Wall clock time and date at job start Tue Mar 31 2020 23:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46705 * 239.99856 * 3 2 1 5 5 H 1.48497 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47218 * 119.99935 * 3 2 1 7 7 C 1.38810 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99995 * 163.08111 * 7 2 1 9 9 N 1.36929 * 120.00220 * 343.08395 * 7 2 1 10 10 C 1.46933 * 120.63083 * 331.84030 * 9 7 2 11 11 C 1.53193 * 108.77512 * 233.58756 * 10 9 7 12 12 C 1.53041 * 109.30997 * 305.36325 * 11 10 9 13 13 N 1.46510 * 109.45620 * 181.38673 * 12 11 10 14 14 C 1.34778 * 119.99521 * 154.97381 * 13 12 11 15 15 O 1.21576 * 120.00394 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99477 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99780 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46993 * 179.97438 * 17 16 14 19 19 C 1.38208 * 119.99738 * 259.72382 * 18 17 16 20 20 C 1.38435 * 119.99596 * 179.77059 * 19 18 17 21 21 F 1.35102 * 119.99984 * 180.27170 * 20 19 18 22 22 C 1.38468 * 120.00141 * 0.52524 * 20 19 18 23 23 C 1.38160 * 119.99956 * 359.72925 * 22 20 19 24 24 C 1.38432 * 120.00248 * 80.00056 * 18 17 16 25 25 F 1.35096 * 119.99552 * 359.97335 * 24 18 17 26 26 C 1.53035 * 109.52818 * 61.37519 * 12 11 10 27 27 C 1.46928 * 120.63508 * 151.81989 * 9 7 2 28 28 H 0.97004 * 119.99619 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58276 * 113.80325 * 10 9 7 30 30 H 1.08998 * 109.69852 * 353.44606 * 10 9 7 31 31 H 1.09005 * 109.49415 * 185.41834 * 11 10 9 32 32 H 1.08992 * 109.49834 * 65.31604 * 11 10 9 33 33 H 1.09002 * 109.46374 * 301.35714 * 12 11 10 34 34 H 0.96996 * 119.99709 * 334.97952 * 13 12 11 35 35 H 0.97005 * 120.00044 * 0.26997 * 16 14 13 36 36 H 1.08994 * 109.47090 * 299.99505 * 17 16 14 37 37 H 1.08993 * 109.47308 * 59.99991 * 17 16 14 38 38 H 1.07998 * 120.00283 * 0.02562 * 19 18 17 39 39 H 1.08003 * 120.00093 * 179.70406 * 22 20 19 40 40 H 1.07999 * 120.00152 * 179.97438 * 23 22 20 41 41 H 1.09001 * 109.49622 * 58.57414 * 26 12 11 42 42 H 1.09001 * 109.50042 * 178.67249 * 26 12 11 43 43 H 1.09004 * 109.59077 * 246.20680 * 27 9 7 44 44 H 1.09004 * 109.58372 * 6.48013 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3461 10 6 0.2260 -2.3399 1.2678 11 6 0.4973 -3.3191 2.4142 12 6 0.8118 -4.7007 1.8360 13 7 1.0393 -5.6476 2.9306 14 6 0.8354 -6.9654 2.7349 15 8 0.4622 -7.3684 1.6503 16 7 1.0442 -7.8364 3.7420 17 6 0.8231 -9.2689 3.5292 18 6 1.1258 -10.0183 4.8012 19 6 2.3365 -10.6685 4.9486 20 6 2.6165 -11.3529 6.1189 21 9 3.8021 -11.9839 6.2653 22 6 1.6793 -11.3952 7.1374 23 6 0.4670 -10.7496 6.9879 24 6 0.1891 -10.0602 5.8196 25 9 -0.9962 -9.4289 5.6733 26 6 2.0674 -4.6170 0.9651 27 6 1.8138 -3.6529 -0.1980 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6771 -2.6406 0.7365 30 1 0.0966 -1.3346 1.6686 31 1 -0.3835 -3.3841 3.0532 32 1 1.3469 -2.9676 2.9995 33 1 -0.0283 -5.0409 1.2304 34 1 1.3366 -5.3260 3.7961 35 1 1.3375 -7.5144 4.6088 36 1 -0.2158 -9.4380 3.2460 37 1 1.4788 -9.6236 2.7342 38 1 3.0657 -10.6392 4.1525 39 1 1.8959 -11.9332 8.0485 40 1 -0.2641 -10.7829 7.7821 41 1 2.9021 -4.2531 1.5642 42 1 2.3045 -5.6059 0.5725 43 1 1.0403 -4.0605 -0.8489 44 1 2.7332 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609338145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:37 Heat of formation + Delta-G solvation = -74.538724 kcal Electronic energy + Delta-G solvation = -28564.449459 eV Core-core repulsion = 24153.219916 eV Total energy + Delta-G solvation = -4411.229543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.43291 -49.39843 -40.14938 -39.35770 -37.48607 -35.17997 -34.31566 -32.44045 -31.69702 -30.59239 -30.04238 -29.27867 -26.69439 -24.81645 -23.58442 -22.50849 -22.18458 -21.80267 -20.63433 -19.43383 -18.51287 -18.06037 -17.75294 -17.57069 -16.75964 -16.50037 -16.08289 -15.78313 -15.32092 -14.96747 -14.87534 -14.79411 -14.48725 -14.29278 -14.01366 -13.68723 -13.53773 -13.43053 -13.16746 -12.99645 -12.80560 -12.49758 -12.37853 -12.30139 -11.56798 -11.43049 -11.09377 -10.83552 -10.70262 -10.48447 -10.25976 -10.15062 -10.01498 -9.81644 -9.71139 -9.51919 -9.25126 -9.10455 -8.59546 -8.42084 -6.66459 -5.77941 -3.20062 0.28346 0.39664 2.56351 2.99744 3.35200 3.39304 3.44915 3.46074 3.56172 3.60529 3.90104 4.06607 4.35476 4.36636 4.50840 4.53142 4.98852 5.03757 5.32157 5.34882 5.36855 5.39778 5.44532 5.49016 5.53599 5.62184 5.64421 5.92441 6.10962 6.16759 6.30056 6.31553 6.38161 6.51664 6.59907 6.63750 6.82697 6.90030 7.01126 7.10851 7.34172 7.63923 7.80483 8.12315 8.46378 8.73452 9.22443 9.85733 10.43068 11.30998 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.001941 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.412905 B =14421.500120 C =14705.296870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.738 5.738 14 C 0.704 3.296 15 O -0.589 6.589 16 N -0.749 5.749 17 C 0.182 3.818 18 C -0.112 4.112 19 C -0.105 4.105 20 C 0.088 3.912 21 F -0.133 7.133 22 C -0.118 4.118 23 C -0.127 4.127 24 C 0.108 3.892 25 F -0.126 7.126 26 C -0.139 4.139 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.391 0.609 35 H 0.395 0.605 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.021 0.979 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -23.457 17.119 29.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.391 5.391 14 C 0.404 3.596 15 O -0.466 6.466 16 N -0.406 5.406 17 C 0.058 3.942 18 C -0.113 4.113 19 C -0.124 4.124 20 C 0.068 3.932 21 F -0.112 7.112 22 C -0.137 4.137 23 C -0.146 4.146 24 C 0.088 3.912 25 F -0.104 7.104 26 C -0.179 4.179 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.224 0.776 35 H 0.228 0.772 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.033 -23.654 16.035 28.650 hybrid contribution 0.725 1.050 0.976 1.607 sum 2.758 -22.604 17.011 28.425 Atomic orbital electron populations 1.70019 1.05236 1.25619 1.53918 1.25058 0.95302 0.98423 1.00931 0.86360 0.78888 0.83347 0.78110 1.20886 1.21660 1.21084 1.19146 0.92546 0.84790 1.41673 0.91713 1.44090 1.35812 1.01671 1.49986 1.20742 0.88924 0.97869 0.87669 1.22546 1.00486 0.94740 1.00842 1.20928 0.98368 0.87489 0.86715 1.45546 1.72579 1.04810 1.16150 1.15956 0.78494 0.81283 0.83879 1.90928 1.53408 1.77953 1.24354 1.45092 1.75188 1.05914 1.14404 1.19869 1.02944 0.78924 0.92434 1.19841 0.93792 1.01197 0.96483 1.21031 0.96972 0.97032 0.97392 1.17647 0.82752 0.97212 0.95547 1.91545 1.43769 1.79882 1.95987 1.21074 0.92728 1.00604 0.99329 1.21041 0.98062 0.98219 0.97252 1.17603 0.82446 0.96145 0.94969 1.91573 1.43336 1.79632 1.95855 1.22388 0.97239 0.99486 0.98832 1.20879 0.97886 0.86507 0.92685 0.93558 0.96072 0.89049 0.92760 0.92246 0.90026 0.77605 0.77196 0.90007 0.89883 0.83242 0.83505 0.83362 0.92477 0.92706 0.96152 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.90 2.99 -172.31 -0.52 -15.42 16 10 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 11 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 12 C 0.17 2.98 2.42 -67.89 -0.16 2.82 16 13 N -0.74 -10.48 5.08 -58.63 -0.30 -10.78 16 14 C 0.70 10.48 8.53 -86.91 -0.74 9.74 16 15 O -0.59 -11.27 16.00 5.30 0.08 -11.19 16 16 N -0.75 -7.95 5.55 -66.42 -0.37 -8.32 16 17 C 0.18 1.73 5.52 -5.20 -0.03 1.70 16 18 C -0.11 -0.82 5.25 -104.56 -0.55 -1.37 16 19 C -0.10 -0.68 9.65 -39.52 -0.38 -1.07 16 20 C 0.09 0.57 7.30 -39.42 -0.29 0.29 16 21 F -0.13 -1.02 17.27 2.25 0.04 -0.98 16 22 C -0.12 -0.60 10.02 -39.53 -0.40 -1.00 16 23 C -0.13 -0.68 10.02 -39.52 -0.40 -1.08 16 24 C 0.11 0.80 7.24 -39.42 -0.29 0.51 16 25 F -0.13 -1.16 16.66 2.25 0.04 -1.12 16 26 C -0.14 -2.58 5.65 -26.62 -0.15 -2.73 16 27 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 34 H 0.39 4.43 8.62 -40.82 -0.35 4.08 16 35 H 0.39 3.25 8.48 -40.82 -0.35 2.90 16 36 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 37 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 38 H 0.15 0.82 8.03 -52.49 -0.42 0.40 16 39 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 40 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -32.58 372.95 -9.61 -42.19 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.00 Total: 3.78 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -3.80 Total: 5.17 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.56 Total: -60.04 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.08 Total: -2.10 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.58 -9.61 -42.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.350 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds