Wall clock time and date at job start Tue Mar 31 2020 22:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00214 * 2 1 4 4 C 1.53004 * 109.46901 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47053 * 65.00405 * 4 3 2 6 6 C 1.37098 * 119.99557 * 264.63188 * 5 4 3 7 7 H 1.08005 * 119.99480 * 145.75459 * 6 5 4 8 8 C 1.38945 * 120.00263 * 325.75633 * 6 5 4 9 9 N 1.31405 * 120.00427 * 339.30846 * 8 6 5 10 10 Si 1.86808 * 119.99811 * 159.30949 * 8 6 5 11 11 H 1.48500 * 109.46825 * 89.99833 * 10 8 6 12 12 H 1.48496 * 109.46873 * 210.00032 * 10 8 6 13 13 H 1.48496 * 109.46884 * 330.00471 * 10 8 6 14 14 C 1.34777 * 119.99967 * 84.63713 * 5 4 3 15 15 O 1.21286 * 120.00135 * 5.41921 * 14 5 4 16 16 C 1.50697 * 119.99624 * 185.41557 * 14 5 4 17 17 H 1.09001 * 109.47389 * 27.55533 * 16 14 5 18 18 C 1.53000 * 109.47260 * 267.55234 * 16 14 5 19 19 C 1.52999 * 109.47204 * 173.69466 * 18 16 14 20 20 H 1.09002 * 109.82411 * 308.36023 * 19 18 16 21 21 C 1.54380 * 109.83179 * 187.47165 * 19 18 16 22 22 C 1.55451 * 102.18700 * 219.18294 * 21 19 18 23 23 C 1.54945 * 100.98841 * 34.04218 * 22 21 19 24 24 O 1.43235 * 109.82937 * 69.24778 * 19 18 16 25 25 C 1.52997 * 109.46953 * 147.55643 * 16 14 5 26 26 F 1.39903 * 109.47452 * 191.90880 * 25 16 14 27 27 F 1.39900 * 109.47481 * 311.91022 * 25 16 14 28 28 F 1.39901 * 109.47286 * 71.91385 * 25 16 14 29 29 H 1.08997 * 109.47387 * 59.99416 * 1 2 3 30 30 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46803 * 299.99617 * 1 2 3 32 32 H 1.09002 * 109.46941 * 60.00534 * 3 2 1 33 33 H 1.08997 * 109.47302 * 300.00333 * 3 2 1 34 34 H 1.09000 * 109.47194 * 304.99963 * 4 3 2 35 35 H 1.09004 * 109.46443 * 185.00047 * 4 3 2 36 36 H 0.96997 * 120.00315 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47152 * 53.69938 * 18 16 14 38 38 H 1.08995 * 109.47516 * 293.70025 * 18 16 14 39 39 H 1.08999 * 110.85272 * 337.32402 * 21 19 18 40 40 H 1.08999 * 110.84667 * 100.94136 * 21 19 18 41 41 H 1.08997 * 111.06129 * 276.12339 * 22 21 19 42 42 H 1.09004 * 111.18122 * 152.00660 * 22 21 19 43 43 H 1.08998 * 110.30647 * 204.68813 * 23 22 21 44 44 H 1.09002 * 110.30836 * 82.52052 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2027 -0.7866 -1.3057 7 1 3.9845 -1.3358 -2.2098 8 6 4.7135 -1.4493 -0.1964 9 7 5.3513 -0.7765 0.7348 10 14 4.4937 -3.2968 -0.0290 11 1 5.6428 -3.9915 -0.6632 12 1 4.4289 -3.6591 1.4097 13 1 3.2347 -3.7083 -0.7004 14 6 4.1574 1.3220 -2.3526 15 8 4.0524 2.5282 -2.2822 16 6 4.4911 0.6702 -3.6697 17 1 4.0828 -0.3403 -3.6889 18 6 6.0106 0.6095 -3.8382 19 6 6.3526 -0.1901 -5.0970 20 1 5.8364 -1.1499 -5.0768 21 6 7.8776 -0.4170 -5.1751 22 6 8.1585 -0.2392 -6.6937 23 6 7.1174 0.8478 -7.0613 24 8 5.9627 0.5469 -6.2617 25 6 3.8836 1.4875 -4.8115 26 9 3.9548 0.7530 -6.0001 27 9 2.5457 1.7739 -4.5197 28 9 4.5950 2.6831 -4.9590 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8514 0.5681 0.8409 35 1 3.9785 2.1764 0.0889 36 1 5.7076 -1.2390 1.5094 37 1 6.4535 0.1246 -2.9683 38 1 6.4065 1.6207 -3.9313 39 1 8.4118 0.3329 -4.5917 40 1 8.1374 -1.4232 -4.8464 41 1 7.9693 -1.1645 -7.2379 42 1 9.1746 0.1152 -6.8674 43 1 6.8691 0.7907 -8.1211 44 1 7.5010 1.8379 -6.8146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593736933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:28 Heat of formation + Delta-G solvation = -288.059138 kcal Electronic energy + Delta-G solvation = -33062.998592 eV Core-core repulsion = 28179.448134 eV Total energy + Delta-G solvation = -4883.550459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.87532 -48.41552 -48.25758 -40.93172 -40.17179 -38.60527 -36.68658 -35.18875 -33.53247 -32.95118 -31.18820 -30.01846 -27.30569 -26.64267 -26.53750 -24.86864 -23.19605 -22.46730 -21.81777 -21.04315 -19.63229 -19.35406 -18.96307 -18.14204 -17.84035 -17.23801 -17.18285 -16.98237 -16.78930 -16.14893 -16.08640 -15.81515 -15.51802 -15.16783 -15.12824 -14.97465 -14.75307 -14.50420 -14.41573 -14.38981 -14.32368 -14.10929 -13.69032 -13.47173 -13.38211 -13.02712 -12.88976 -12.83252 -12.54387 -12.46337 -12.39120 -12.18498 -12.09776 -11.94630 -11.81507 -11.73725 -11.62249 -11.04505 -10.58663 -10.50067 -10.28164 -9.50668 -8.26355 -5.98329 1.42534 1.53846 1.63297 1.73487 2.00270 2.34498 2.66021 2.88687 2.99380 3.07569 3.12104 3.30738 3.52560 3.66825 3.79015 4.05623 4.09664 4.13794 4.23658 4.25007 4.35273 4.43922 4.46762 4.52765 4.57596 4.60082 4.60923 4.77682 4.82978 4.86436 4.90106 4.95302 4.99736 5.10265 5.15203 5.35743 5.36556 5.51532 5.92714 6.20414 6.38243 6.39642 7.13430 7.49431 7.92111 8.76356 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.005228 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.935314 B = 5354.986477 C = 6721.215194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.063 3.937 4 C 0.109 3.891 5 N -0.423 5.423 6 C -0.342 4.342 7 H 0.097 0.903 8 C 0.019 3.981 9 N -0.887 5.887 10 Si 0.974 3.026 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.461 3.539 15 O -0.624 6.624 16 C -0.128 4.128 17 H 0.132 0.868 18 C -0.103 4.103 19 C 0.075 3.925 20 H 0.090 0.910 21 C -0.145 4.145 22 C -0.142 4.142 23 C 0.034 3.966 24 O -0.384 6.384 25 C 0.473 3.527 26 F -0.153 7.153 27 F -0.202 7.202 28 F -0.183 7.183 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.272 0.728 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -2.963 -8.844 9.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.015 4.015 5 N -0.139 5.139 6 C -0.469 4.469 7 H 0.114 0.886 8 C -0.185 4.185 9 N -0.524 5.524 10 Si 0.798 3.202 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.192 1.192 14 C 0.249 3.751 15 O -0.513 6.513 16 C -0.150 4.150 17 H 0.150 0.850 18 C -0.142 4.142 19 C 0.017 3.983 20 H 0.108 0.892 21 C -0.183 4.183 22 C -0.179 4.179 23 C -0.043 4.043 24 O -0.304 6.304 25 C 0.419 3.581 26 F -0.134 7.134 27 F -0.183 7.183 28 F -0.165 7.165 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.697 -2.515 -8.656 9.172 hybrid contribution -0.400 -0.114 0.413 0.586 sum 1.296 -2.629 -8.242 8.748 Atomic orbital electron populations 1.22891 0.80680 1.03409 1.00184 1.88050 1.20402 1.27583 1.95298 1.22822 0.94559 0.84736 0.99375 1.21532 0.91276 0.98199 0.90454 1.43457 1.55060 1.07621 1.07775 1.19555 1.43079 0.81962 1.02318 0.88588 1.25890 0.93306 1.03527 0.95753 1.69949 1.32243 1.38588 1.11665 0.85238 0.79073 0.78442 0.77470 1.19192 1.21124 1.19158 1.20126 0.81593 0.86410 0.86956 1.90565 1.58684 1.15262 1.86757 1.22333 1.01126 1.01219 0.90328 0.85049 1.21826 0.89945 1.02207 1.00179 1.22866 0.96808 0.94381 0.84220 0.89210 1.23153 0.93252 1.04061 0.97801 1.23237 1.00380 0.99646 0.94665 1.23575 0.86316 0.98022 0.96345 1.88764 1.31322 1.75248 1.35081 1.19965 0.75248 0.78838 0.84081 1.93221 1.95219 1.76387 1.48613 1.93111 1.37370 1.94226 1.93612 1.93098 1.78261 1.48978 1.96148 0.94509 0.88628 0.92917 0.91357 0.95492 0.87451 0.92348 0.91795 0.88620 0.91563 0.90599 0.88420 0.89418 0.88304 0.88821 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.39 10.43 -148.98 -1.55 -17.94 16 3 C 0.06 2.61 6.24 71.98 0.45 3.06 16 4 C 0.11 5.22 5.33 86.38 0.46 5.68 16 5 N -0.42 -20.89 2.51 -635.54 -1.60 -22.48 16 6 C -0.34 -16.43 8.55 84.04 0.72 -15.72 16 7 H 0.10 4.37 6.20 -2.91 -0.02 4.36 16 8 C 0.02 0.89 4.96 84.93 0.42 1.31 16 9 N -0.89 -44.68 11.26 21.66 0.24 -44.43 16 10 Si 0.97 38.21 29.60 68.60 2.03 40.24 16 11 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 12 H -0.29 -11.31 7.11 99.48 0.71 -10.61 16 13 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 14 C 0.46 22.45 6.15 87.66 0.54 22.99 16 15 O -0.62 -33.70 15.28 -3.05 -0.05 -33.75 16 16 C -0.13 -5.21 1.70 -11.54 -0.02 -5.23 16 17 H 0.13 5.12 6.12 -2.39 -0.01 5.10 16 18 C -0.10 -3.68 4.20 30.59 0.13 -3.55 16 19 C 0.07 2.13 3.22 31.06 0.10 2.23 16 20 H 0.09 2.46 8.12 -2.39 -0.02 2.44 16 21 C -0.15 -3.15 6.56 31.91 0.21 -2.94 16 22 C -0.14 -2.49 7.16 32.10 0.23 -2.26 16 23 C 0.03 0.76 7.78 72.65 0.57 1.32 16 24 O -0.38 -11.59 6.47 -148.98 -0.96 -12.55 16 25 C 0.47 19.30 2.15 71.98 0.16 19.45 16 26 F -0.15 -5.64 13.23 44.97 0.59 -5.05 16 27 F -0.20 -8.83 16.50 44.97 0.74 -8.09 16 28 F -0.18 -7.88 15.28 44.97 0.69 -7.19 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 5.46 5.31 -2.39 -0.01 5.44 16 35 H 0.06 2.87 7.52 -2.39 -0.02 2.85 16 36 H 0.27 12.99 8.31 -92.71 -0.77 12.21 16 37 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.07 2.51 7.33 -2.39 -0.02 2.49 16 39 H 0.08 1.70 7.85 -2.39 -0.02 1.68 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -62.72 363.20 6.36 -56.36 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 1.02 Total: 26.53 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 5.20 Total: 28.35 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.35 Total: -66.91 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -2.57 Total: -64.24 kcal Atomic # 9 Polarization: -22.35 SS G_CDS: 2.02 Total: -20.33 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -62.72 6.36 -56.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593736933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.703 kcal (2) G-P(sol) polarization free energy of solvation -62.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds