Wall clock time and date at job start Tue Mar 31 2020 22:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46959 * 2 1 4 4 C 1.46501 * 119.99628 * 269.99909 * 3 2 1 5 5 C 1.50705 * 109.47069 * 269.99800 * 4 3 2 6 6 H 1.07999 * 120.00017 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99903 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99805 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00064 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47240 * 89.99828 * 9 7 5 11 11 H 1.48493 * 109.46968 * 210.00294 * 9 7 5 12 12 H 1.48510 * 109.46797 * 329.99716 * 9 7 5 13 13 C 1.34775 * 120.00052 * 90.00060 * 3 2 1 14 14 O 1.21277 * 119.99766 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99741 * 359.97438 * 13 3 2 16 16 N 1.46500 * 109.46926 * 179.97438 * 15 13 3 17 17 C 1.35147 * 125.73568 * 125.00066 * 16 15 13 18 18 C 1.36597 * 106.03858 * 179.97438 * 17 16 15 19 19 C 1.48288 * 126.92124 * 180.02562 * 18 17 16 20 20 C 1.39514 * 119.97058 * 179.97438 * 19 18 17 21 21 C 1.37627 * 120.03286 * 180.02562 * 20 19 18 22 22 C 1.39785 * 119.96540 * 0.23362 * 21 20 19 23 23 C 1.43201 * 120.02691 * 179.74994 * 22 21 20 24 24 N 8.92771 * 135.97251 * 183.94627 * 16 1 2 25 25 C 1.39786 * 119.93924 * 359.51128 * 22 21 20 26 26 C 1.37627 * 119.96263 * 0.51139 * 25 22 21 27 27 N 1.34562 * 106.16128 * 0.25797 * 18 17 16 28 28 N 1.28611 * 108.76056 * 359.56888 * 27 18 17 29 29 H 1.08993 * 109.47268 * 300.00060 * 1 2 3 30 30 H 1.08998 * 109.47231 * 60.00242 * 1 2 3 31 31 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47515 * 240.00062 * 2 1 3 33 33 H 1.08998 * 109.47231 * 119.99758 * 2 1 3 34 34 H 1.08994 * 109.47383 * 30.00070 * 4 3 2 35 35 H 1.09005 * 109.46807 * 150.00093 * 4 3 2 36 36 H 0.97005 * 119.99665 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.47189 * 60.00602 * 15 13 3 38 38 H 1.08996 * 109.47496 * 299.99801 * 15 13 3 39 39 H 1.08001 * 126.97927 * 359.92489 * 17 16 15 40 40 H 1.07999 * 119.98197 * 359.97438 * 20 19 18 41 41 H 1.08002 * 120.01237 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.01819 * 180.23458 * 25 22 21 43 43 H 1.07999 * 119.98271 * 179.74616 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8775 8 7 3.3496 3.1273 -3.6171 9 14 5.9134 2.0964 -3.4171 10 1 5.9761 0.8760 -4.2606 11 1 6.3929 3.2640 -4.1993 12 1 6.7736 1.9157 -2.2200 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9912 1.3064 2.4722 16 7 2.3092 2.2037 3.5857 17 6 1.4738 2.5365 4.5946 18 6 2.1757 3.3870 5.4008 19 6 1.6960 4.0328 6.6465 20 6 2.5413 4.8816 7.3616 21 6 2.0975 5.4813 8.5182 22 6 0.8009 5.2356 8.9789 23 6 0.3396 5.8546 10.1850 24 7 -0.0299 6.3456 11.1407 25 6 -0.0468 4.3891 8.2585 26 6 0.3999 3.7905 7.1025 27 7 3.3884 3.5249 4.8342 28 7 3.4308 2.8069 3.7680 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1385 36 1 3.6757 3.5177 -4.4431 37 1 2.6212 0.4187 2.5302 38 1 0.9432 1.0126 2.5298 39 1 0.4574 2.1993 4.7345 40 1 3.5446 5.0676 7.0079 41 1 2.7523 6.1380 9.0717 42 1 -1.0501 4.2014 8.6113 43 1 -0.2534 3.1332 6.5479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603209097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:03 Heat of formation + Delta-G solvation = 100.277580 kcal Electronic energy + Delta-G solvation = -27293.323940 eV Core-core repulsion = 23340.364187 eV Total energy + Delta-G solvation = -3952.959753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.22657 -40.78818 -40.24371 -37.55021 -37.07860 -35.69485 -34.87080 -33.65350 -32.09007 -31.64277 -30.79150 -30.24818 -28.44208 -25.57716 -25.16937 -24.33216 -23.89027 -22.53912 -22.35846 -20.16057 -19.89169 -18.75177 -18.62431 -18.25972 -17.36388 -16.84994 -16.70815 -16.37783 -16.24549 -15.97905 -15.48197 -15.26419 -15.06736 -14.76941 -14.64452 -14.43423 -14.40642 -14.27815 -13.84027 -13.71938 -13.58532 -13.38073 -13.23926 -13.07766 -12.99374 -12.68187 -12.51439 -12.36836 -12.22310 -12.15344 -11.85635 -11.75323 -11.73329 -11.56272 -10.87312 -10.65379 -10.58095 -9.95445 -9.50377 -9.26580 -8.24701 -6.38350 -0.45209 0.46409 0.65823 1.29234 1.34476 1.38361 1.44361 1.47740 1.63048 1.65545 2.18418 2.24913 2.39761 2.86935 3.00917 3.05813 3.16821 3.42249 3.65417 3.77367 3.95966 4.00139 4.04804 4.16287 4.22883 4.37518 4.45706 4.52116 4.68118 4.74000 4.78764 4.89861 4.95229 5.03617 5.10309 5.12220 5.21273 5.34380 5.38198 5.46567 5.52723 5.56406 5.60581 5.81296 5.84117 6.04015 6.45911 6.64120 6.73298 7.24121 7.38234 7.51722 8.82172 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.002079 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.126334 B =13463.327295 C =14304.790564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.594 5.594 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.963 3.037 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.276 1.276 13 C 0.483 3.517 14 O -0.581 6.581 15 C 0.102 3.898 16 N -0.276 5.276 17 C -0.006 4.006 18 C -0.017 4.017 19 C 0.023 3.977 20 C -0.113 4.113 21 C -0.062 4.062 22 C -0.041 4.041 23 C 0.282 3.718 24 N -0.469 5.469 25 C -0.053 4.053 26 C -0.097 4.097 27 N -0.295 5.295 28 N -0.105 5.105 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.028 0.972 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.156 0.844 38 H 0.192 0.808 39 H 0.255 0.745 40 H 0.127 0.873 41 H 0.146 0.854 42 H 0.165 0.835 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.222 -9.747 20.581 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.325 5.325 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.201 1.201 13 C 0.269 3.731 14 O -0.460 6.460 15 C -0.022 4.022 16 N -0.068 5.068 17 C -0.158 4.158 18 C -0.154 4.154 19 C 0.021 3.979 20 C -0.132 4.132 21 C -0.082 4.082 22 C -0.045 4.045 23 C -0.032 4.032 24 N -0.145 5.145 25 C -0.074 4.074 26 C -0.116 4.116 27 N -0.161 5.161 28 N -0.083 5.083 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.046 0.954 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.174 0.826 38 H 0.209 0.791 39 H 0.271 0.729 40 H 0.145 0.855 41 H 0.164 0.836 42 H 0.183 0.817 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.143 -8.112 21.246 25.325 hybrid contribution 0.567 0.225 -1.136 1.290 sum -10.576 -7.887 20.110 24.051 Atomic orbital electron populations 1.22198 0.93892 1.03902 1.02179 1.21951 0.95776 0.80570 1.04780 1.48217 1.63380 1.15366 1.05551 1.18694 0.95182 0.91464 0.80343 1.21723 0.98072 1.31885 1.06369 0.92808 1.25810 1.02089 0.94568 0.96652 1.70038 1.37664 1.34168 1.14813 0.85484 0.79374 0.78230 0.78163 1.18494 1.20965 1.20092 1.20992 0.78626 0.86922 0.86569 1.90788 1.46984 1.20712 1.87532 1.22432 1.09013 0.91141 0.79593 1.47005 1.09621 1.31455 1.18715 1.24447 1.00848 1.01540 0.88938 1.20858 0.92060 1.03050 0.99478 1.18071 0.94704 0.95227 0.89933 1.21150 1.00490 0.96748 0.94783 1.21164 0.94005 0.97919 0.95150 1.16181 0.95693 1.01913 0.90739 1.25908 0.92357 0.92338 0.92594 1.81303 1.09612 1.10813 1.12738 1.21343 0.99995 0.92936 0.93087 1.21316 0.93604 1.00355 0.96305 1.75269 1.20794 1.16929 1.03118 1.78449 1.08100 1.08435 1.13357 0.90892 0.94684 0.88316 0.90931 0.86977 0.95379 0.98817 0.92482 0.82641 0.79101 0.72887 0.85508 0.83598 0.81727 0.80907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.24 71.98 0.74 -1.89 16 2 C 0.09 2.03 5.93 86.38 0.51 2.55 16 3 N -0.59 -21.59 2.46 -826.14 -2.03 -23.62 16 4 C 0.26 13.46 5.16 85.63 0.44 13.90 16 5 C -0.54 -30.39 9.39 25.60 0.24 -30.15 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 9 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.48 17.37 7.68 87.66 0.67 18.04 16 14 O -0.58 -29.17 15.25 -3.02 -0.05 -29.21 16 15 C 0.10 1.96 5.48 85.63 0.47 2.43 16 16 N -0.28 -6.94 3.19 -350.56 -1.12 -8.06 16 17 C -0.01 -0.11 10.95 83.80 0.92 0.81 16 18 C -0.02 -0.40 6.98 41.02 0.29 -0.11 16 19 C 0.02 0.39 5.88 -19.99 -0.12 0.27 16 20 C -0.11 -1.95 9.69 22.43 0.22 -1.74 16 21 C -0.06 -0.83 9.74 22.50 0.22 -0.61 16 22 C -0.04 -0.50 5.74 -21.28 -0.12 -0.63 16 23 C 0.28 4.61 15.32 88.33 1.35 5.97 16 24 N -0.47 -10.26 18.54 19.01 0.35 -9.90 16 25 C -0.05 -0.41 9.74 22.50 0.22 -0.19 16 26 C -0.10 -0.80 9.56 22.43 0.21 -0.59 16 27 N -0.29 -9.82 12.15 -49.34 -0.60 -10.42 16 28 N -0.10 -3.76 12.09 37.02 0.45 -3.32 16 29 H 0.07 0.83 7.22 -2.39 -0.02 0.82 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 33 H 0.11 1.45 6.44 -2.39 -0.02 1.44 16 34 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 35 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 36 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 37 H 0.16 2.13 7.40 -2.38 -0.02 2.11 16 38 H 0.19 1.25 7.11 -2.39 -0.02 1.24 16 39 H 0.26 0.62 7.39 -2.91 -0.02 0.60 16 40 H 0.13 2.57 7.89 -2.91 -0.02 2.54 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 43 H 0.17 0.10 7.10 -2.91 -0.02 0.08 16 Total: -1.00 -93.57 383.40 7.10 -86.48 By element: Atomic # 1 Polarization: -3.67 SS G_CDS: 1.05 Total: -2.62 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 6.72 Total: 8.98 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -2.66 Total: -110.51 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.05 Total: -29.21 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -93.57 7.10 -86.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603209097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.756 kcal (2) G-P(sol) polarization free energy of solvation -93.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds