 1.03299 0.96325 1.23267 0.99932 0.99831 0.96229 1.23349 0.86549 0.97386 0.95994 1.88819 1.29307 1.75052 1.34726 1.19993 0.75800 0.79006 0.83617 1.93197 1.95264 1.76808 1.49442 1.93132 1.36589 1.94127 1.93465 1.93115 1.78147 1.48460 1.96087 0.94900 0.90414 0.95146 0.94107 0.94081 0.86087 0.91009 0.91950 0.87596 0.90201 0.90261 0.89905 0.90657 0.90421 0.90322 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.72 10.43 -35.23 -0.37 -8.09 16 3 C 0.05 1.06 6.24 37.16 0.23 1.30 16 4 C 0.11 2.62 5.33 -4.04 -0.02 2.60 16 5 N -0.42 -10.12 2.51 -114.81 -0.29 -10.41 16 6 C -0.33 -7.96 8.55 -14.93 -0.13 -8.08 16 7 H 0.09 2.04 6.20 -52.48 -0.33 1.71 16 8 C 0.05 1.26 4.96 -17.47 -0.09 1.17 16 9 N -0.86 -21.55 11.26 55.50 0.62 -20.93 16 10 Si 0.91 19.06 29.60 -169.99 -5.03 14.03 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 14 C 0.47 11.26 6.15 -10.99 -0.07 11.19 16 15 O -0.59 -15.50 15.28 5.55 0.08 -15.41 16 16 C -0.13 -2.72 1.70 -91.77 -0.16 -2.87 16 17 H 0.13 2.44 6.12 -51.93 -0.32 2.12 16 18 C -0.11 -2.00 4.20 -26.73 -0.11 -2.11 16 19 C 0.07 1.09 3.22 -26.01 -0.08 1.01 16 20 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 21 C -0.15 -1.75 6.56 -24.71 -0.16 -1.91 16 22 C -0.15 -1.59 7.16 -24.40 -0.17 -1.76 16 23 C 0.04 0.54 7.78 38.18 0.30 0.84 16 24 O -0.36 -5.65 6.47 -35.23 -0.23 -5.88 16 25 C 0.47 9.57 2.15 37.16 0.08 9.65 16 26 F -0.17 -3.12 13.23 2.25 0.03 -3.09 16 27 F -0.19 -4.16 16.50 2.25 0.04 -4.12 16 28 F -0.18 -3.75 15.28 2.25 0.03 -3.72 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.12 3.01 5.31 -51.93 -0.28 2.73 16 35 H 0.07 1.69 7.52 -51.93 -0.39 1.30 16 36 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 37 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 38 H 0.08 1.48 7.33 -51.93 -0.38 1.10 16 39 H 0.08 0.94 7.85 -51.93 -0.41 0.54 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -29.17 363.20 -5.21 -34.38 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.30 Total: 5.14 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 0.73 Total: 12.62 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.34 Total: -31.34 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.51 Total: -29.38 kcal Atomic # 9 Polarization: -11.03 SS G_CDS: 0.10 Total: -10.93 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.17 -5.21 -34.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593736933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.009 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds