Wall clock time and date at job start Tue Mar 31 2020 22:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35492 * 126.98767 * 2 1 4 4 N 1.30512 * 107.31495 * 180.22538 * 3 2 1 5 5 N 1.28602 * 109.66926 * 359.77680 * 4 3 2 6 6 C 1.30521 * 109.67255 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.34438 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46992 * 90.02627 * 7 6 5 9 9 N 1.46501 * 109.46590 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99267 * 177.17764 * 9 8 7 11 11 O 1.21669 * 120.00406 * 5.31413 * 10 9 8 12 12 C 1.46896 * 119.99520 * 185.31734 * 10 9 8 13 13 C 1.36122 * 125.43224 * 186.41043 * 12 10 9 14 14 C 1.41705 * 107.74715 * 179.97438 * 13 12 10 15 15 C 1.40020 * 133.34983 * 179.97438 * 14 13 12 16 16 C 1.36577 * 119.83046 * 180.02562 * 15 14 13 17 17 C 1.38860 * 120.59945 * 359.97438 * 16 15 14 18 18 C 1.37847 * 120.63218 * 0.24223 * 17 16 15 19 19 C 1.39083 * 119.81761 * 359.55434 * 18 17 16 20 20 N 1.37838 * 133.16877 * 180.10097 * 19 18 17 21 21 C 1.36889 * 125.62008 * 0.29813 * 20 19 18 22 22 H 1.07995 * 119.99856 * 222.06367 * 21 20 19 23 23 C 1.39010 * 119.99887 * 42.06328 * 21 20 19 24 24 N 1.31346 * 120.00255 * 11.28103 * 23 21 20 25 25 Si 1.86801 * 119.99851 * 191.28550 * 23 21 20 26 26 H 1.48501 * 109.47143 * 59.99575 * 25 23 21 27 27 H 1.48501 * 109.47046 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47164 * 300.00087 * 25 23 21 29 29 H 1.09003 * 109.47131 * 270.15411 * 1 2 3 30 30 H 1.08999 * 109.47244 * 30.15608 * 1 2 3 31 31 H 1.09001 * 109.47574 * 150.15564 * 1 2 3 32 32 H 1.08010 * 126.33920 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46859 * 330.02839 * 7 6 5 34 34 H 1.08999 * 109.47062 * 210.02961 * 7 6 5 35 35 H 1.09002 * 109.46706 * 60.00102 * 8 7 6 36 36 H 1.08995 * 109.46781 * 300.00041 * 8 7 6 37 37 H 0.96999 * 120.00310 * 357.17932 * 9 8 7 38 38 H 1.07995 * 126.12914 * 359.95343 * 13 12 10 39 39 H 1.07997 * 120.08616 * 0.03361 * 15 14 13 40 40 H 1.07996 * 119.70023 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.68506 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.09072 * 179.70343 * 18 17 16 43 43 H 0.97002 * 120.00193 * 183.61667 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0049 5 7 3.5090 -0.6431 -0.0032 6 6 2.2800 -1.0824 0.0034 7 6 1.8475 -2.5261 0.0068 8 6 1.7079 -3.0132 1.4505 9 7 1.2869 -4.4164 1.4538 10 6 1.1539 -5.0772 2.6209 11 8 1.2888 -4.4841 3.6746 12 6 0.8461 -6.5135 2.6206 13 6 0.5673 -7.2611 3.7235 14 6 0.3278 -8.5904 3.2951 15 6 0.0020 -9.7736 3.9693 16 6 -0.1707 -10.9311 3.2653 17 6 -0.0266 -10.9468 1.8843 18 6 0.2981 -9.7957 1.1990 19 6 0.4748 -8.6037 1.8936 20 7 0.7927 -7.3214 1.5005 21 6 1.0178 -6.9150 0.2129 22 1 1.8310 -6.2387 -0.0055 23 6 0.1997 -7.3726 -0.8136 24 7 -0.9137 -8.0099 -0.5315 25 14 0.6837 -7.0814 -2.5941 26 1 1.9930 -7.7283 -2.8633 27 1 -0.3486 -7.6631 -3.4892 28 1 0.7919 -5.6218 -2.8453 29 1 -0.3633 0.0028 1.0277 30 1 -0.3634 0.8886 -0.5162 31 1 -0.3634 -0.8914 -0.5114 32 1 1.9702 2.1169 -0.0004 33 1 2.5935 -3.1300 -0.5098 34 1 0.8884 -2.6193 -0.5025 35 1 0.9619 -2.4092 1.9671 36 1 2.6670 -2.9199 1.9597 37 1 1.1040 -4.8699 0.6160 38 1 0.5349 -6.9049 4.7426 39 1 -0.1126 -9.7708 5.0432 40 1 -0.4216 -11.8426 3.7875 41 1 -0.1669 -11.8703 1.3424 42 1 0.4127 -9.8188 0.1253 43 1 -1.4580 -8.3752 -1.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609569788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:17 Heat of formation + Delta-G solvation = 105.198425 kcal Electronic energy + Delta-G solvation = -28588.945457 eV Core-core repulsion = 24636.199088 eV Total energy + Delta-G solvation = -3952.746369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.27094 -40.53630 -38.63497 -35.97302 -35.65819 -34.97818 -33.71766 -32.28080 -30.76711 -29.42029 -28.80193 -28.00759 -27.70195 -25.13673 -24.32678 -22.54173 -22.28218 -21.07881 -20.87096 -20.09518 -19.29643 -18.23116 -17.32246 -16.62755 -16.49740 -15.76958 -15.63735 -15.50735 -14.94730 -14.86442 -14.71542 -14.12663 -13.88399 -13.85597 -13.69221 -13.14108 -13.03093 -12.98297 -12.96709 -12.52650 -12.17930 -11.98956 -11.79921 -11.67327 -11.50801 -11.44991 -11.26054 -10.85293 -10.72659 -10.48869 -10.39878 -10.29514 -9.84518 -9.54579 -9.33777 -9.31368 -8.73709 -8.60566 -7.29153 -6.92809 -6.62520 -4.76607 1.60355 1.78732 2.25324 2.69319 2.73832 2.85742 2.88818 2.90369 3.08734 3.58416 3.61080 4.17598 4.23144 4.33707 4.38428 4.46699 4.61758 4.68136 4.72123 4.88106 5.01174 5.03363 5.27557 5.35932 5.58686 5.63189 5.81186 5.92269 5.93670 5.94012 6.01824 6.13306 6.39120 6.52151 6.62008 6.64414 6.74497 6.85411 6.88749 7.05624 7.08154 7.39650 7.52940 7.59401 7.86722 7.88346 8.11089 8.23381 8.59027 8.60365 8.87555 9.19445 10.03224 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003261 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.117673 B = 8583.123753 C = 9998.836967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.475 5.475 3 C 0.145 3.855 4 N -0.298 5.298 5 N -0.288 5.288 6 C 0.187 3.813 7 C -0.048 4.048 8 C 0.129 3.871 9 N -0.731 5.731 10 C 0.599 3.401 11 O -0.556 6.556 12 C -0.020 4.020 13 C -0.163 4.163 14 C -0.134 4.134 15 C -0.085 4.085 16 C -0.161 4.161 17 C -0.145 4.145 18 C -0.056 4.056 19 C 0.106 3.894 20 N -0.259 5.259 21 C -0.377 4.377 22 H 0.109 0.891 23 C 0.059 3.941 24 N -0.813 5.813 25 Si 0.922 3.078 26 H -0.262 1.262 27 H -0.275 1.275 28 H -0.264 1.264 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.218 0.782 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 8.967 -3.495 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.166 5.166 3 C -0.142 4.142 4 N -0.137 5.137 5 N -0.129 5.129 6 C -0.081 4.081 7 C -0.088 4.088 8 C 0.003 3.997 9 N -0.392 5.392 10 C 0.389 3.611 11 O -0.435 6.435 12 C -0.135 4.135 13 C -0.191 4.191 14 C -0.138 4.138 15 C -0.104 4.104 16 C -0.180 4.180 17 C -0.166 4.166 18 C -0.076 4.076 19 C -0.009 4.009 20 N 0.077 4.923 21 C -0.504 4.504 22 H 0.126 0.874 23 C -0.156 4.156 24 N -0.441 5.441 25 Si 0.746 3.254 26 H -0.187 1.187 27 H -0.200 1.200 28 H -0.189 1.189 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.234 0.766 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.263 0.737 38 H 0.150 0.850 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.019 9.547 -3.268 10.142 hybrid contribution -1.657 0.050 -1.360 2.144 sum -2.676 9.597 -4.628 10.985 Atomic orbital electron populations 1.22185 0.75130 1.05426 1.04681 1.46216 1.09348 1.06779 1.54267 1.26418 0.87286 0.94893 1.05639 1.74255 1.18107 1.03366 1.17978 1.74309 1.16941 1.03094 1.18521 1.24609 0.87297 0.91948 1.04215 1.20242 1.03661 0.86120 0.98807 1.21073 1.01017 0.83377 0.94226 1.46585 1.69997 1.11556 1.11018 1.17239 0.75481 0.85209 0.83175 1.90729 1.52535 1.68629 1.31597 1.20035 1.14618 0.90325 0.88524 1.20387 1.09876 0.91915 0.96901 1.18031 1.08955 0.93854 0.92990 1.20067 1.00803 0.91462 0.98055 1.20276 1.06351 0.97096 0.94258 1.20586 1.04865 0.96996 0.94138 1.20068 0.98964 0.89746 0.98806 1.18200 1.04809 0.85890 0.92025 1.39917 1.44487 1.03719 1.04188 1.19536 1.15718 1.33967 0.81209 0.87398 1.25658 0.93306 0.95349 1.01261 1.69952 1.09289 1.29472 1.35406 0.86053 0.79412 0.79742 0.80208 1.18691 1.19952 1.18865 0.89526 0.88861 0.88720 0.76557 0.87202 0.89073 0.92130 0.90789 0.73734 0.84994 0.87722 0.87892 0.87677 0.86849 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.04 59.84 0.66 1.04 16 2 N -0.48 -4.67 3.15 -122.69 -0.39 -5.05 16 3 C 0.15 1.47 12.74 -89.95 -1.15 0.32 16 4 N -0.30 -4.36 12.21 29.69 0.36 -4.00 16 5 N -0.29 -4.57 12.21 32.80 0.40 -4.17 16 6 C 0.19 2.41 7.28 -154.98 -1.13 1.28 16 7 C -0.05 -0.58 5.69 -27.88 -0.16 -0.74 16 8 C 0.13 1.90 5.66 -4.04 -0.02 1.88 16 9 N -0.73 -13.16 5.33 -61.55 -0.33 -13.49 16 10 C 0.60 13.03 7.76 -12.76 -0.10 12.93 16 11 O -0.56 -13.01 16.86 5.22 0.09 -12.92 16 12 C -0.02 -0.48 6.77 -82.25 -0.56 -1.03 16 13 C -0.16 -3.74 10.55 -39.02 -0.41 -4.15 16 14 C -0.13 -3.08 6.16 -106.89 -0.66 -3.74 16 15 C -0.08 -1.71 10.06 -39.51 -0.40 -2.11 16 16 C -0.16 -3.02 9.97 -39.95 -0.40 -3.42 16 17 C -0.15 -2.87 10.02 -39.49 -0.40 -3.26 16 18 C -0.06 -1.27 8.55 -39.41 -0.34 -1.60 16 19 C 0.11 2.56 6.04 -83.83 -0.51 2.05 16 20 N -0.26 -6.22 2.81 -56.08 -0.16 -6.38 16 21 C -0.38 -8.45 7.69 -15.01 -0.12 -8.57 16 22 H 0.11 2.23 6.43 -52.49 -0.34 1.90 16 23 C 0.06 1.28 4.66 -17.47 -0.08 1.20 16 24 N -0.81 -18.98 10.77 55.50 0.60 -18.39 16 25 Si 0.92 16.36 29.57 -169.99 -5.03 11.33 16 26 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 27 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 28 H -0.26 -4.39 7.11 56.52 0.40 -3.99 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.49 7.19 -51.93 -0.37 0.12 16 32 H 0.22 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.09 0.91 7.21 -51.93 -0.37 0.53 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.42 7.48 4.57 -40.82 -0.19 7.29 16 38 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 39 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.11 2.58 6.60 -52.48 -0.35 2.24 16 43 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -31.70 366.19 -9.67 -41.36 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -4.98 Total: 14.10 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -5.75 Total: -7.91 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.49 Total: -51.48 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.70 -9.67 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609569788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.562 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds