Wall clock time and date at job start Tue Mar 31 2020 22:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46959 * 2 1 4 4 C 1.46501 * 119.99628 * 269.99909 * 3 2 1 5 5 C 1.50705 * 109.47069 * 269.99800 * 4 3 2 6 6 H 1.07999 * 120.00017 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99903 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99805 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00064 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47240 * 89.99828 * 9 7 5 11 11 H 1.48493 * 109.46968 * 210.00294 * 9 7 5 12 12 H 1.48510 * 109.46797 * 329.99716 * 9 7 5 13 13 C 1.34775 * 120.00052 * 90.00060 * 3 2 1 14 14 O 1.21277 * 119.99766 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99741 * 359.97438 * 13 3 2 16 16 N 1.46500 * 109.46926 * 179.97438 * 15 13 3 17 17 C 1.35147 * 125.73568 * 125.00066 * 16 15 13 18 18 C 1.36597 * 106.03858 * 179.97438 * 17 16 15 19 19 C 1.48288 * 126.92124 * 180.02562 * 18 17 16 20 20 C 1.39514 * 119.97058 * 179.97438 * 19 18 17 21 21 C 1.37627 * 120.03286 * 180.02562 * 20 19 18 22 22 C 1.39785 * 119.96540 * 0.23362 * 21 20 19 23 23 C 1.43201 * 120.02691 * 179.74994 * 22 21 20 24 24 N 8.92771 * 135.97251 * 183.94627 * 16 1 2 25 25 C 1.39786 * 119.93924 * 359.51128 * 22 21 20 26 26 C 1.37627 * 119.96263 * 0.51139 * 25 22 21 27 27 N 1.34562 * 106.16128 * 0.25797 * 18 17 16 28 28 N 1.28611 * 108.76056 * 359.56888 * 27 18 17 29 29 H 1.08993 * 109.47268 * 300.00060 * 1 2 3 30 30 H 1.08998 * 109.47231 * 60.00242 * 1 2 3 31 31 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47515 * 240.00062 * 2 1 3 33 33 H 1.08998 * 109.47231 * 119.99758 * 2 1 3 34 34 H 1.08994 * 109.47383 * 30.00070 * 4 3 2 35 35 H 1.09005 * 109.46807 * 150.00093 * 4 3 2 36 36 H 0.97005 * 119.99665 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.47189 * 60.00602 * 15 13 3 38 38 H 1.08996 * 109.47496 * 299.99801 * 15 13 3 39 39 H 1.08001 * 126.97927 * 359.92489 * 17 16 15 40 40 H 1.07999 * 119.98197 * 359.97438 * 20 19 18 41 41 H 1.08002 * 120.01237 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.01819 * 180.23458 * 25 22 21 43 43 H 1.07999 * 119.98271 * 179.74616 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9134 2.0964 -3.4171 10 1 5.9761 0.8760 -4.2606 11 1 6.3929 3.2640 -4.1993 12 1 6.7736 1.9157 -2.2200 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9912 1.3064 2.4722 16 7 2.3092 2.2037 3.5857 17 6 1.4738 2.5365 4.5946 18 6 2.1757 3.3870 5.4008 19 6 1.6960 4.0328 6.6465 20 6 2.5413 4.8816 7.3616 21 6 2.0975 5.4813 8.5182 22 6 0.8009 5.2356 8.9789 23 6 0.3396 5.8546 10.1850 24 7 -0.0299 6.3456 11.1407 25 6 -0.0468 4.3891 8.2585 26 6 0.3999 3.7905 7.1025 27 7 3.3884 3.5249 4.8342 28 7 3.4308 2.8069 3.7680 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 3.6757 3.5177 -4.4431 37 1 2.6212 0.4187 2.5302 38 1 0.9432 1.0126 2.5298 39 1 0.4574 2.1993 4.7345 40 1 3.5446 5.0676 7.0079 41 1 2.7523 6.1380 9.0717 42 1 -1.0501 4.2014 8.6113 43 1 -0.2534 3.1332 6.5479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603209097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:03 Heat of formation + Delta-G solvation = 125.589787 kcal Electronic energy + Delta-G solvation = -27292.226320 eV Core-core repulsion = 23340.364187 eV Total energy + Delta-G solvation = -3951.862133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.28495 -39.72570 -39.31820 -36.79058 -35.65913 -34.64949 -32.98431 -32.79450 -31.53978 -30.35239 -29.96374 -29.10492 -26.80637 -24.85287 -23.70232 -23.24834 -22.92995 -21.73364 -21.35539 -19.29594 -18.91393 -17.71303 -17.22004 -16.51535 -16.39730 -15.76201 -15.69956 -15.38803 -14.92850 -14.83550 -14.59401 -14.36619 -14.16841 -13.91374 -13.69116 -13.61992 -13.45733 -13.09320 -12.91674 -12.78154 -12.34173 -12.25424 -12.12910 -11.84987 -11.56143 -11.50782 -11.33520 -11.05011 -10.94110 -10.90462 -10.65178 -10.59186 -10.22732 -9.96670 -9.75560 -9.44098 -9.20470 -8.53384 -8.51376 -7.92593 -6.12959 -4.18141 0.16956 0.97935 1.56217 2.13575 2.27506 2.33081 2.93148 2.96613 3.25957 3.33906 3.38328 3.52576 3.56932 3.61613 3.93184 4.30778 4.37696 4.44814 4.50664 4.57716 4.59434 4.77173 4.81689 4.91276 5.09044 5.17016 5.22400 5.29671 5.35969 5.48599 5.50700 5.58844 5.65989 5.77681 5.89982 6.01800 6.06154 6.18124 6.24341 6.37768 6.39792 6.83964 7.14176 7.25228 7.33378 7.82165 8.08737 8.11756 8.48805 8.65057 8.86968 9.47509 10.95241 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.002079 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.126334 B =13463.327295 C =14304.790564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.589 5.589 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.509 6.509 15 C 0.090 3.910 16 N -0.270 5.270 17 C -0.031 4.031 18 C -0.004 4.004 19 C 0.041 3.959 20 C -0.096 4.096 21 C -0.065 4.065 22 C -0.037 4.037 23 C 0.258 3.742 24 N -0.423 5.423 25 C -0.065 4.065 26 C -0.111 4.111 27 N -0.258 5.258 28 N -0.035 5.035 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.193 0.807 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 -6.717 18.876 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.322 5.322 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.276 3.724 14 O -0.383 6.383 15 C -0.035 4.035 16 N -0.061 5.061 17 C -0.182 4.182 18 C -0.140 4.140 19 C 0.038 3.962 20 C -0.115 4.115 21 C -0.086 4.086 22 C -0.041 4.041 23 C -0.057 4.057 24 N -0.098 5.098 25 C -0.086 4.086 26 C -0.130 4.130 27 N -0.125 5.125 28 N -0.015 5.015 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.210 0.790 40 H 0.162 0.838 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.742 -5.018 19.536 21.983 hybrid contribution -0.105 -0.727 -0.655 0.984 sum -8.847 -5.745 18.881 21.628 Atomic orbital electron populations 1.22245 0.96427 1.01789 1.02459 1.21539 0.93719 0.83931 1.03220 1.48255 1.63368 1.13316 1.07259 1.19350 0.96634 0.93626 0.77407 1.21391 0.96747 1.32306 1.06437 0.92319 1.24928 0.97974 0.94741 0.96360 1.69923 1.35803 1.33149 1.14336 0.86479 0.84518 0.77707 0.78667 1.20613 1.21034 1.19755 1.19850 0.80469 0.87498 0.84595 1.90817 1.44000 1.17287 1.86198 1.22225 1.04810 0.92188 0.84326 1.46802 1.09879 1.31576 1.17876 1.23509 0.99544 1.03902 0.91291 1.20270 0.92897 1.02445 0.98343 1.17922 0.93220 0.94563 0.90499 1.21210 1.00786 0.95620 0.93866 1.21127 0.93638 0.98104 0.95693 1.16085 0.95482 1.01363 0.91143 1.25754 0.93585 0.93443 0.92956 1.81274 1.08027 1.09246 1.11297 1.21009 0.99164 0.94542 0.93888 1.20995 0.94822 1.00745 0.96483 1.75363 1.18122 1.16314 1.02690 1.78498 1.05433 1.05735 1.11846 0.93274 0.91655 0.91751 0.89188 0.91771 0.94610 0.93784 0.92613 0.85575 0.85233 0.78972 0.83773 0.84626 0.84656 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.10 1.25 5.93 -4.04 -0.02 1.23 16 3 N -0.59 -10.77 2.46 -175.05 -0.43 -11.20 16 4 C 0.25 6.01 5.16 -5.19 -0.03 5.99 16 5 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.49 8.99 7.68 -10.99 -0.08 8.90 16 14 O -0.51 -12.19 15.25 5.56 0.08 -12.11 16 15 C 0.09 1.04 5.48 -5.20 -0.03 1.01 16 16 N -0.27 -3.70 3.19 -62.16 -0.20 -3.90 16 17 C -0.03 -0.32 10.95 -16.68 -0.18 -0.50 16 18 C 0.00 -0.04 6.98 -83.13 -0.58 -0.62 16 19 C 0.04 0.38 5.88 -104.81 -0.62 -0.24 16 20 C -0.10 -0.84 9.69 -39.33 -0.38 -1.22 16 21 C -0.07 -0.47 9.74 -39.23 -0.38 -0.85 16 22 C -0.04 -0.27 5.74 -106.81 -0.61 -0.88 16 23 C 0.26 2.31 15.32 -22.47 -0.34 1.97 16 24 N -0.42 -4.82 18.54 41.84 0.78 -4.05 16 25 C -0.07 -0.39 9.74 -39.23 -0.38 -0.77 16 26 C -0.11 -0.71 9.56 -39.33 -0.38 -1.08 16 27 N -0.26 -4.17 12.15 33.05 0.40 -3.76 16 28 N -0.04 -0.62 12.09 60.35 0.73 0.11 16 29 H 0.05 0.41 7.22 -51.93 -0.37 0.04 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 34 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.13 1.17 7.40 -51.93 -0.38 0.78 16 38 H 0.13 0.89 7.11 -51.93 -0.37 0.52 16 39 H 0.19 0.97 7.39 -52.49 -0.39 0.59 16 40 H 0.14 1.32 7.89 -52.49 -0.41 0.91 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 43 H 0.14 0.51 7.10 -52.49 -0.37 0.14 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -37.24 383.40 -6.30 -43.54 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -5.10 Total: -4.36 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.06 Total: -1.41 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 2.02 Total: -47.86 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.24 -6.30 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603209097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.134 kcal (2) G-P(sol) polarization free energy of solvation -37.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds