Wall clock time and date at job start Tue Mar 31 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00238 * 2 1 4 4 C 1.52994 * 109.47343 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47076 * 65.00393 * 4 3 2 6 6 C 1.37097 * 120.00294 * 266.66829 * 5 4 3 7 7 H 1.08000 * 120.00696 * 145.34709 * 6 5 4 8 8 C 1.38951 * 119.99491 * 325.34433 * 6 5 4 9 9 N 1.31417 * 120.00348 * 338.36918 * 8 6 5 10 10 Si 1.86805 * 119.99820 * 158.36582 * 8 6 5 11 11 H 1.48500 * 109.47066 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47045 * 120.00214 * 10 8 6 13 13 H 1.48496 * 109.46968 * 240.00071 * 10 8 6 14 14 C 1.34783 * 120.00208 * 86.65974 * 5 4 3 15 15 O 1.21293 * 119.99588 * 354.04757 * 14 5 4 16 16 C 1.50692 * 119.99968 * 173.76771 * 14 5 4 17 17 H 1.08996 * 109.47816 * 334.85716 * 16 14 5 18 18 C 1.53003 * 109.47101 * 94.85451 * 16 14 5 19 19 C 1.52998 * 109.47211 * 185.49557 * 18 16 14 20 20 H 1.08999 * 110.33691 * 302.89832 * 19 18 16 21 21 C 1.54488 * 110.37189 * 180.64415 * 19 18 16 22 22 C 1.54508 * 104.06332 * 217.19266 * 21 19 18 23 23 C 1.54480 * 104.06437 * 0.02562 * 22 21 19 24 24 O 1.44426 * 104.80198 * 23.97761 * 23 22 21 25 25 C 1.53004 * 109.47284 * 214.85203 * 16 14 5 26 26 F 1.39898 * 109.46898 * 54.39313 * 25 16 14 27 27 F 1.39894 * 109.47314 * 174.39188 * 25 16 14 28 28 F 1.39906 * 109.47132 * 294.39551 * 25 16 14 29 29 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46457 * 299.99452 * 1 2 3 31 31 H 1.08993 * 109.47154 * 59.99159 * 1 2 3 32 32 H 1.09001 * 109.46876 * 60.00674 * 3 2 1 33 33 H 1.08995 * 109.47524 * 300.00559 * 3 2 1 34 34 H 1.08999 * 109.47644 * 305.00243 * 4 3 2 35 35 H 1.09004 * 109.47436 * 185.00199 * 4 3 2 36 36 H 0.96998 * 119.99996 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.46989 * 305.50181 * 18 16 14 38 38 H 1.09006 * 109.46782 * 65.49565 * 18 16 14 39 39 H 1.08998 * 110.50885 * 335.83802 * 21 19 18 40 40 H 1.08996 * 110.50802 * 98.54356 * 21 19 18 41 41 H 1.09000 * 110.50711 * 118.64070 * 22 21 19 42 42 H 1.09001 * 110.51279 * 241.21940 * 22 21 19 43 43 H 1.08997 * 110.37369 * 142.80572 * 23 22 21 44 44 H 1.08995 * 110.37135 * 265.04115 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.1626 -0.7921 -1.3172 7 1 3.9355 -1.3260 -2.2282 8 6 4.6445 -1.4803 -0.2104 9 7 5.3106 -0.8389 0.7234 10 14 4.3453 -3.3172 -0.0498 11 1 3.5765 -3.7982 -1.2257 12 1 5.6481 -4.0273 0.0135 13 1 3.5741 -3.5865 1.1903 14 6 4.1967 1.3276 -2.3416 15 8 3.9286 2.5103 -2.3177 16 6 4.7826 0.7127 -3.5863 17 1 5.3586 -0.1728 -3.3177 18 6 3.6534 0.3167 -4.5397 19 6 4.2379 -0.4302 -5.7403 20 1 4.9841 0.1853 -6.2426 21 6 3.1158 -0.8263 -6.7255 22 6 3.5452 -2.2169 -7.2443 23 6 4.8756 -2.4968 -6.5106 24 8 4.8174 -1.6842 -5.3181 25 6 5.6983 1.7275 -4.2740 26 9 6.6548 2.1857 -3.3617 27 9 6.3409 1.1172 -5.3564 28 9 4.9362 2.8074 -4.7326 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8898 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8515 0.5682 0.8409 35 1 3.9786 2.1765 0.0890 36 1 5.6472 -1.3194 1.4958 37 1 2.9475 -0.3297 -4.0181 38 1 3.1383 1.2131 -4.8851 39 1 2.1585 -0.8905 -6.2083 40 1 3.0598 -0.1125 -7.5474 41 1 2.8002 -2.9685 -6.9834 42 1 3.6992 -2.1913 -8.3230 43 1 4.9491 -3.5520 -6.2475 44 1 5.7210 -2.2016 -7.1321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593736934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:31 Heat of formation + Delta-G solvation = -291.524394 kcal Electronic energy + Delta-G solvation = -32933.726418 eV Core-core repulsion = 28050.025694 eV Total energy + Delta-G solvation = -4883.700723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.15547 -48.67860 -48.52589 -40.92194 -40.14295 -38.58165 -36.68472 -35.26353 -33.54580 -32.94636 -31.19136 -30.06499 -27.29650 -26.65023 -26.54912 -24.91448 -23.30662 -22.53577 -21.94000 -21.03508 -19.80072 -19.65701 -19.07066 -17.87666 -17.72872 -17.24752 -17.11494 -16.98870 -16.61179 -16.27506 -16.07836 -16.00496 -15.79475 -15.43507 -15.37620 -15.08028 -14.88801 -14.74107 -14.69883 -14.54327 -14.43742 -14.02711 -13.64297 -13.51815 -13.29989 -13.01473 -12.92530 -12.78979 -12.62709 -12.53490 -12.42899 -12.37151 -12.04600 -11.94205 -11.85144 -11.77621 -11.39947 -11.03832 -10.60981 -10.53581 -10.37166 -9.50918 -8.29241 -5.99146 1.35989 1.50008 1.60054 1.62347 1.95272 2.31558 2.62554 2.79173 2.98144 3.01236 3.11059 3.15525 3.40263 3.65891 3.72777 4.02040 4.06525 4.12432 4.20676 4.27308 4.33462 4.41025 4.48969 4.55161 4.61149 4.62109 4.63910 4.67269 4.78157 4.85604 4.86909 4.93710 4.99181 5.00914 5.17592 5.24077 5.36383 5.53345 5.91515 6.00890 6.40612 6.42452 7.12963 7.48843 7.90766 8.73408 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009635 B = 0.005561 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.288905 B = 5033.848607 C = 5821.932938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.108 3.892 5 N -0.422 5.422 6 C -0.334 4.334 7 H 0.095 0.905 8 C 0.016 3.984 9 N -0.886 5.886 10 Si 0.975 3.025 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.458 3.542 15 O -0.621 6.621 16 C -0.130 4.130 17 H 0.129 0.871 18 C -0.093 4.093 19 C 0.056 3.944 20 H 0.087 0.913 21 C -0.147 4.147 22 C -0.147 4.147 23 C 0.033 3.967 24 O -0.392 6.392 25 C 0.472 3.528 26 F -0.193 7.193 27 F -0.171 7.171 28 F -0.175 7.175 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.561 -3.043 -11.595 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.012 4.012 4 C -0.015 4.015 5 N -0.137 5.137 6 C -0.461 4.461 7 H 0.113 0.887 8 C -0.188 4.188 9 N -0.523 5.523 10 Si 0.799 3.201 11 H -0.184 1.184 12 H -0.208 1.208 13 H -0.205 1.205 14 C 0.247 3.753 15 O -0.509 6.509 16 C -0.153 4.153 17 H 0.147 0.853 18 C -0.130 4.130 19 C -0.001 4.001 20 H 0.104 0.896 21 C -0.185 4.185 22 C -0.184 4.184 23 C -0.043 4.043 24 O -0.312 6.312 25 C 0.417 3.583 26 F -0.175 7.175 27 F -0.152 7.152 28 F -0.156 7.156 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.408 -2.727 -11.155 12.693 hybrid contribution 0.076 -0.192 0.340 0.398 sum -5.333 -2.919 -10.815 12.406 Atomic orbital electron populations 1.22883 0.80694 1.03311 1.00239 1.88067 1.20381 1.27653 1.95307 1.22765 0.94193 0.84696 0.99557 1.21544 0.91835 0.97895 0.90274 1.43488 1.54914 1.07031 1.08266 1.19589 1.43705 0.81274 1.01567 0.88706 1.25971 0.93198 1.03659 0.95954 1.69982 1.31717 1.38899 1.11731 0.85160 0.77849 0.78427 0.78644 1.18387 1.20792 1.20503 1.20027 0.83099 0.85833 0.86390 1.90565 1.58836 1.16662 1.84839 1.22267 0.99069 0.98236 0.95702 0.85295 1.21550 0.95658 1.01301 0.94540 1.23472 0.95718 0.87059 0.93881 0.89556 1.22987 0.98481 0.98096 0.98926 1.22916 0.97252 0.96601 1.01639 1.23609 0.97826 0.96490 0.86379 1.89211 1.83606 1.26228 1.32160 1.20121 0.79778 0.81608 0.76785 1.93149 1.66611 1.90198 1.67510 1.93066 1.83087 1.82652 1.56425 1.93156 1.75375 1.57837 1.89280 0.88821 0.93106 0.94168 0.91606 0.94787 0.87871 0.92350 0.91798 0.89545 0.88851 0.90582 0.88620 0.90279 0.88367 0.88458 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.22 10.34 -148.98 -1.54 -17.76 16 3 C 0.07 2.68 6.26 71.98 0.45 3.13 16 4 C 0.11 5.21 5.30 86.38 0.46 5.66 16 5 N -0.42 -21.20 2.51 -635.55 -1.60 -22.80 16 6 C -0.33 -16.86 7.81 84.04 0.66 -16.20 16 7 H 0.10 4.71 6.72 -2.91 -0.02 4.69 16 8 C 0.02 0.80 4.95 84.93 0.42 1.22 16 9 N -0.89 -46.88 11.32 21.66 0.25 -46.63 16 10 Si 0.97 40.88 29.60 68.60 2.03 42.91 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 13 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 14 C 0.46 22.33 6.21 87.65 0.54 22.88 16 15 O -0.62 -32.50 15.30 -3.07 -0.05 -32.54 16 16 C -0.13 -5.41 1.50 -11.54 -0.02 -5.43 16 17 H 0.13 5.74 6.38 -2.39 -0.02 5.72 16 18 C -0.09 -3.17 4.13 30.59 0.13 -3.04 16 19 C 0.06 1.60 2.83 31.10 0.09 1.69 16 20 H 0.09 2.45 5.34 -2.39 -0.01 2.44 16 21 C -0.15 -3.11 6.63 31.61 0.21 -2.90 16 22 C -0.15 -2.61 7.09 31.61 0.22 -2.39 16 23 C 0.03 0.75 7.63 72.49 0.55 1.30 16 24 O -0.39 -12.54 10.86 -148.98 -1.62 -14.16 16 25 C 0.47 18.73 2.49 71.98 0.18 18.91 16 26 F -0.19 -8.54 16.86 44.97 0.76 -7.79 16 27 F -0.17 -5.88 14.16 44.97 0.64 -5.24 16 28 F -0.18 -6.93 15.41 44.97 0.69 -6.24 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 5.34 5.35 -2.39 -0.01 5.33 16 35 H 0.06 2.87 7.62 -2.39 -0.02 2.85 16 36 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 37 H 0.09 3.12 7.69 -2.39 -0.02 3.10 16 38 H 0.09 3.03 7.50 -2.38 -0.02 3.02 16 39 H 0.08 1.62 7.87 -2.39 -0.02 1.60 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -63.47 365.71 5.73 -57.75 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 1.02 Total: 25.68 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 5.14 Total: 26.82 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.35 Total: -69.43 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -3.20 Total: -64.46 kcal Atomic # 9 Polarization: -21.36 SS G_CDS: 2.09 Total: -19.27 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -63.47 5.73 -57.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593736934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.777 kcal (2) G-P(sol) polarization free energy of solvation -63.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -297.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -291.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds