Wall clock time and date at job start Tue Mar 31 2020 22:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86806 * 119.99422 * 2 1 4 4 H 1.48495 * 109.47045 * 89.99781 * 3 2 1 5 5 H 1.48496 * 109.46563 * 209.99902 * 3 2 1 6 6 H 1.48501 * 109.46903 * 329.99503 * 3 2 1 7 7 C 1.40264 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99881 * 160.74122 * 7 2 1 9 9 C 1.40885 * 120.00263 * 340.74689 * 7 2 1 10 10 C 1.40712 * 120.32562 * 325.79222 * 9 7 2 11 11 C 1.37601 * 119.87956 * 179.97438 * 10 9 7 12 12 C 1.38829 * 120.56944 * 0.02562 * 11 10 9 13 13 C 1.38213 * 120.67951 * 0.02562 * 12 11 10 14 14 C 1.39235 * 120.09167 * 359.69388 * 13 12 11 15 15 C 1.47435 * 120.28378 * 180.28304 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.67695 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.68142 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47394 * 179.97438 * 18 17 15 20 20 H 1.08998 * 109.47396 * 304.99903 * 19 18 17 21 21 C 1.53000 * 109.46994 * 65.00305 * 19 18 17 22 22 O 1.42901 * 109.47370 * 185.00206 * 21 19 18 23 23 C 1.53007 * 109.47360 * 184.99982 * 19 18 17 24 24 C 1.50701 * 109.46903 * 175.00084 * 23 19 18 25 25 C 1.38231 * 119.99971 * 269.72312 * 24 23 19 26 26 C 1.38238 * 119.99775 * 179.76991 * 25 24 23 27 27 C 1.38238 * 119.99839 * 0.51144 * 26 25 24 28 28 C 1.38237 * 119.99975 * 359.74505 * 27 26 25 29 29 C 1.38228 * 120.00065 * 359.97438 * 28 27 26 30 30 H 0.97001 * 119.99332 * 174.83487 * 1 2 3 31 31 H 1.08002 * 120.05925 * 359.95576 * 10 9 7 32 32 H 1.08002 * 119.70941 * 180.02562 * 11 10 9 33 33 H 1.08002 * 119.65972 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.95839 * 179.97438 * 13 12 11 35 35 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 36 36 H 1.09004 * 109.47039 * 299.99900 * 18 17 15 37 37 H 1.09005 * 109.47040 * 59.99578 * 18 17 15 38 38 H 1.09004 * 109.46995 * 304.99638 * 21 19 18 39 39 H 1.08997 * 109.47510 * 65.00024 * 21 19 18 40 40 H 0.96695 * 114.00019 * 179.97438 * 22 21 19 41 41 H 1.09000 * 109.47133 * 295.00337 * 23 19 18 42 42 H 1.08997 * 109.46666 * 54.99842 * 23 19 18 43 43 H 1.08004 * 120.00025 * 0.02562 * 25 24 23 44 44 H 1.08002 * 119.99916 * 180.23354 * 26 25 24 45 45 H 1.07998 * 119.99887 * 179.72363 * 27 26 25 46 46 H 1.07997 * 119.99776 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.00130 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 2.4876 2.0466 1.4000 5 1 3.5377 1.4403 -0.7000 6 1 1.4375 2.6527 -0.7002 7 6 2.0077 -1.2147 0.0005 8 1 3.0424 -1.2409 -0.3080 9 6 1.3625 -2.4006 0.4034 10 6 0.3865 -2.3694 1.4165 11 6 -0.2383 -3.5331 1.8024 12 6 0.0858 -4.7415 1.2009 13 6 1.0416 -4.7992 0.2042 14 6 1.6871 -3.6378 -0.2120 15 6 2.7029 -3.6935 -1.2792 16 8 3.2197 -2.6685 -1.6807 17 7 3.0586 -4.8803 -1.8097 18 6 4.0683 -4.9357 -2.8696 19 6 4.2859 -6.3902 -3.2912 20 1 4.5412 -6.9879 -2.4162 21 6 3.0041 -6.9347 -3.9246 22 8 3.1681 -8.3249 -4.2122 23 6 5.4271 -6.4612 -4.3080 24 6 5.7233 -7.9032 -4.6306 25 6 6.6579 -8.5999 -3.8877 26 6 6.9261 -9.9239 -4.1807 27 6 6.2672 -10.5482 -5.2234 28 6 5.3364 -9.8500 -5.9697 29 6 5.0641 -8.5276 -5.6730 30 1 -0.4849 -0.8367 -0.0756 31 1 0.1285 -1.4339 1.8906 32 1 -0.9873 -3.5060 2.5801 33 1 -0.4135 -5.6461 1.5155 34 1 1.2850 -5.7456 -0.2556 35 1 2.6461 -5.6977 -1.4897 36 1 3.7272 -4.3556 -3.7271 37 1 5.0061 -4.5206 -2.5001 38 1 2.1723 -6.8026 -3.2326 39 1 2.7973 -6.3946 -4.8485 40 1 2.3923 -8.7372 -4.6160 41 1 5.1358 -5.9376 -5.2184 42 1 6.3172 -5.9926 -3.8883 43 1 7.1756 -8.1109 -3.0757 44 1 7.6536 -10.4693 -3.5979 45 1 6.4800 -11.5814 -5.4551 46 1 4.8220 -10.3376 -6.7845 47 1 4.3372 -7.9820 -6.2563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601196823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:45 Heat of formation + Delta-G solvation = -53.886895 kcal Electronic energy + Delta-G solvation = -28472.205769 eV Core-core repulsion = 24583.808535 eV Total energy + Delta-G solvation = -3888.397234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.74872 -39.01466 -37.59995 -36.82878 -35.10973 -34.03530 -33.11415 -30.88252 -30.81615 -29.79743 -29.27911 -26.17744 -25.85999 -24.89207 -22.61342 -22.41707 -21.47329 -20.88452 -20.36282 -19.43438 -18.14793 -17.49342 -16.81074 -16.32400 -16.00614 -15.50893 -15.00042 -14.75912 -14.74918 -14.67388 -14.10985 -14.01894 -13.75684 -13.58327 -13.39463 -13.19588 -12.85376 -12.69330 -12.59802 -12.23672 -12.20379 -11.87467 -11.71499 -11.45502 -11.15522 -11.08014 -10.92973 -10.86691 -10.76989 -10.69354 -10.38515 -10.18197 -10.14373 -9.63697 -9.09631 -8.85224 -8.57740 -8.50581 -8.41973 -7.81441 -7.63059 -7.16375 -4.48257 1.36668 1.45021 2.21615 2.71192 3.18929 3.29672 3.40680 3.71524 3.94324 4.01750 4.03716 4.09457 4.59291 4.63026 4.73513 4.87508 4.92825 4.98563 5.05547 5.23043 5.31659 5.41045 5.43296 5.51831 5.53093 5.61844 5.66422 5.76630 5.83815 5.89503 6.01259 6.03492 6.07504 6.12944 6.21033 6.45083 6.48423 6.49547 6.66166 6.69301 6.96513 7.01648 7.06022 7.25629 7.46940 7.48831 7.58604 7.69917 7.86806 8.06818 8.19294 8.33333 8.71072 8.84227 9.32623 10.02427 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.002421 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.177120 B =11564.912433 C =12532.527223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.031 3.969 3 Si 1.073 2.927 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.466 4.466 8 H 0.106 0.894 9 C 0.120 3.880 10 C -0.200 4.200 11 C -0.076 4.076 12 C -0.259 4.259 13 C -0.043 4.043 14 C -0.266 4.266 15 C 0.563 3.437 16 O -0.536 6.536 17 N -0.750 5.750 18 C 0.131 3.869 19 C -0.091 4.091 20 H 0.084 0.916 21 C 0.077 3.923 22 O -0.556 6.556 23 C -0.072 4.072 24 C -0.065 4.065 25 C -0.117 4.117 26 C -0.129 4.129 27 C -0.126 4.126 28 C -0.131 4.131 29 C -0.064 4.064 30 H 0.298 0.702 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.391 0.609 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.369 0.631 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.605 -15.777 -9.398 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.191 4.191 3 Si 0.896 3.104 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.124 0.876 9 C 0.116 3.884 10 C -0.220 4.220 11 C -0.095 4.095 12 C -0.279 4.279 13 C -0.062 4.062 14 C -0.271 4.271 15 C 0.357 3.643 16 O -0.415 6.415 17 N -0.406 5.406 18 C 0.007 3.993 19 C -0.110 4.110 20 H 0.102 0.898 21 C 0.000 4.000 22 O -0.361 6.361 23 C -0.110 4.110 24 C -0.066 4.066 25 C -0.135 4.135 26 C -0.147 4.147 27 C -0.144 4.144 28 C -0.149 4.149 29 C -0.082 4.082 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.226 0.774 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.216 0.784 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.328 -13.233 -9.397 18.242 hybrid contribution -0.859 -2.452 0.000 2.598 sum 7.469 -15.685 -9.397 19.751 Atomic orbital electron populations 1.70367 1.08255 1.34319 1.28760 1.27274 0.95697 1.04714 0.91409 0.83522 0.75737 0.73119 0.78025 1.20046 1.19729 1.20148 1.21207 1.01690 0.91890 1.34447 0.87641 1.17515 0.89723 0.92074 0.89134 1.21260 1.02975 0.97118 1.00598 1.20748 0.97650 0.93194 0.97879 1.20242 1.05884 0.96706 1.05059 1.20702 0.94869 0.95293 0.95370 1.19392 1.07934 0.95310 1.04431 1.18376 0.82049 0.82073 0.81790 1.90683 1.55295 1.33085 1.62410 1.46057 1.44068 1.09664 1.40795 1.21124 0.92933 0.94099 0.91177 1.21410 0.94511 0.96006 0.99057 0.89750 1.22210 0.96956 0.82264 0.98611 1.86756 1.41842 1.22990 1.84489 1.20551 0.98248 0.93065 0.99146 1.19625 0.95875 0.95581 0.95476 1.20986 0.98369 0.94615 0.99514 1.21009 1.00475 0.95031 0.98160 1.21021 0.97550 0.99446 0.96413 1.21008 0.98873 0.94895 1.00124 1.20738 0.96774 0.94469 0.96211 0.88797 0.87523 0.88865 0.88911 0.89248 0.77434 0.91909 0.91456 0.93470 0.93587 0.78403 0.90835 0.90631 0.86661 0.86754 0.86903 0.86845 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.17 12.57 55.56 0.70 -20.47 16 2 C 0.03 0.79 5.04 -17.30 -0.09 0.71 16 3 Si 1.07 22.49 29.98 -169.99 -5.10 17.39 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.47 -12.72 7.65 -37.82 -0.29 -13.01 16 8 H 0.11 3.02 5.93 -52.48 -0.31 2.71 16 9 C 0.12 3.18 5.17 -106.54 -0.55 2.62 16 10 C -0.20 -4.97 7.87 -38.88 -0.31 -5.27 16 11 C -0.08 -1.67 10.01 -39.60 -0.40 -2.06 16 12 C -0.26 -5.40 10.03 -39.37 -0.39 -5.79 16 13 C -0.04 -0.91 9.53 -39.22 -0.37 -1.28 16 14 C -0.27 -6.39 5.92 -104.36 -0.62 -7.01 16 15 C 0.56 12.82 7.73 -12.52 -0.10 12.72 16 16 O -0.54 -14.00 13.56 5.27 0.07 -13.93 16 17 N -0.75 -12.80 5.18 -61.38 -0.32 -13.12 16 18 C 0.13 1.86 5.06 -4.05 -0.02 1.84 16 19 C -0.09 -1.01 2.26 -90.62 -0.20 -1.21 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 21 C 0.08 0.78 6.23 37.16 0.23 1.01 16 22 O -0.56 -5.22 9.04 -35.23 -0.32 -5.54 16 23 C -0.07 -0.73 4.84 -27.88 -0.13 -0.86 16 24 C -0.07 -0.69 4.26 -104.62 -0.45 -1.13 16 25 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 26 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 28 C -0.13 -1.21 10.05 -39.59 -0.40 -1.61 16 29 C -0.06 -0.62 6.62 -39.58 -0.26 -0.89 16 30 H 0.30 8.13 6.55 -40.82 -0.27 7.86 16 31 H 0.11 2.70 6.94 -52.49 -0.36 2.33 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.09 1.54 6.41 -52.49 -0.34 1.20 16 35 H 0.39 5.86 5.69 -40.82 -0.23 5.63 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.51 7.07 -51.93 -0.37 0.14 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.37 2.21 9.12 45.56 0.42 2.63 16 41 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 42 H 0.08 0.72 8.08 -51.93 -0.42 0.31 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.11 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.11 0.98 7.80 -52.48 -0.41 0.57 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -31.11 382.33 -10.46 -41.57 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -5.74 Total: 14.43 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -5.53 Total: -26.10 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.38 Total: -33.59 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.25 Total: -19.47 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.10 Total: 17.39 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.11 -10.46 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601196823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.315 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds