Wall clock time and date at job start Tue Mar 31 2020 22:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86806 * 119.99422 * 2 1 4 4 H 1.48495 * 109.47045 * 89.99781 * 3 2 1 5 5 H 1.48496 * 109.46563 * 209.99902 * 3 2 1 6 6 H 1.48501 * 109.46903 * 329.99503 * 3 2 1 7 7 C 1.40264 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99881 * 160.74122 * 7 2 1 9 9 C 1.40885 * 120.00263 * 340.74689 * 7 2 1 10 10 C 1.40712 * 120.32562 * 325.79222 * 9 7 2 11 11 C 1.37601 * 119.87956 * 179.97438 * 10 9 7 12 12 C 1.38829 * 120.56944 * 0.02562 * 11 10 9 13 13 C 1.38213 * 120.67951 * 0.02562 * 12 11 10 14 14 C 1.39235 * 120.09167 * 359.69388 * 13 12 11 15 15 C 1.47435 * 120.28378 * 180.28304 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.67695 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.68142 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47394 * 179.97438 * 18 17 15 20 20 H 1.08998 * 109.47396 * 304.99903 * 19 18 17 21 21 C 1.53000 * 109.46994 * 65.00305 * 19 18 17 22 22 O 1.42901 * 109.47370 * 185.00206 * 21 19 18 23 23 C 1.53007 * 109.47360 * 184.99982 * 19 18 17 24 24 C 1.50701 * 109.46903 * 175.00084 * 23 19 18 25 25 C 1.38231 * 119.99971 * 269.72312 * 24 23 19 26 26 C 1.38238 * 119.99775 * 179.76991 * 25 24 23 27 27 C 1.38238 * 119.99839 * 0.51144 * 26 25 24 28 28 C 1.38237 * 119.99975 * 359.74505 * 27 26 25 29 29 C 1.38228 * 120.00065 * 359.97438 * 28 27 26 30 30 H 0.97001 * 119.99332 * 174.83487 * 1 2 3 31 31 H 1.08002 * 120.05925 * 359.95576 * 10 9 7 32 32 H 1.08002 * 119.70941 * 180.02562 * 11 10 9 33 33 H 1.08002 * 119.65972 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.95839 * 179.97438 * 13 12 11 35 35 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 36 36 H 1.09004 * 109.47039 * 299.99900 * 18 17 15 37 37 H 1.09005 * 109.47040 * 59.99578 * 18 17 15 38 38 H 1.09004 * 109.46995 * 304.99638 * 21 19 18 39 39 H 1.08997 * 109.47510 * 65.00024 * 21 19 18 40 40 H 0.96695 * 114.00019 * 179.97438 * 22 21 19 41 41 H 1.09000 * 109.47133 * 295.00337 * 23 19 18 42 42 H 1.08997 * 109.46666 * 54.99842 * 23 19 18 43 43 H 1.08004 * 120.00025 * 0.02562 * 25 24 23 44 44 H 1.08002 * 119.99916 * 180.23354 * 26 25 24 45 45 H 1.07998 * 119.99887 * 179.72363 * 27 26 25 46 46 H 1.07997 * 119.99776 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.00130 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 2.4876 2.0466 1.4000 5 1 3.5377 1.4403 -0.7000 6 1 1.4375 2.6527 -0.7002 7 6 2.0077 -1.2147 0.0005 8 1 3.0424 -1.2409 -0.3080 9 6 1.3625 -2.4006 0.4034 10 6 0.3865 -2.3694 1.4165 11 6 -0.2383 -3.5331 1.8024 12 6 0.0858 -4.7415 1.2009 13 6 1.0416 -4.7992 0.2042 14 6 1.6871 -3.6378 -0.2120 15 6 2.7029 -3.6935 -1.2792 16 8 3.2197 -2.6685 -1.6807 17 7 3.0586 -4.8803 -1.8097 18 6 4.0683 -4.9357 -2.8696 19 6 4.2859 -6.3902 -3.2912 20 1 4.5412 -6.9879 -2.4162 21 6 3.0041 -6.9347 -3.9246 22 8 3.1681 -8.3249 -4.2122 23 6 5.4271 -6.4612 -4.3080 24 6 5.7233 -7.9032 -4.6306 25 6 6.6579 -8.5999 -3.8877 26 6 6.9261 -9.9239 -4.1807 27 6 6.2672 -10.5482 -5.2234 28 6 5.3364 -9.8500 -5.9697 29 6 5.0641 -8.5276 -5.6730 30 1 -0.4849 -0.8367 -0.0756 31 1 0.1285 -1.4339 1.8906 32 1 -0.9873 -3.5060 2.5801 33 1 -0.4135 -5.6461 1.5155 34 1 1.2850 -5.7456 -0.2556 35 1 2.6461 -5.6977 -1.4897 36 1 3.7272 -4.3556 -3.7271 37 1 5.0061 -4.5206 -2.5001 38 1 2.1723 -6.8026 -3.2326 39 1 2.7973 -6.3946 -4.8485 40 1 2.3923 -8.7372 -4.6160 41 1 5.1358 -5.9376 -5.2184 42 1 6.3172 -5.9926 -3.8883 43 1 7.1756 -8.1109 -3.0757 44 1 7.6536 -10.4693 -3.5979 45 1 6.4800 -11.5814 -5.4551 46 1 4.8220 -10.3376 -6.7845 47 1 4.3372 -7.9820 -6.2563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601196823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:43 Heat of formation + Delta-G solvation = -72.049133 kcal Electronic energy + Delta-G solvation = -28472.993343 eV Core-core repulsion = 24583.808535 eV Total energy + Delta-G solvation = -3889.184807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.96816 -40.28049 -38.95091 -38.12016 -36.28819 -35.78033 -34.36327 -32.17121 -31.58682 -31.42161 -30.86642 -27.47409 -26.88999 -26.43626 -24.04538 -23.32216 -22.83705 -22.25483 -21.48826 -20.90946 -19.94416 -18.51472 -17.81729 -17.53545 -17.02661 -16.71673 -16.52173 -16.17439 -15.91333 -15.74538 -15.57457 -15.49849 -15.31578 -14.98601 -14.42760 -14.13674 -14.09120 -13.86896 -13.85296 -13.55949 -13.50620 -13.22337 -12.91464 -12.75754 -12.68540 -12.50160 -12.34980 -12.05752 -11.94784 -11.82676 -11.67382 -11.52338 -11.44568 -10.96265 -10.89310 -10.37475 -10.01995 -9.61535 -9.57611 -9.50446 -9.26505 -9.10480 -6.46640 0.39257 0.63133 0.72647 0.89601 1.46134 1.61856 1.76811 2.24615 2.30539 2.39258 2.73886 3.07289 3.26027 3.55546 3.71085 3.91429 4.07969 4.15697 4.20351 4.25370 4.30946 4.35252 4.41694 4.44598 4.51204 4.56213 4.58756 4.71898 4.75201 4.80640 4.86559 4.88474 4.89768 5.02222 5.13186 5.20214 5.32757 5.34988 5.42203 5.56367 5.65143 5.70463 5.73693 5.78753 5.88869 5.91897 5.96247 6.19598 6.31516 6.32843 6.66891 6.84526 6.91351 6.93100 7.59327 8.04117 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.002421 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.177120 B =11564.912433 C =12532.527223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C -0.003 4.003 3 Si 1.117 2.883 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.095 3.905 10 C -0.225 4.225 11 C -0.072 4.072 12 C -0.245 4.245 13 C -0.041 4.041 14 C -0.283 4.283 15 C 0.558 3.442 16 O -0.578 6.578 17 N -0.728 5.728 18 C 0.132 3.868 19 C -0.077 4.077 20 H 0.079 0.921 21 C 0.083 3.917 22 O -0.562 6.562 23 C -0.069 4.069 24 C -0.077 4.077 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.134 4.134 28 C -0.136 4.136 29 C -0.068 4.068 30 H 0.283 0.717 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.404 0.596 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.386 0.614 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 -18.816 -9.797 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.219 4.219 3 Si 0.935 3.065 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.537 4.537 8 H 0.098 0.902 9 C 0.091 3.909 10 C -0.244 4.244 11 C -0.091 4.091 12 C -0.264 4.264 13 C -0.060 4.060 14 C -0.288 4.288 15 C 0.351 3.649 16 O -0.460 6.460 17 N -0.382 5.382 18 C 0.009 3.991 19 C -0.096 4.096 20 H 0.098 0.902 21 C 0.005 3.995 22 O -0.369 6.369 23 C -0.107 4.107 24 C -0.077 4.077 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.154 4.154 29 C -0.087 4.087 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.241 0.759 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.235 0.765 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.135 0.865 44 H 0.145 0.855 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.956 -16.347 -9.797 20.652 hybrid contribution -0.757 -1.870 0.110 2.020 sum 7.199 -18.217 -9.686 21.852 Atomic orbital electron populations 1.70474 1.08597 1.33107 1.31952 1.28462 0.95859 1.07381 0.90155 0.82989 0.74495 0.69942 0.79074 1.18029 1.19931 1.19179 1.21109 1.01073 0.93560 1.37920 0.90151 1.17918 0.90407 0.93013 0.89607 1.21212 1.04226 0.97811 1.01200 1.21161 0.97269 0.92633 0.98025 1.20806 1.04551 0.97632 1.03365 1.21124 0.93905 0.95854 0.95113 1.19806 1.08451 0.95820 1.04720 1.18412 0.81775 0.82982 0.81763 1.90665 1.56690 1.35002 1.63594 1.45797 1.43695 1.08370 1.40344 1.21242 0.91506 0.96492 0.89909 1.21236 0.95742 0.93314 0.99285 0.90228 1.22071 0.95790 0.82947 0.98711 1.86721 1.43117 1.22358 1.84699 1.20513 0.97787 0.93360 0.99035 1.19686 0.96398 0.95557 0.96090 1.21167 0.98855 0.95216 0.99974 1.21262 1.00937 0.94996 0.98650 1.21330 0.97295 1.00445 0.96099 1.21296 0.98774 0.94805 1.00506 1.20897 0.96852 0.94860 0.96043 0.90480 0.89270 0.85778 0.84628 0.84953 0.75857 0.92433 0.92339 0.93900 0.92940 0.76493 0.90179 0.90623 0.86467 0.85473 0.85084 0.84901 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.68 12.57 21.88 0.28 -45.41 16 2 C 0.00 -0.18 5.04 85.36 0.43 0.25 16 3 Si 1.12 47.28 29.98 68.60 2.06 49.34 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.51 -29.44 7.65 23.41 0.18 -29.26 16 8 H 0.08 4.94 5.93 -2.91 -0.02 4.92 16 9 C 0.09 5.17 5.17 -21.11 -0.11 5.06 16 10 C -0.23 -11.38 7.87 22.72 0.18 -11.20 16 11 C -0.07 -3.03 10.01 22.26 0.22 -2.81 16 12 C -0.24 -9.20 10.03 22.41 0.22 -8.98 16 13 C -0.04 -1.61 9.53 22.50 0.21 -1.39 16 14 C -0.28 -13.62 5.92 -19.70 -0.12 -13.74 16 15 C 0.56 25.70 7.73 86.67 0.67 26.37 16 16 O -0.58 -31.49 13.56 -4.06 -0.06 -31.55 16 17 N -0.73 -24.10 5.18 -466.37 -2.42 -26.51 16 18 C 0.13 3.69 5.06 86.38 0.44 4.12 16 19 C -0.08 -1.58 2.26 -10.79 -0.02 -1.61 16 20 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 21 C 0.08 1.48 6.23 71.98 0.45 1.93 16 22 O -0.56 -8.98 9.04 -148.98 -1.35 -10.33 16 23 C -0.07 -1.30 4.84 29.85 0.14 -1.16 16 24 C -0.08 -1.50 4.26 -19.87 -0.08 -1.59 16 25 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 26 C -0.14 -2.55 10.05 22.27 0.22 -2.33 16 27 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 28 C -0.14 -2.18 10.05 22.27 0.22 -1.96 16 29 C -0.07 -1.19 6.62 22.27 0.15 -1.04 16 30 H 0.28 16.27 6.55 -92.71 -0.61 15.67 16 31 H 0.09 4.73 6.94 -2.91 -0.02 4.71 16 32 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.13 3.94 6.41 -2.91 -0.02 3.92 16 35 H 0.40 11.11 5.69 -92.71 -0.53 10.58 16 36 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.04 0.80 7.07 -2.39 -0.02 0.78 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.39 3.41 9.12 -74.06 -0.68 2.74 16 41 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 42 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 43 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 46 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 47 H 0.12 1.83 7.80 -2.91 -0.02 1.80 16 Total: -1.00 -71.29 382.33 2.32 -68.97 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.04 Total: 39.28 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 3.85 Total: -43.78 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -2.14 Total: -71.92 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.40 Total: -41.88 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.06 Total: 49.34 kcal Total: -71.29 2.32 -68.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601196823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.082 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds