Wall clock time and date at job start Tue Mar 31 2020 23:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48502 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46990 * 300.00234 * 3 2 1 6 6 H 1.48497 * 109.47168 * 60.00042 * 3 2 1 7 7 C 1.37883 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99581 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46862 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00062 * 169.99873 * 10 9 7 12 12 C 1.53235 * 109.33979 * 187.25043 * 11 10 9 13 13 N 1.47079 * 108.52610 * 306.17164 * 12 11 10 14 14 C 1.34775 * 120.88138 * 231.18787 * 13 12 11 15 15 O 1.21279 * 120.00031 * 6.65751 * 14 13 12 16 16 C 1.50699 * 119.99522 * 186.65876 * 14 13 12 17 17 H 1.08996 * 109.48022 * 11.97648 * 16 14 13 18 18 N 1.46906 * 109.46936 * 131.98035 * 16 14 13 19 19 C 1.50705 * 109.46828 * 251.97529 * 16 14 13 20 20 C 1.38231 * 119.98882 * 260.13384 * 19 16 14 21 21 C 1.38183 * 120.05386 * 179.97438 * 20 19 16 22 22 C 1.38497 * 120.02101 * 359.97438 * 21 20 19 23 23 F 1.35107 * 120.00911 * 179.97438 * 22 21 20 24 24 C 1.38397 * 119.97715 * 359.97438 * 22 21 20 25 25 C 1.38443 * 119.94729 * 359.76838 * 24 22 21 26 26 F 1.35101 * 120.01282 * 180.22295 * 25 24 22 27 27 C 1.47081 * 118.23475 * 51.45921 * 13 12 11 28 28 C 1.46903 * 110.99932 * 294.29974 * 10 9 7 29 29 H 0.97000 * 120.00028 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46908 * 60.00059 * 9 7 2 31 31 H 1.08997 * 109.46770 * 299.99871 * 9 7 2 32 32 H 1.09008 * 109.49019 * 67.29479 * 11 10 9 33 33 H 1.08996 * 109.51265 * 307.23095 * 11 10 9 34 34 H 1.09000 * 109.62853 * 186.46155 * 12 11 10 35 35 H 1.09001 * 109.62865 * 65.88652 * 12 11 10 36 36 H 1.00894 * 110.99651 * 296.03521 * 18 16 14 37 37 H 1.00889 * 111.00128 * 59.99677 * 18 16 14 38 38 H 1.08006 * 119.97063 * 359.97438 * 20 19 16 39 39 H 1.07998 * 119.98971 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.02627 * 179.97438 * 24 22 21 41 41 H 1.08998 * 109.62984 * 68.24764 * 27 13 12 42 42 H 1.08992 * 109.62811 * 188.83692 * 27 13 12 43 43 H 1.08994 * 109.49738 * 292.70782 * 28 10 9 44 44 H 1.09004 * 109.49436 * 52.79059 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5210 -4.8935 0.2387 12 6 2.5636 -6.0032 0.4114 13 7 3.4614 -5.9863 -0.7534 14 6 3.7116 -7.1124 -1.4503 15 8 3.1033 -8.1305 -1.1964 16 6 4.7473 -7.1066 -2.5450 17 1 5.3304 -6.1874 -2.4887 18 7 5.6389 -8.2627 -2.3817 19 6 4.0623 -7.1857 -3.8850 20 6 3.9829 -8.3950 -4.5500 21 6 3.3547 -8.4692 -5.7785 22 6 2.8033 -7.3318 -6.3447 23 9 2.1896 -7.4046 -7.5461 24 6 2.8813 -6.1208 -5.6794 25 6 3.5063 -6.0487 -4.4461 26 9 3.5793 -4.8681 -3.7934 27 6 4.0836 -4.7091 -1.1339 28 6 2.9766 -3.6492 -1.2494 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 0.8794 -5.1264 -0.6112 33 1 0.9155 -4.8194 1.1420 34 1 2.0630 -6.9694 0.4738 35 1 3.1392 -5.8266 1.3200 36 1 6.1584 -8.1997 -1.5191 37 1 5.1218 -9.1277 -2.4302 38 1 4.4122 -9.2825 -4.1089 39 1 3.2928 -9.4146 -6.2969 40 1 2.4521 -5.2333 -6.1203 41 1 4.8025 -4.4104 -0.3710 42 1 4.5884 -4.8193 -2.0936 43 1 2.3147 -3.8993 -2.0785 44 1 3.4271 -2.6723 -1.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602603653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:47 Heat of formation + Delta-G solvation = -73.386793 kcal Electronic energy + Delta-G solvation = -30440.837187 eV Core-core repulsion = 26029.657596 eV Total energy + Delta-G solvation = -4411.179591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.29815 -49.25964 -40.57486 -39.06989 -37.61598 -35.03492 -34.48871 -32.45328 -31.13455 -30.89989 -30.49310 -28.40755 -26.51280 -25.24773 -23.36997 -23.35722 -22.63499 -21.71481 -20.57759 -18.82964 -18.62007 -17.90509 -17.22972 -16.82383 -16.41691 -16.30061 -16.05846 -15.92883 -15.49417 -15.23342 -14.97678 -14.77531 -14.73810 -14.43227 -14.19328 -13.83400 -13.81021 -13.62771 -13.44297 -12.94676 -12.75589 -12.23938 -12.13126 -12.00362 -11.73015 -11.67906 -11.31433 -11.10288 -11.00131 -10.80006 -10.70230 -10.55905 -10.39322 -9.90905 -9.38395 -9.29566 -9.27814 -8.75525 -8.57850 -8.48096 -7.35805 -6.08317 -4.10359 0.58003 0.72777 2.40574 2.88506 3.14702 3.27303 3.35076 3.38911 3.57009 3.90608 4.08440 4.27780 4.32204 4.36905 4.43483 4.54513 4.67771 4.82172 5.02407 5.23081 5.27620 5.35603 5.43119 5.48966 5.51377 5.58452 5.62584 5.69392 5.73084 5.81558 5.84544 5.94852 6.23343 6.39779 6.42106 6.48314 6.51932 6.58753 6.90115 7.18814 7.25622 7.39841 7.71882 7.98484 8.02129 8.09228 8.44616 8.96971 9.54323 11.02561 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.003370 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.411547 B = 8307.188607 C = 9500.887083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.042 3.958 12 C 0.115 3.885 13 N -0.597 5.597 14 C 0.483 3.517 15 O -0.548 6.548 16 C 0.115 3.885 17 H 0.118 0.882 18 N -0.815 5.815 19 C -0.119 4.119 20 C -0.034 4.034 21 C -0.165 4.165 22 C 0.131 3.869 23 F -0.131 7.131 24 C -0.190 4.190 25 C 0.139 3.861 26 F -0.116 7.116 27 C 0.097 3.903 28 C 0.054 3.946 29 H 0.261 0.739 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.352 0.648 37 H 0.351 0.649 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.030 0.970 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.218 -17.143 -9.208 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.088 4.088 12 C -0.007 4.007 13 N -0.329 5.329 14 C 0.268 3.732 15 O -0.425 6.425 16 C 0.000 4.000 17 H 0.135 0.865 18 N -0.346 5.346 19 C -0.121 4.121 20 C -0.052 4.052 21 C -0.184 4.184 22 C 0.111 3.889 23 F -0.110 7.110 24 C -0.209 4.209 25 C 0.119 3.881 26 F -0.094 7.094 27 C -0.026 4.026 28 C -0.075 4.075 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.170 0.830 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.048 0.952 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.402 -17.176 -9.353 22.151 hybrid contribution -1.024 1.059 0.125 1.478 sum 9.378 -16.117 -9.228 20.805 Atomic orbital electron populations 1.69966 1.06108 1.26762 1.50830 1.24995 0.94852 0.99367 0.95345 0.86447 0.80066 0.83398 0.77546 1.19597 1.21104 1.20997 1.21165 0.93487 0.89816 1.50276 0.91736 1.19727 0.89999 0.87173 0.96214 1.62091 1.28037 1.02618 1.33338 1.22379 0.94880 0.90593 1.00927 1.21811 0.91900 0.99633 0.87387 1.48342 1.46053 1.08556 1.29981 1.21596 0.84385 0.83633 0.83599 1.90671 1.50439 1.32570 1.68866 1.20349 0.92079 0.97939 0.89647 0.86470 1.59190 1.28045 1.04006 1.43378 1.19439 1.02599 0.93226 0.96816 1.20643 0.94784 0.97023 0.92766 1.21193 1.01573 0.98260 0.97353 1.17336 0.95621 0.93892 0.82013 1.91540 1.80362 1.96986 1.42093 1.21036 1.05117 0.99149 0.95629 1.17151 0.98631 0.81378 0.90955 1.91569 1.93859 1.44333 1.79653 1.22433 0.96673 0.82531 1.00921 1.22377 0.94970 0.98765 0.91393 0.92915 0.99116 0.95040 0.95617 0.90038 0.89511 0.90741 0.83483 0.83365 0.83499 0.83787 0.82997 0.90557 0.89262 0.95200 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.79 8.41 -34.44 -0.29 -14.08 16 8 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 9 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 10 N -0.54 -11.05 4.62 -235.46 -1.09 -12.14 16 11 C 0.04 0.75 5.62 -3.70 -0.02 0.72 16 12 C 0.12 1.76 6.61 -3.60 -0.02 1.74 16 13 N -0.60 -8.71 3.00 -172.18 -0.52 -9.22 16 14 C 0.48 6.73 6.68 -10.99 -0.07 6.65 16 15 O -0.55 -8.98 16.15 5.56 0.09 -8.89 16 16 C 0.11 1.25 2.78 -70.01 -0.19 1.05 16 17 H 0.12 1.20 5.56 -51.93 -0.29 0.91 16 18 N -0.81 -6.98 8.68 -6.65 -0.06 -7.04 16 19 C -0.12 -1.33 5.08 -104.55 -0.53 -1.86 16 20 C -0.03 -0.32 9.25 -39.60 -0.37 -0.68 16 21 C -0.16 -1.47 10.03 -39.51 -0.40 -1.86 16 22 C 0.13 1.36 7.30 -39.43 -0.29 1.07 16 23 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 24 C -0.19 -2.10 10.01 -39.45 -0.39 -2.49 16 25 C 0.14 1.67 7.23 -39.43 -0.29 1.39 16 26 F -0.12 -1.54 12.16 2.25 0.03 -1.51 16 27 C 0.10 1.38 5.70 -3.36 -0.02 1.36 16 28 C 0.05 0.99 5.00 -3.46 -0.02 0.97 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 32 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 34 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.35 2.60 9.06 -39.30 -0.36 2.25 16 37 H 0.35 2.91 6.96 -39.30 -0.27 2.63 16 38 H 0.15 1.10 6.24 -52.48 -0.33 0.77 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.09 3.30 -51.93 -0.17 0.92 16 43 H 0.03 0.58 7.11 -51.93 -0.37 0.21 16 44 H 0.10 1.90 6.67 -51.93 -0.35 1.55 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -31.30 357.90 -8.79 -40.09 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.37 Total: 3.80 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -3.02 Total: 0.31 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.93 Total: -53.91 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.07 Total: -2.88 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.30 -8.79 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.299 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds