Wall clock time and date at job start Tue Mar 31 2020 22:36:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.35492 * 126.98767 * 2 1
4 4 N 1.30512 * 107.31495 * 180.22538 * 3 2 1
5 5 N 1.28602 * 109.66926 * 359.77680 * 4 3 2
6 6 C 1.30521 * 109.67255 * 359.97438 * 5 4 3
7 7 C 1.50704 * 126.34438 * 179.97438 * 6 5 4
8 8 C 1.53002 * 109.46992 * 90.02627 * 7 6 5
9 9 N 1.46501 * 109.46590 * 179.97438 * 8 7 6
10 10 C 1.34776 * 119.99267 * 177.17764 * 9 8 7
11 11 O 1.21669 * 120.00406 * 5.31413 * 10 9 8
12 12 C 1.46896 * 119.99520 * 185.31734 * 10 9 8
13 13 C 1.36122 * 125.43224 * 186.41043 * 12 10 9
14 14 C 1.41705 * 107.74715 * 179.97438 * 13 12 10
15 15 C 1.40020 * 133.34983 * 179.97438 * 14 13 12
16 16 C 1.36577 * 119.83046 * 180.02562 * 15 14 13
17 17 C 1.38860 * 120.59945 * 359.97438 * 16 15 14
18 18 C 1.37847 * 120.63218 * 0.24223 * 17 16 15
19 19 C 1.39083 * 119.81761 * 359.55434 * 18 17 16
20 20 N 1.37838 * 133.16877 * 180.10097 * 19 18 17
21 21 C 1.36889 * 125.62008 * 0.29813 * 20 19 18
22 22 H 1.07995 * 119.99856 * 222.06367 * 21 20 19
23 23 C 1.39010 * 119.99887 * 42.06328 * 21 20 19
24 24 N 1.31346 * 120.00255 * 11.28103 * 23 21 20
25 25 Si 1.86801 * 119.99851 * 191.28550 * 23 21 20
26 26 H 1.48501 * 109.47143 * 59.99575 * 25 23 21
27 27 H 1.48501 * 109.47046 * 179.97438 * 25 23 21
28 28 H 1.48500 * 109.47164 * 300.00087 * 25 23 21
29 29 H 1.09003 * 109.47131 * 270.15411 * 1 2 3
30 30 H 1.08999 * 109.47244 * 30.15608 * 1 2 3
31 31 H 1.09001 * 109.47574 * 150.15564 * 1 2 3
32 32 H 1.08010 * 126.33920 * 359.97438 * 3 2 1
33 33 H 1.09000 * 109.46859 * 330.02839 * 7 6 5
34 34 H 1.08999 * 109.47062 * 210.02961 * 7 6 5
35 35 H 1.09002 * 109.46706 * 60.00102 * 8 7 6
36 36 H 1.08995 * 109.46781 * 300.00041 * 8 7 6
37 37 H 0.96999 * 120.00310 * 357.17932 * 9 8 7
38 38 H 1.07995 * 126.12914 * 359.95343 * 13 12 10
39 39 H 1.07997 * 120.08616 * 0.03361 * 15 14 13
40 40 H 1.07996 * 119.70023 * 179.97438 * 16 15 14
41 41 H 1.07997 * 119.68506 * 180.02562 * 17 16 15
42 42 H 1.08003 * 120.09072 * 179.70343 * 18 17 16
43 43 H 0.97002 * 120.00193 * 183.61667 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2801 1.0823 0.0000
4 7 3.5091 0.6429 -0.0049
5 7 3.5090 -0.6431 -0.0032
6 6 2.2800 -1.0824 0.0034
7 6 1.8475 -2.5261 0.0068
8 6 1.7079 -3.0132 1.4505
9 7 1.2869 -4.4164 1.4538
10 6 1.1539 -5.0772 2.6209
11 8 1.2888 -4.4841 3.6746
12 6 0.8461 -6.5135 2.6206
13 6 0.5673 -7.2611 3.7235
14 6 0.3278 -8.5904 3.2951
15 6 0.0020 -9.7736 3.9693
16 6 -0.1707 -10.9311 3.2653
17 6 -0.0266 -10.9468 1.8843
18 6 0.2981 -9.7957 1.1990
19 6 0.4748 -8.6037 1.8936
20 7 0.7927 -7.3214 1.5005
21 6 1.0178 -6.9150 0.2129
22 1 1.8310 -6.2387 -0.0055
23 6 0.1997 -7.3726 -0.8136
24 7 -0.9137 -8.0099 -0.5315
25 14 0.6837 -7.0814 -2.5941
26 1 1.9930 -7.7283 -2.8633
27 1 -0.3486 -7.6631 -3.4892
28 1 0.7919 -5.6218 -2.8453
29 1 -0.3633 0.0028 1.0277
30 1 -0.3634 0.8886 -0.5162
31 1 -0.3634 -0.8914 -0.5114
32 1 1.9702 2.1169 -0.0004
33 1 2.5935 -3.1300 -0.5098
34 1 0.8884 -2.6193 -0.5025
35 1 0.9619 -2.4092 1.9671
36 1 2.6670 -2.9199 1.9597
37 1 1.1040 -4.8699 0.6160
38 1 0.5349 -6.9049 4.7426
39 1 -0.1126 -9.7708 5.0432
40 1 -0.4216 -11.8426 3.7875
41 1 -0.1669 -11.8703 1.3424
42 1 0.4127 -9.8188 0.1253
43 1 -1.4580 -8.3752 -1.2465
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000609569788.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:36:17
Heat of formation + Delta-G solvation = 105.198425 kcal
Electronic energy + Delta-G solvation = -28588.945457 eV
Core-core repulsion = 24636.199088 eV
Total energy + Delta-G solvation = -3952.746369 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.144 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-43.27094 -40.53630 -38.63497 -35.97302 -35.65819 -34.97818 -33.71766 -32.28080
-30.76711 -29.42029 -28.80193 -28.00759 -27.70195 -25.13673 -24.32678 -22.54173
-22.28218 -21.07881 -20.87096 -20.09518 -19.29643 -18.23116 -17.32246 -16.62755
-16.49740 -15.76958 -15.63735 -15.50735 -14.94730 -14.86442 -14.71542 -14.12663
-13.88399 -13.85597 -13.69221 -13.14108 -13.03093 -12.98297 -12.96709 -12.52650
-12.17930 -11.98956 -11.79921 -11.67327 -11.50801 -11.44991 -11.26054 -10.85293
-10.72659 -10.48869 -10.39878 -10.29514 -9.84518 -9.54579 -9.33777 -9.31368
-8.73709 -8.60566 -7.29153 -6.92809 -6.62520 -4.76607 1.60355 1.78732
2.25324 2.69319 2.73832 2.85742 2.88818 2.90369 3.08734 3.58416
3.61080 4.17598 4.23144 4.33707 4.38428 4.46699 4.61758 4.68136
4.72123 4.88106 5.01174 5.03363 5.27557 5.35932 5.58686 5.63189
5.81186 5.92269 5.93670 5.94012 6.01824 6.13306 6.39120 6.52151
6.62008 6.64414 6.74497 6.85411 6.88749 7.05624 7.08154 7.39650
7.52940 7.59401 7.86722 7.88346 8.11089 8.23381 8.59027 8.60365
8.87555 9.19445 10.03224
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.014180 B = 0.003261 C = 0.002800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1974.117673 B = 8583.123753 C = 9998.836967
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.475 5.475
3 C 0.145 3.855
4 N -0.298 5.298
5 N -0.288 5.288
6 C 0.187 3.813
7 C -0.048 4.048
8 C 0.129 3.871
9 N -0.731 5.731
10 C 0.599 3.401
11 O -0.556 6.556
12 C -0.020 4.020
13 C -0.163 4.163
14 C -0.134 4.134
15 C -0.085 4.085
16 C -0.161 4.161
17 C -0.145 4.145
18 C -0.056 4.056
19 C 0.106 3.894
20 N -0.259 5.259
21 C -0.377 4.377
22 H 0.109 0.891
23 C 0.059 3.941
24 N -0.813 5.813
25 Si 0.922 3.078
26 H -0.262 1.262
27 H -0.275 1.275
28 H -0.264 1.264
29 H 0.086 0.914
30 H 0.093 0.907
31 H 0.094 0.906
32 H 0.218 0.782
33 H 0.110 0.890
34 H 0.091 0.909
35 H 0.060 0.940
36 H 0.074 0.926
37 H 0.417 0.583
38 H 0.132 0.868
39 H 0.105 0.895
40 H 0.103 0.897
41 H 0.105 0.895
42 H 0.114 0.886
43 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.468 8.967 -3.495 9.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.166 5.166
3 C -0.142 4.142
4 N -0.137 5.137
5 N -0.129 5.129
6 C -0.081 4.081
7 C -0.088 4.088
8 C 0.003 3.997
9 N -0.392 5.392
10 C 0.389 3.611
11 O -0.435 6.435
12 C -0.135 4.135
13 C -0.191 4.191
14 C -0.138 4.138
15 C -0.104 4.104
16 C -0.180 4.180
17 C -0.166 4.166
18 C -0.076 4.076
19 C -0.009 4.009
20 N 0.077 4.923
21 C -0.504 4.504
22 H 0.126 0.874
23 C -0.156 4.156
24 N -0.441 5.441
25 Si 0.746 3.254
26 H -0.187 1.187
27 H -0.200 1.200
28 H -0.189 1.189
29 H 0.105 0.895
30 H 0.111 0.889
31 H 0.113 0.887
32 H 0.234 0.766
33 H 0.128 0.872
34 H 0.109 0.891
35 H 0.079 0.921
36 H 0.092 0.908
37 H 0.263 0.737
38 H 0.150 0.850
39 H 0.123 0.877
40 H 0.121 0.879
41 H 0.123 0.877
42 H 0.132 0.868
43 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -1.019 9.547 -3.268 10.142
hybrid contribution -1.657 0.050 -1.360 2.144
sum -2.676 9.597 -4.628 10.985
Atomic orbital electron populations
1.22185 0.75130 1.05426 1.04681 1.46216 1.09348 1.06779 1.54267
1.26418 0.87286 0.94893 1.05639 1.74255 1.18107 1.03366 1.17978
1.74309 1.16941 1.03094 1.18521 1.24609 0.87297 0.91948 1.04215
1.20242 1.03661 0.86120 0.98807 1.21073 1.01017 0.83377 0.94226
1.46585 1.69997 1.11556 1.11018 1.17239 0.75481 0.85209 0.83175
1.90729 1.52535 1.68629 1.31597 1.20035 1.14618 0.90325 0.88524
1.20387 1.09876 0.91915 0.96901 1.18031 1.08955 0.93854 0.92990
1.20067 1.00803 0.91462 0.98055 1.20276 1.06351 0.97096 0.94258
1.20586 1.04865 0.96996 0.94138 1.20068 0.98964 0.89746 0.98806
1.18200 1.04809 0.85890 0.92025 1.39917 1.44487 1.03719 1.04188
1.19536 1.15718 1.33967 0.81209 0.87398 1.25658 0.93306 0.95349
1.01261 1.69952 1.09289 1.29472 1.35406 0.86053 0.79412 0.79742
0.80208 1.18691 1.19952 1.18865 0.89526 0.88861 0.88720 0.76557
0.87202 0.89073 0.92130 0.90789 0.73734 0.84994 0.87722 0.87892
0.87677 0.86849 0.90465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.38 11.04 59.84 0.66 1.04 16
2 N -0.48 -4.67 3.15 -122.69 -0.39 -5.05 16
3 C 0.15 1.47 12.74 -89.95 -1.15 0.32 16
4 N -0.30 -4.36 12.21 29.69 0.36 -4.00 16
5 N -0.29 -4.57 12.21 32.80 0.40 -4.17 16
6 C 0.19 2.41 7.28 -154.98 -1.13 1.28 16
7 C -0.05 -0.58 5.69 -27.88 -0.16 -0.74 16
8 C 0.13 1.90 5.66 -4.04 -0.02 1.88 16
9 N -0.73 -13.16 5.33 -61.55 -0.33 -13.49 16
10 C 0.60 13.03 7.76 -12.76 -0.10 12.93 16
11 O -0.56 -13.01 16.86 5.22 0.09 -12.92 16
12 C -0.02 -0.48 6.77 -82.25 -0.56 -1.03 16
13 C -0.16 -3.74 10.55 -39.02 -0.41 -4.15 16
14 C -0.13 -3.08 6.16 -106.89 -0.66 -3.74 16
15 C -0.08 -1.71 10.06 -39.51 -0.40 -2.11 16
16 C -0.16 -3.02 9.97 -39.95 -0.40 -3.42 16
17 C -0.15 -2.87 10.02 -39.49 -0.40 -3.26 16
18 C -0.06 -1.27 8.55 -39.41 -0.34 -1.60 16
19 C 0.11 2.56 6.04 -83.83 -0.51 2.05 16
20 N -0.26 -6.22 2.81 -56.08 -0.16 -6.38 16
21 C -0.38 -8.45 7.69 -15.01 -0.12 -8.57 16
22 H 0.11 2.23 6.43 -52.49 -0.34 1.90 16
23 C 0.06 1.28 4.66 -17.47 -0.08 1.20 16
24 N -0.81 -18.98 10.77 55.50 0.60 -18.39 16
25 Si 0.92 16.36 29.57 -169.99 -5.03 11.33 16
26 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16
27 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16
28 H -0.26 -4.39 7.11 56.52 0.40 -3.99 16
29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16
30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16
31 H 0.09 0.49 7.19 -51.93 -0.37 0.12 16
32 H 0.22 1.13 8.06 -52.48 -0.42 0.70 16
33 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16
34 H 0.09 0.91 7.21 -51.93 -0.37 0.53 16
35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
37 H 0.42 7.48 4.57 -40.82 -0.19 7.29 16
38 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16
39 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16
40 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16
41 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16
42 H 0.11 2.58 6.60 -52.48 -0.35 2.24 16
43 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16
LS Contribution 366.19 15.07 5.52 5.52
Total: -1.00 -31.70 366.19 -9.67 -41.36
By element:
Atomic # 1 Polarization: 19.08 SS G_CDS: -4.98 Total: 14.10 kcal
Atomic # 6 Polarization: -2.16 SS G_CDS: -5.75 Total: -7.91 kcal
Atomic # 7 Polarization: -51.96 SS G_CDS: 0.49 Total: -51.48 kcal
Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal
Atomic # 14 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.33 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -31.70 -9.67 -41.36 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609569788.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.562 kcal
(2) G-P(sol) polarization free energy of solvation -31.699 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.864 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.198 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds