Wall clock time and date at job start Tue Mar 31 2020 22:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00238 * 2 1 4 4 C 1.52994 * 109.47343 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47076 * 65.00393 * 4 3 2 6 6 C 1.37097 * 120.00294 * 266.66829 * 5 4 3 7 7 H 1.08000 * 120.00696 * 145.34709 * 6 5 4 8 8 C 1.38951 * 119.99491 * 325.34433 * 6 5 4 9 9 N 1.31417 * 120.00348 * 338.36918 * 8 6 5 10 10 Si 1.86805 * 119.99820 * 158.36582 * 8 6 5 11 11 H 1.48500 * 109.47066 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47045 * 120.00214 * 10 8 6 13 13 H 1.48496 * 109.46968 * 240.00071 * 10 8 6 14 14 C 1.34783 * 120.00208 * 86.65974 * 5 4 3 15 15 O 1.21293 * 119.99588 * 354.04757 * 14 5 4 16 16 C 1.50692 * 119.99968 * 173.76771 * 14 5 4 17 17 H 1.08996 * 109.47816 * 334.85716 * 16 14 5 18 18 C 1.53003 * 109.47101 * 94.85451 * 16 14 5 19 19 C 1.52998 * 109.47211 * 185.49557 * 18 16 14 20 20 H 1.08999 * 110.33691 * 302.89832 * 19 18 16 21 21 C 1.54488 * 110.37189 * 180.64415 * 19 18 16 22 22 C 1.54508 * 104.06332 * 217.19266 * 21 19 18 23 23 C 1.54480 * 104.06437 * 0.02562 * 22 21 19 24 24 O 1.44426 * 104.80198 * 23.97761 * 23 22 21 25 25 C 1.53004 * 109.47284 * 214.85203 * 16 14 5 26 26 F 1.39898 * 109.46898 * 54.39313 * 25 16 14 27 27 F 1.39894 * 109.47314 * 174.39188 * 25 16 14 28 28 F 1.39906 * 109.47132 * 294.39551 * 25 16 14 29 29 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46457 * 299.99452 * 1 2 3 31 31 H 1.08993 * 109.47154 * 59.99159 * 1 2 3 32 32 H 1.09001 * 109.46876 * 60.00674 * 3 2 1 33 33 H 1.08995 * 109.47524 * 300.00559 * 3 2 1 34 34 H 1.08999 * 109.47644 * 305.00243 * 4 3 2 35 35 H 1.09004 * 109.47436 * 185.00199 * 4 3 2 36 36 H 0.96998 * 119.99996 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46989 * 305.50181 * 18 16 14 38 38 H 1.09006 * 109.46782 * 65.49565 * 18 16 14 39 39 H 1.08998 * 110.50885 * 335.83802 * 21 19 18 40 40 H 1.08996 * 110.50802 * 98.54356 * 21 19 18 41 41 H 1.09000 * 110.50711 * 118.64070 * 22 21 19 42 42 H 1.09001 * 110.51279 * 241.21940 * 22 21 19 43 43 H 1.08997 * 110.37369 * 142.80572 * 23 22 21 44 44 H 1.08995 * 110.37135 * 265.04115 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1626 -0.7921 -1.3172 7 1 3.9355 -1.3260 -2.2282 8 6 4.6445 -1.4803 -0.2104 9 7 5.3106 -0.8389 0.7234 10 14 4.3453 -3.3172 -0.0498 11 1 3.5765 -3.7982 -1.2257 12 1 5.6481 -4.0273 0.0135 13 1 3.5741 -3.5865 1.1903 14 6 4.1967 1.3276 -2.3416 15 8 3.9286 2.5103 -2.3177 16 6 4.7826 0.7127 -3.5863 17 1 5.3586 -0.1728 -3.3177 18 6 3.6534 0.3167 -4.5397 19 6 4.2379 -0.4302 -5.7403 20 1 4.9841 0.1853 -6.2426 21 6 3.1158 -0.8263 -6.7255 22 6 3.5452 -2.2169 -7.2443 23 6 4.8756 -2.4968 -6.5106 24 8 4.8174 -1.6842 -5.3181 25 6 5.6983 1.7275 -4.2740 26 9 6.6548 2.1857 -3.3617 27 9 6.3409 1.1172 -5.3564 28 9 4.9362 2.8074 -4.7326 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8898 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8515 0.5682 0.8409 35 1 3.9786 2.1765 0.0890 36 1 5.6472 -1.3194 1.4958 37 1 2.9475 -0.3297 -4.0181 38 1 3.1383 1.2131 -4.8851 39 1 2.1585 -0.8905 -6.2083 40 1 3.0598 -0.1125 -7.5474 41 1 2.8002 -2.9685 -6.9834 42 1 3.6992 -2.1913 -8.3230 43 1 4.9491 -3.5520 -6.2475 44 1 5.7210 -2.2016 -7.1321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593736934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:32 Heat of formation + Delta-G solvation = -273.893544 kcal Electronic energy + Delta-G solvation = -32932.961887 eV Core-core repulsion = 28050.025694 eV Total energy + Delta-G solvation = -4882.936192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.53941 -47.08293 -46.87000 -39.42666 -38.70228 -37.00658 -34.80768 -33.74115 -31.94554 -31.62264 -29.66593 -28.63872 -25.85111 -25.24875 -24.79143 -23.36236 -21.93042 -21.16991 -20.82902 -19.19282 -18.12882 -18.03779 -17.37927 -16.23085 -16.10469 -16.07382 -15.63453 -15.38307 -15.20849 -15.07536 -14.42870 -14.34185 -14.16704 -13.83849 -13.79572 -13.62860 -13.39353 -13.23826 -13.09520 -13.02379 -12.80235 -12.57395 -12.25669 -12.00032 -11.69312 -11.56648 -11.52352 -11.27113 -11.19671 -11.10389 -10.99391 -10.67761 -10.64040 -10.61186 -10.43500 -10.29716 -10.04022 -9.46191 -9.17859 -8.97765 -8.53552 -7.57566 -6.37590 -4.02524 3.11851 3.28239 3.28894 3.34087 3.71568 4.03991 4.10608 4.36204 4.45087 4.53066 4.68252 4.69861 4.83640 4.94793 5.01922 5.11925 5.22171 5.37917 5.43942 5.62634 5.63750 5.65909 5.72087 5.78827 5.83250 5.89999 5.92641 5.98379 6.00575 6.06472 6.10029 6.27525 6.32464 6.32739 6.44141 6.65837 7.05319 7.25827 7.48131 7.75180 7.94594 8.34646 9.06660 9.39463 9.81731 10.64203 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009635 B = 0.005561 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.288905 B = 5033.848607 C = 5821.932938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.053 3.947 4 C 0.112 3.888 5 N -0.412 5.412 6 C -0.329 4.329 7 H 0.095 0.905 8 C 0.053 3.947 9 N -0.857 5.857 10 Si 0.917 3.083 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.280 1.280 14 C 0.467 3.533 15 O -0.597 6.597 16 C -0.137 4.137 17 H 0.144 0.856 18 C -0.100 4.100 19 C 0.056 3.944 20 H 0.087 0.913 21 C -0.150 4.150 22 C -0.154 4.154 23 C 0.044 3.956 24 O -0.357 6.357 25 C 0.467 3.533 26 F -0.179 7.179 27 F -0.187 7.187 28 F -0.176 7.176 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.270 0.730 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 -1.818 -10.094 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.025 4.025 4 C -0.012 4.012 5 N -0.128 5.128 6 C -0.456 4.456 7 H 0.113 0.887 8 C -0.153 4.153 9 N -0.493 5.493 10 Si 0.744 3.256 11 H -0.190 1.190 12 H -0.210 1.210 13 H -0.206 1.206 14 C 0.254 3.746 15 O -0.484 6.484 16 C -0.159 4.159 17 H 0.161 0.839 18 C -0.138 4.138 19 C -0.002 4.002 20 H 0.105 0.895 21 C -0.188 4.188 22 C -0.192 4.192 23 C -0.033 4.033 24 O -0.276 6.276 25 C 0.413 3.587 26 F -0.160 7.160 27 F -0.169 7.169 28 F -0.157 7.157 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.215 -1.494 -9.643 10.629 hybrid contribution -0.298 -0.598 -0.131 0.681 sum -4.513 -2.092 -9.774 10.967 Atomic orbital electron populations 1.22640 0.83461 1.01701 0.98829 1.88136 1.17325 1.27704 1.95042 1.23003 0.96378 0.84337 0.98766 1.21575 0.89454 0.99126 0.91012 1.43298 1.54826 1.06850 1.07843 1.19464 1.43709 0.81063 1.01361 0.88709 1.25269 0.93578 1.00152 0.96328 1.69900 1.30832 1.37435 1.11163 0.86037 0.78038 0.82826 0.78737 1.18991 1.21028 1.20560 1.19525 0.83507 0.86018 0.85543 1.90597 1.57817 1.15740 1.84214 1.22359 0.98246 0.99089 0.96241 0.83872 1.21563 0.97000 1.00917 0.94322 1.23500 0.94620 0.87433 0.94635 0.89514 1.22977 0.99917 0.96701 0.99182 1.22924 0.98351 0.97537 1.00387 1.23343 0.96263 0.96506 0.87222 1.89247 1.83224 1.25401 1.29734 1.20257 0.80082 0.81783 0.76582 1.93176 1.66074 1.90007 1.66789 1.93033 1.83420 1.83001 1.57436 1.93157 1.75383 1.57850 1.89356 0.90454 0.95183 0.95003 0.94267 0.93923 0.86225 0.91135 0.91995 0.88502 0.89467 0.90472 0.90698 0.90819 0.90930 0.89304 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.61 10.34 -35.23 -0.36 -7.97 16 3 C 0.05 1.08 6.26 37.15 0.23 1.32 16 4 C 0.11 2.63 5.30 -4.04 -0.02 2.61 16 5 N -0.41 -10.15 2.51 -114.82 -0.29 -10.44 16 6 C -0.33 -8.19 7.81 -14.93 -0.12 -8.31 16 7 H 0.10 2.32 6.72 -52.49 -0.35 1.97 16 8 C 0.05 1.34 4.95 -17.46 -0.09 1.25 16 9 N -0.86 -22.31 11.32 55.50 0.63 -21.68 16 10 Si 0.92 20.00 29.60 -169.99 -5.03 14.97 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 C 0.47 11.15 6.21 -10.99 -0.07 11.08 16 15 O -0.60 -15.34 15.30 5.55 0.08 -15.25 16 16 C -0.14 -2.81 1.50 -91.77 -0.14 -2.95 16 17 H 0.14 3.11 6.38 -51.93 -0.33 2.78 16 18 C -0.10 -1.73 4.13 -26.73 -0.11 -1.84 16 19 C 0.06 0.83 2.83 -25.95 -0.07 0.76 16 20 H 0.09 1.30 5.34 -51.93 -0.28 1.02 16 21 C -0.15 -1.77 6.63 -25.16 -0.17 -1.94 16 22 C -0.15 -1.62 7.09 -25.16 -0.18 -1.79 16 23 C 0.04 0.54 7.63 37.93 0.29 0.83 16 24 O -0.36 -5.89 10.86 -35.23 -0.38 -6.27 16 25 C 0.47 9.29 2.49 37.16 0.09 9.38 16 26 F -0.18 -3.91 16.86 2.25 0.04 -3.87 16 27 F -0.19 -3.30 14.16 2.25 0.03 -3.27 16 28 F -0.18 -3.52 15.41 2.25 0.03 -3.48 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.12 3.01 5.35 -51.93 -0.28 2.73 16 35 H 0.07 1.67 7.62 -51.93 -0.40 1.27 16 36 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.10 1.75 7.69 -51.93 -0.40 1.35 16 38 H 0.09 1.44 7.50 -51.93 -0.39 1.05 16 39 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -29.40 365.71 -5.17 -34.56 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.19 Total: 5.20 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 0.77 Total: 11.99 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.34 Total: -32.12 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.66 Total: -29.49 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 0.10 Total: -10.62 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.40 -5.17 -34.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593736934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.330 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds