Wall clock time and date at job start Tue Mar 31 2020 23:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46705 * 239.99856 * 3 2 1 5 5 H 1.48497 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47218 * 119.99935 * 3 2 1 7 7 C 1.38810 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99995 * 163.08111 * 7 2 1 9 9 N 1.36929 * 120.00220 * 343.08395 * 7 2 1 10 10 C 1.46933 * 120.63083 * 331.84030 * 9 7 2 11 11 C 1.53193 * 108.77512 * 233.58756 * 10 9 7 12 12 C 1.53041 * 109.30997 * 305.36325 * 11 10 9 13 13 N 1.46510 * 109.45620 * 181.38673 * 12 11 10 14 14 C 1.34778 * 119.99521 * 154.97381 * 13 12 11 15 15 O 1.21576 * 120.00394 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99477 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99780 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46993 * 179.97438 * 17 16 14 19 19 C 1.38208 * 119.99738 * 259.72382 * 18 17 16 20 20 C 1.38435 * 119.99596 * 179.77059 * 19 18 17 21 21 F 1.35102 * 119.99984 * 180.27170 * 20 19 18 22 22 C 1.38468 * 120.00141 * 0.52524 * 20 19 18 23 23 C 1.38160 * 119.99956 * 359.72925 * 22 20 19 24 24 C 1.38432 * 120.00248 * 80.00056 * 18 17 16 25 25 F 1.35096 * 119.99552 * 359.97335 * 24 18 17 26 26 C 1.53035 * 109.52818 * 61.37519 * 12 11 10 27 27 C 1.46928 * 120.63508 * 151.81989 * 9 7 2 28 28 H 0.97004 * 119.99619 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58276 * 113.80325 * 10 9 7 30 30 H 1.08998 * 109.69852 * 353.44606 * 10 9 7 31 31 H 1.09005 * 109.49415 * 185.41834 * 11 10 9 32 32 H 1.08992 * 109.49834 * 65.31604 * 11 10 9 33 33 H 1.09002 * 109.46374 * 301.35714 * 12 11 10 34 34 H 0.96996 * 119.99709 * 334.97952 * 13 12 11 35 35 H 0.97005 * 120.00044 * 0.26997 * 16 14 13 36 36 H 1.08994 * 109.47090 * 299.99505 * 17 16 14 37 37 H 1.08993 * 109.47308 * 59.99991 * 17 16 14 38 38 H 1.07998 * 120.00283 * 0.02562 * 19 18 17 39 39 H 1.08003 * 120.00093 * 179.70406 * 22 20 19 40 40 H 1.07999 * 120.00152 * 179.97438 * 23 22 20 41 41 H 1.09001 * 109.49622 * 58.57414 * 26 12 11 42 42 H 1.09001 * 109.50042 * 178.67249 * 26 12 11 43 43 H 1.09004 * 109.59077 * 246.20680 * 27 9 7 44 44 H 1.09004 * 109.58372 * 6.48013 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3461 10 6 0.2260 -2.3399 1.2678 11 6 0.4973 -3.3191 2.4142 12 6 0.8118 -4.7007 1.8360 13 7 1.0393 -5.6476 2.9306 14 6 0.8354 -6.9654 2.7349 15 8 0.4622 -7.3684 1.6503 16 7 1.0442 -7.8364 3.7420 17 6 0.8231 -9.2689 3.5292 18 6 1.1258 -10.0183 4.8012 19 6 2.3365 -10.6685 4.9486 20 6 2.6165 -11.3529 6.1189 21 9 3.8021 -11.9839 6.2653 22 6 1.6793 -11.3952 7.1374 23 6 0.4670 -10.7496 6.9879 24 6 0.1891 -10.0602 5.8196 25 9 -0.9962 -9.4289 5.6733 26 6 2.0674 -4.6170 0.9651 27 6 1.8138 -3.6529 -0.1980 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6771 -2.6406 0.7365 30 1 0.0966 -1.3346 1.6686 31 1 -0.3835 -3.3841 3.0532 32 1 1.3469 -2.9676 2.9995 33 1 -0.0283 -5.0409 1.2304 34 1 1.3366 -5.3260 3.7961 35 1 1.3375 -7.5144 4.6088 36 1 -0.2158 -9.4380 3.2460 37 1 1.4788 -9.6236 2.7342 38 1 3.0657 -10.6392 4.1525 39 1 1.8959 -11.9332 8.0485 40 1 -0.2641 -10.7829 7.7821 41 1 2.9021 -4.2531 1.5642 42 1 2.3045 -5.6059 0.5725 43 1 1.0403 -4.0605 -0.8489 44 1 2.7332 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:36 Heat of formation + Delta-G solvation = -95.160277 kcal Electronic energy + Delta-G solvation = -28565.343677 eV Core-core repulsion = 24153.219916 eV Total energy + Delta-G solvation = -4412.123760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.01412 -49.95817 -41.27048 -40.02987 -39.05806 -36.27177 -35.79210 -33.97369 -32.72421 -31.72869 -31.22659 -30.82232 -27.64394 -26.54405 -24.10925 -23.97084 -23.67933 -22.76373 -21.87353 -21.05062 -19.60774 -18.82968 -18.56992 -18.29346 -18.12875 -17.48246 -16.93387 -16.76083 -16.40341 -16.38663 -15.86513 -15.64027 -15.41723 -15.38405 -15.31622 -15.10845 -14.79758 -14.64475 -14.31835 -14.04739 -14.02992 -13.74907 -13.39164 -13.19571 -12.99551 -12.95332 -12.56835 -12.53578 -12.23270 -12.06919 -12.02365 -11.85939 -11.56739 -11.42794 -11.25291 -10.54479 -10.37189 -10.28944 -9.77999 -9.63234 -8.70078 -7.86864 -5.32682 -0.22843 -0.06872 1.49547 1.51156 1.58560 1.67953 2.15594 2.32283 2.52926 3.03240 3.09970 3.26908 3.35574 3.36912 3.57929 3.67831 3.91358 3.94777 4.04298 4.08113 4.33816 4.35795 4.47255 4.51498 4.66560 4.68336 4.82352 4.86900 4.90049 4.95511 4.97306 5.03029 5.06874 5.08148 5.17155 5.30762 5.36398 5.47952 5.59933 5.65303 5.69683 5.70854 5.99344 6.39837 7.08826 7.15219 7.58292 7.84767 8.38037 9.20180 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.001941 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.412905 B =14421.500120 C =14705.296870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.703 3.297 15 O -0.633 6.633 16 N -0.730 5.730 17 C 0.183 3.817 18 C -0.115 4.115 19 C -0.104 4.104 20 C 0.078 3.922 21 F -0.141 7.141 22 C -0.106 4.106 23 C -0.119 4.119 24 C 0.095 3.905 25 F -0.140 7.140 26 C -0.123 4.123 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.006 1.006 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.409 0.591 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.172 0.828 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.006 0.994 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -24.568 19.640 31.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.076 3.924 13 N -0.380 5.380 14 C 0.403 3.597 15 O -0.514 6.514 16 N -0.387 5.387 17 C 0.059 3.941 18 C -0.116 4.116 19 C -0.123 4.123 20 C 0.059 3.941 21 F -0.119 7.119 22 C -0.125 4.125 23 C -0.138 4.138 24 C 0.075 3.925 25 F -0.118 7.118 26 C -0.163 4.163 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.245 0.755 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.190 0.810 40 H 0.189 0.811 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.024 0.976 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.469 -24.803 18.627 31.212 hybrid contribution 0.280 1.287 0.189 1.330 sum 3.749 -23.516 18.816 30.350 Atomic orbital electron populations 1.70183 1.06698 1.26022 1.55267 1.25839 0.96067 1.01590 1.01115 0.85304 0.77509 0.79013 0.78380 1.20311 1.22096 1.20099 1.19483 0.92871 0.85839 1.41200 0.91474 1.44351 1.35941 1.02214 1.50759 1.20567 0.87725 0.97742 0.88755 1.22254 1.01927 0.93606 0.98915 1.20501 0.97000 0.87665 0.87260 1.45128 1.72554 1.04253 1.16068 1.16072 0.78153 0.81565 0.83958 1.90906 1.55369 1.78692 1.26482 1.44922 1.73764 1.05965 1.14021 1.19857 1.02115 0.78250 0.93835 1.19562 0.94440 1.01916 0.95697 1.21070 0.96706 0.96718 0.97815 1.17806 0.82866 0.97440 0.95997 1.91531 1.44283 1.80066 1.96031 1.21362 0.91856 0.99615 0.99675 1.21275 0.98533 0.97043 0.96906 1.17843 0.81978 0.96835 0.95837 1.91539 1.44208 1.80086 1.96013 1.22175 0.97857 0.98547 0.97723 1.20970 0.97348 0.85950 0.93913 0.94010 0.98788 0.91796 0.90593 0.91067 0.92638 0.75439 0.75451 0.91488 0.89893 0.82551 0.80953 0.81088 0.91522 0.92279 0.97557 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.45 11.19 21.65 0.24 -55.21 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 3 Si 0.97 44.60 29.59 68.60 2.03 46.63 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.26 -14.56 9.58 84.03 0.81 -13.75 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.57 16 9 N -0.61 -31.04 2.99 -699.08 -2.09 -33.13 16 10 C 0.18 8.60 5.30 86.36 0.46 9.05 16 11 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 12 C 0.18 6.26 2.42 45.02 0.11 6.37 16 13 N -0.73 -19.32 5.08 -457.67 -2.33 -21.65 16 14 C 0.70 20.18 8.53 179.05 1.53 21.70 16 15 O -0.63 -24.26 16.00 -3.96 -0.06 -24.32 16 16 N -0.73 -14.45 5.55 -482.32 -2.68 -17.13 16 17 C 0.18 3.34 5.52 85.63 0.47 3.82 16 18 C -0.11 -1.53 5.25 -19.83 -0.10 -1.64 16 19 C -0.10 -1.18 9.65 22.31 0.22 -0.96 16 20 C 0.08 0.84 7.30 22.37 0.16 1.01 16 21 F -0.14 -1.87 17.27 44.97 0.78 -1.09 16 22 C -0.11 -0.75 10.02 22.31 0.22 -0.52 16 23 C -0.12 -0.94 10.02 22.31 0.22 -0.71 16 24 C 0.09 1.24 7.24 22.37 0.16 1.40 16 25 F -0.14 -2.43 16.66 44.97 0.75 -1.68 16 26 C -0.12 -4.45 5.65 30.67 0.17 -4.27 16 27 C 0.14 6.35 6.52 86.36 0.56 6.91 16 28 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 31 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.25 7.58 -2.39 -0.02 2.24 16 34 H 0.41 8.08 8.62 -92.71 -0.80 7.28 16 35 H 0.41 5.80 8.48 -92.70 -0.79 5.02 16 36 H 0.07 1.44 7.95 -2.39 -0.02 1.42 16 37 H 0.08 1.53 8.00 -2.39 -0.02 1.51 16 38 H 0.16 1.48 8.03 -2.91 -0.02 1.46 16 39 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 40 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.06 2.48 7.93 -2.38 -0.02 2.46 16 Total: -1.00 -71.82 372.95 1.68 -70.13 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.53 Total: 15.86 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 5.58 Total: 21.59 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -6.85 Total: -127.12 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.06 Total: -24.32 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 1.53 Total: -2.77 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -71.82 1.68 -70.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.026 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds