Wall clock time and date at job start Tue Mar 31 2020 23:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48502 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46990 * 300.00234 * 3 2 1 6 6 H 1.48497 * 109.47168 * 60.00042 * 3 2 1 7 7 C 1.37883 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99581 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46862 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00062 * 169.99873 * 10 9 7 12 12 C 1.53235 * 109.33979 * 187.25043 * 11 10 9 13 13 N 1.47079 * 108.52610 * 306.17164 * 12 11 10 14 14 C 1.34775 * 120.88138 * 231.18787 * 13 12 11 15 15 O 1.21279 * 120.00031 * 6.65751 * 14 13 12 16 16 C 1.50699 * 119.99522 * 186.65876 * 14 13 12 17 17 H 1.08996 * 109.48022 * 11.97648 * 16 14 13 18 18 N 1.46906 * 109.46936 * 131.98035 * 16 14 13 19 19 C 1.50705 * 109.46828 * 251.97529 * 16 14 13 20 20 C 1.38231 * 119.98882 * 260.13384 * 19 16 14 21 21 C 1.38183 * 120.05386 * 179.97438 * 20 19 16 22 22 C 1.38497 * 120.02101 * 359.97438 * 21 20 19 23 23 F 1.35107 * 120.00911 * 179.97438 * 22 21 20 24 24 C 1.38397 * 119.97715 * 359.97438 * 22 21 20 25 25 C 1.38443 * 119.94729 * 359.76838 * 24 22 21 26 26 F 1.35101 * 120.01282 * 180.22295 * 25 24 22 27 27 C 1.47081 * 118.23475 * 51.45921 * 13 12 11 28 28 C 1.46903 * 110.99932 * 294.29974 * 10 9 7 29 29 H 0.97000 * 120.00028 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46908 * 60.00059 * 9 7 2 31 31 H 1.08997 * 109.46770 * 299.99871 * 9 7 2 32 32 H 1.09008 * 109.49019 * 67.29479 * 11 10 9 33 33 H 1.08996 * 109.51265 * 307.23095 * 11 10 9 34 34 H 1.09000 * 109.62853 * 186.46155 * 12 11 10 35 35 H 1.09001 * 109.62865 * 65.88652 * 12 11 10 36 36 H 1.00894 * 110.99651 * 296.03521 * 18 16 14 37 37 H 1.00889 * 111.00128 * 59.99677 * 18 16 14 38 38 H 1.08006 * 119.97063 * 359.97438 * 20 19 16 39 39 H 1.07998 * 119.98971 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.02627 * 179.97438 * 24 22 21 41 41 H 1.08998 * 109.62984 * 68.24764 * 27 13 12 42 42 H 1.08992 * 109.62811 * 188.83692 * 27 13 12 43 43 H 1.08994 * 109.49738 * 292.70782 * 28 10 9 44 44 H 1.09004 * 109.49436 * 52.79059 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5210 -4.8935 0.2387 12 6 2.5636 -6.0032 0.4114 13 7 3.4614 -5.9863 -0.7534 14 6 3.7116 -7.1124 -1.4503 15 8 3.1033 -8.1305 -1.1964 16 6 4.7473 -7.1066 -2.5450 17 1 5.3304 -6.1874 -2.4887 18 7 5.6389 -8.2627 -2.3817 19 6 4.0623 -7.1857 -3.8850 20 6 3.9829 -8.3950 -4.5500 21 6 3.3547 -8.4692 -5.7785 22 6 2.8033 -7.3318 -6.3447 23 9 2.1896 -7.4046 -7.5461 24 6 2.8813 -6.1208 -5.6794 25 6 3.5063 -6.0487 -4.4461 26 9 3.5793 -4.8681 -3.7934 27 6 4.0836 -4.7091 -1.1339 28 6 2.9766 -3.6492 -1.2494 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 0.8794 -5.1264 -0.6112 33 1 0.9155 -4.8194 1.1420 34 1 2.0630 -6.9694 0.4738 35 1 3.1392 -5.8266 1.3200 36 1 6.1584 -8.1997 -1.5191 37 1 5.1218 -9.1277 -2.4302 38 1 4.4122 -9.2825 -4.1089 39 1 3.2928 -9.4146 -6.2969 40 1 2.4521 -5.2333 -6.1203 41 1 4.8025 -4.4104 -0.3710 42 1 4.5884 -4.8193 -2.0936 43 1 2.3147 -3.8993 -2.0785 44 1 3.4271 -2.6723 -1.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602603653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:46 Heat of formation + Delta-G solvation = -95.419646 kcal Electronic energy + Delta-G solvation = -30441.792603 eV Core-core repulsion = 26029.657596 eV Total energy + Delta-G solvation = -4412.135008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.24163 -50.08107 -41.65749 -40.03465 -38.97686 -36.06764 -35.88227 -34.41371 -32.26224 -31.91697 -31.27423 -30.09438 -27.84642 -26.62152 -24.73164 -24.18975 -24.06092 -23.04221 -21.91290 -20.02423 -19.49874 -18.87270 -18.51336 -18.20621 -17.66171 -17.32654 -16.94710 -16.89355 -16.69927 -16.41820 -16.24438 -15.98402 -15.91443 -15.70490 -15.39436 -15.20740 -15.17700 -14.81220 -14.29486 -14.24675 -14.04162 -13.76629 -13.34688 -13.10273 -13.05545 -12.78478 -12.64588 -12.60949 -12.49473 -12.38382 -12.26685 -12.15520 -11.82462 -11.47452 -11.28991 -10.63807 -10.17513 -10.08688 -9.86030 -9.61532 -9.10775 -8.21519 -6.31893 -0.24333 -0.06734 1.32033 1.42322 1.42998 1.56390 1.82105 2.27837 2.40197 2.74524 3.10501 3.12692 3.18316 3.26179 3.30702 3.50864 3.62689 3.80352 3.91893 3.92765 3.99501 4.18392 4.18634 4.29896 4.38234 4.48728 4.64717 4.68510 4.73130 4.78529 4.82250 4.91047 4.97074 4.98436 5.08072 5.15789 5.19061 5.34659 5.62626 5.64590 5.80000 6.00080 6.15705 6.26661 6.32507 6.52369 6.83943 6.90120 7.38244 8.90193 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013060 B = 0.003370 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.411547 B = 8307.188607 C = 9500.887083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.043 3.957 12 C 0.125 3.875 13 N -0.602 5.602 14 C 0.484 3.516 15 O -0.571 6.571 16 C 0.124 3.876 17 H 0.125 0.875 18 N -0.803 5.803 19 C -0.129 4.129 20 C -0.032 4.032 21 C -0.153 4.153 22 C 0.122 3.878 23 F -0.135 7.135 24 C -0.200 4.200 25 C 0.117 3.883 26 F -0.129 7.129 27 C 0.110 3.890 28 C 0.056 3.944 29 H 0.264 0.736 30 H -0.044 1.044 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.361 0.639 37 H 0.355 0.645 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.153 0.847 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.014 0.986 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.675 -18.368 -9.591 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.086 4.086 12 C 0.002 3.998 13 N -0.335 5.335 14 C 0.270 3.730 15 O -0.450 6.450 16 C 0.009 3.991 17 H 0.143 0.857 18 N -0.336 5.336 19 C -0.131 4.131 20 C -0.050 4.050 21 C -0.171 4.171 22 C 0.103 3.897 23 F -0.113 7.113 24 C -0.219 4.219 25 C 0.098 3.902 26 F -0.108 7.108 27 C -0.012 4.012 28 C -0.073 4.073 29 H 0.073 0.927 30 H -0.027 1.027 31 H 0.024 0.976 32 H 0.027 0.973 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.188 0.812 39 H 0.191 0.809 40 H 0.171 0.829 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.032 0.968 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.892 -18.431 -9.741 24.511 hybrid contribution -1.848 1.341 0.192 2.291 sum 11.044 -17.090 -9.549 22.477 Atomic orbital electron populations 1.70104 1.07916 1.27855 1.51862 1.25941 0.95681 1.03333 0.94763 0.85316 0.79256 0.78425 0.77528 1.18108 1.20716 1.20607 1.21476 0.93838 0.90603 1.49892 0.91168 1.19378 0.90090 0.89021 0.93287 1.62035 1.26890 1.02466 1.34646 1.22429 0.95697 0.90278 1.00224 1.21671 0.91467 0.98252 0.88440 1.48408 1.46067 1.09016 1.29966 1.22222 0.84388 0.82797 0.83590 1.90657 1.51514 1.33344 1.69531 1.20295 0.91272 0.99276 0.88281 0.85717 1.59201 1.27076 1.03381 1.43910 1.19593 1.02853 0.93561 0.97068 1.20956 0.94277 0.97067 0.92724 1.21524 0.99810 0.98827 0.96978 1.17493 0.95990 0.94217 0.82001 1.91532 1.80503 1.96998 1.42293 1.21143 1.05265 0.99835 0.95675 1.17362 0.99950 0.81388 0.91548 1.91521 1.94121 1.45156 1.79970 1.22343 0.95026 0.81027 1.02779 1.22373 0.95496 0.99746 0.89707 0.92750 1.02650 0.97627 0.97344 0.89923 0.89145 0.89293 0.82448 0.82903 0.81243 0.80852 0.82880 0.89062 0.86967 0.96807 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.24 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.52 -28.72 8.41 25.60 0.22 -28.50 16 8 H 0.07 3.72 7.13 -2.91 -0.02 3.70 16 9 C 0.21 11.06 4.72 85.56 0.40 11.47 16 10 N -0.54 -22.62 4.62 -898.86 -4.15 -26.78 16 11 C 0.04 1.57 5.62 86.38 0.49 2.06 16 12 C 0.12 3.69 6.61 86.35 0.57 4.26 16 13 N -0.60 -16.77 3.00 -817.06 -2.45 -19.23 16 14 C 0.48 12.62 6.68 87.66 0.59 13.20 16 15 O -0.57 -17.75 16.15 -3.03 -0.05 -17.80 16 16 C 0.12 2.41 2.78 43.42 0.12 2.53 16 17 H 0.13 2.23 5.56 -2.39 -0.01 2.22 16 18 N -0.80 -11.34 8.68 -174.94 -1.52 -12.86 16 19 C -0.13 -2.65 5.08 -19.81 -0.10 -2.75 16 20 C -0.03 -0.52 9.25 22.26 0.21 -0.31 16 21 C -0.15 -2.32 10.03 22.32 0.22 -2.10 16 22 C 0.12 2.38 7.30 22.37 0.16 2.55 16 23 F -0.13 -2.74 17.27 44.97 0.78 -1.96 16 24 C -0.20 -4.36 10.01 22.36 0.22 -4.14 16 25 C 0.12 2.76 7.23 22.37 0.16 2.92 16 26 F -0.13 -3.43 12.16 44.97 0.55 -2.88 16 27 C 0.11 2.99 5.70 86.51 0.49 3.49 16 28 C 0.06 2.06 5.00 86.54 0.43 2.49 16 29 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 30 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 31 H 0.01 0.32 7.97 -2.39 -0.02 0.30 16 32 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.08 2.96 7.99 -2.39 -0.02 2.94 16 34 H 0.09 2.66 7.04 -2.39 -0.02 2.64 16 35 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.36 4.20 9.06 -89.70 -0.81 3.39 16 37 H 0.36 4.75 6.96 -89.70 -0.62 4.13 16 38 H 0.17 1.91 6.24 -2.91 -0.02 1.90 16 39 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.11 2.56 3.30 -2.39 -0.01 2.56 16 43 H 0.01 0.55 7.11 -2.39 -0.02 0.54 16 44 H 0.08 3.31 6.67 -2.39 -0.02 3.29 16 Total: -1.00 -68.80 357.90 -0.25 -69.05 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.36 Total: 15.33 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 4.65 Total: 7.68 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -7.84 Total: -114.81 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.80 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 1.32 Total: -4.85 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.80 -0.25 -69.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602603653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.372 kcal (2) G-P(sol) polarization free energy of solvation -68.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds